Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:115840601-117130614

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plyid 12 109217459 to 115921502 6704043 QTL Polymeric IgA dominance
Igh 12 113258768 to 116009954 2751186 - complex/cluster/region immunoglobulin heavy chain complex
Ighv8-15 12 115844016 to 115844309 293 - pseudogenic gene segment immunoglobulin heavy variable V8-15
Ighv1-76 12 115847881 to 115848174 293 - gene segment immunoglobulin heavy variable 1-76
Tssr3980 12 115848333 to 115848371 38 - TSS region transcription start site region 3980
Ighv8-16 12 115858008 to 115858301 293 - pseudogenic gene segment immunoglobulin heavy variable V8-16
Ighv1-77 12 115861867 to 115862160 293 - gene segment immunoglobulin heavy variable 1-77
Tssr118123 12 115862314 to 115862353 39 - TSS region transcription start site region 118123
Ighv1-78 12 115868773 to 115869066 293 - gene segment immunoglobulin heavy variable 1-78
Tssr118124 12 115869226 to 115869254 28 - TSS region transcription start site region 118124
Gm42643 12 115881779 to 115882057 278 - pseudogenic gene segment predicted gene 42643
Gm5034 12 115883640 to 115884273 633 - pseudogene predicted gene 5034
Ighv1-79 12 115888096 to 115888389 293 - gene segment immunoglobulin heavy variable 1-79
Gm9256 12 115892884 to 115894303 1419 + pseudogene predicted gene 9256
Ighv1-80 12 115912344 to 115912637 293 - gene segment immunoglobulin heavy variable 1-80
Tssr118125 12 115912792 to 115912797 5 - TSS region transcription start site region 118125
Tssr118126 12 115912816 to 115912839 23 - TSS region transcription start site region 118126
Ighv1-81 12 115920279 to 115920572 293 - gene segment immunoglobulin heavy variable 1-81
D12Mit150a 12 115921332 to 115921502 170 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 150a
Gm42990 12 115933180 to 115933491 311 - pseudogenic gene segment predicted gene 42990
Olfr241-ps1 12 115934272 to 115934904 632 - pseudogene olfactory receptor 241, pseudogene 1
Ighv1-82 12 115952538 to 115952831 293 - gene segment immunoglobulin heavy variable 1-82
Tssr118127 12 115952984 to 115953000 16 - TSS region transcription start site region 118127
Tssr118128 12 115953010 to 115953033 23 - TSS region transcription start site region 118128
Ighv1-83 12 115963817 to 115964109 292 - gene segment immunoglobulin heavy variable 1-83
D12Mit150b 12 115964872 to 115965031 159 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 150b
Ighv1-84 12 115980702 to 115981134 432 - gene segment immunoglobulin heavy variable 1-84
Tssr118129 12 115981176 to 115981188 12 - TSS region transcription start site region 118129
Gm9260 12 115992180 to 115993563 1383 - pseudogene predicted gene 9260
Cpgi5212 12 115993498 to 115993696 198 CpG island CpG island 5212
Ighv1-85 12 116000028 to 116000321 293 - gene segment immunoglobulin heavy variable 1-85
Tssr118130 12 116000506 to 116000516 10 - TSS region transcription start site region 118130
Ighv1-86 12 116009659 to 116009954 295 - gene segment immunoglobulin heavy variable 1-86
Tssr118131 12 116010137 to 116010141 4 - TSS region transcription start site region 118131
Cpgi5213 12 116047546 to 116048262 716 CpG island CpG island 5213
Zfp386 12 116047707 to 116063231 15524 + protein coding gene zinc finger protein 386 (Kruppel-like)
Tssr115510 12 116047713 to 116047807 94 + TSS region transcription start site region 115510
Tssr3981 12 116047813 to 116047825 12 + TSS region transcription start site region 3981
Tssr3982 12 116047827 to 116047836 9 + TSS region transcription start site region 3982
Tssr115511 12 116048007 to 116048070 63 + TSS region transcription start site region 115511
Tssr115512 12 116055345 to 116055351 6 + TSS region transcription start site region 115512
Gm46383 12 116075152 to 116078237 3085 - lncRNA gene predicted gene, 46383
Cpgi5214 12 116077543 to 116078255 712 CpG island CpG island 5214
Tssr115513 12 116077720 to 116077839 119 + TSS region transcription start site region 115513
Vipr2 12 116077726 to 116146261 68535 + protein coding gene vasoactive intestinal peptide receptor 2
Gm20658 12 116100553 to 116112310 11757 - antisense lncRNA gene predicted gene 20658
