Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:116365648-117127632

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30 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Esyt2 12 116281196 to 116391050 109854 + protein coding gene extended synaptotagmin-like protein 2
Tssr115521 12 116373957 to 116373965 8 + TSS region transcription start site region 115521
2310058N22Rik 12 116379213 to 116380780 1567 unclassified gene RIKEN cDNA 2310058N22 gene
D430020J02Rik 12 116401947 to 116405161 3214 - bidirectional promoter lncRNA gene RIKEN cDNA D430020J02 gene
Cpgi5217 12 116405003 to 116405986 983 CpG island CpG island 5217
Tssr118135 12 116405103 to 116405154 51 - TSS region transcription start site region 118135
Tssr118136 12 116405157 to 116405185 28 - TSS region transcription start site region 118136
Tssr118137 12 116405189 to 116405217 28 - TSS region transcription start site region 118137
Tssr115522 12 116405341 to 116405363 22 + TSS region transcription start site region 115522
Ncapg2 12 116405355 to 116463532 58177 + protein coding gene non-SMC condensin II complex, subunit G2
Tssr115523 12 116405397 to 116405466 69 + TSS region transcription start site region 115523
Tssr115524 12 116442949 to 116442976 27 + TSS region transcription start site region 115524
Gm25112 12 116476896 to 116476999 103 - snRNA gene predicted gene, 25112
Gm27649 12 116478218 to 116478281 63 - snRNA gene predicted gene, 27649
Rnu7-ps1 12 116478218 to 116478281 63 - pseudogene U7 small nuclear RNA, pseudogene 1
Cpgi5218 12 116485298 to 116486737 1439 CpG island CpG island 5218
Tssr118138 12 116485601 to 116485614 13 - TSS region transcription start site region 118138
Tssr115525 12 116485714 to 116485784 70 + TSS region transcription start site region 115525
Ptprn2 12 116485720 to 117276849 791129 + protein coding gene protein tyrosine phosphatase, receptor type, N polypeptide 2
Tssr115526 12 116485799 to 116485818 19 + TSS region transcription start site region 115526
Gm6750 12 116507616 to 116507883 267 - pseudogene predicted gene 6750
Cpgi5219 12 116597186 to 116597344 158 CpG island CpG island 5219
Gm17807 12 116597253 to 116597550 297 + pseudogene predicted gene, 17807
Gm31336 12 116735648 to 116757632 21984 - lncRNA gene predicted gene, 31336
Tssr3983 12 116757191 to 116757205 14 - TSS region transcription start site region 3983
Tssr118139 12 116757209 to 116757222 13 - TSS region transcription start site region 118139
Gm48119 12 116850478 to 116853102 2624 - pseudogene predicted gene, 48119
5730406E14Rik 12 117031430 to 117032986 1556 unclassified gene RIKEN cDNA 5730406E14 gene
Gm19374 12 117100169 to 117103012 2843 unclassified gene predicted gene, 19374
Tssr115527 12 117127209 to 117127210 1 + TSS region transcription start site region 115527