Tssr115514 12 116140942 to 116140955 13 + TSS region transcription start site region 115514
Tssr115515 12 116140968 to 116140979 11 + TSS region transcription start site region 115515
Tssr115516 12 116140983 to 116140993 10 + TSS region transcription start site region 115516
Gm48618 12 116151603 to 116152341 738 - pseudogene predicted gene, 48618
Gm44372 12 116152101 to 116152221 120 - miRNA gene predicted gene, 44372
Gm48620 12 116162988 to 116163809 821 - pseudogene predicted gene, 48620
Gm23732 12 116173313 to 116173419 106 + snRNA gene predicted gene, 23732
Gm46330 12 116196083 to 116197444 1361 + lncRNA gene predicted gene, 46330
Tssr118132 12 116200205 to 116200227 22 - TSS region transcription start site region 118132
Wdr60 12 116206262 to 116263022 56760 - protein coding gene WD repeat domain 60
Gm23190 12 116242504 to 116242567 63 - miRNA gene predicted gene, 23190
Tssr118133 12 116256032 to 116256046 14 - TSS region transcription start site region 118133
Cpgi5215 12 116262661 to 116263197 536 CpG island CpG island 5215
Tssr118134 12 116262946 to 116263046 100 - TSS region transcription start site region 118134
Gm11027 12 116275386 to 116275612 226 + protein coding gene predicted gene 11027
Gm48079 12 116279682 to 116280231 549 - lincRNA gene predicted gene, 48079
Gm4132 12 116280380 to 116281125 745 unclassified gene predicted gene 4132
Cpgi5216 12 116280542 to 116282212 1670 CpG island CpG island 5216
Tssr115517 12 116281180 to 116281229 49 + TSS region transcription start site region 115517
Esyt2 12 116281196 to 116391050 109854 + protein coding gene extended synaptotagmin-like protein 2
Tssr115518 12 116281244 to 116281261 17 + TSS region transcription start site region 115518
Tssr115519 12 116281268 to 116281280 12 + TSS region transcription start site region 115519
Tssr115520 12 116281291 to 116281294 3 + TSS region transcription start site region 115520
Tssr115521 12 116373957 to 116373965 8 + TSS region transcription start site region 115521
2310058N22Rik 12 116379213 to 116380780 1567 unclassified gene RIKEN cDNA 2310058N22 gene
D430020J02Rik 12 116401947 to 116405161 3214 - bidirectional promoter lncRNA gene RIKEN cDNA D430020J02 gene
Cpgi5217 12 116405003 to 116405986 983 CpG island CpG island 5217
Tssr118135 12 116405103 to 116405154 51 - TSS region transcription start site region 118135
Tssr118136 12 116405157 to 116405185 28 - TSS region transcription start site region 118136
Tssr118137 12 116405189 to 116405217 28 - TSS region transcription start site region 118137
Tssr115522 12 116405341 to 116405363 22 + TSS region transcription start site region 115522
Ncapg2 12 116405355 to 116463532 58177 + protein coding gene non-SMC condensin II complex, subunit G2
Tssr115523 12 116405397 to 116405466 69 + TSS region transcription start site region 115523
Tssr115524 12 116442949 to 116442976 27 + TSS region transcription start site region 115524
Gm25112 12 116476896 to 116476999 103 - snRNA gene predicted gene, 25112
Gm27649 12 116478218 to 116478281 63 - snRNA gene predicted gene, 27649
Rnu7-ps1 12 116478218 to 116478281 63 - pseudogene U7 small nuclear RNA, pseudogene 1
Cpgi5218 12 116485298 to 116486737 1439 CpG island CpG island 5218
Tssr118138 12 116485601 to 116485614 13 - TSS region transcription start site region 118138
Tssr115525 12 116485714 to 116485784 70 + TSS region transcription start site region 115525
Ptprn2 12 116485720 to 117276849 791129 + protein coding gene protein tyrosine phosphatase, receptor type, N polypeptide 2
Tssr115526 12 116485799 to 116485818 19 + TSS region transcription start site region 115526
Gm6750 12 116507616 to 116507883 267 - pseudogene predicted gene 6750
Cpgi5219 12 116597186 to 116597344 158 CpG island CpG island 5219
Gm17807 12 116597253 to 116597550 297 + pseudogene predicted gene, 17807
Gm31336 12 116735648 to 116757632 21984 - lncRNA gene predicted gene, 31336
Tssr3983 12 116757191 to 116757205 14 - TSS region transcription start site region 3983
Tssr118139 12 116757209 to 116757222 13 - TSS region transcription start site region 118139
Gm48119 12 116850478 to 116853102 2624 - pseudogene predicted gene, 48119
5730406E14Rik 12 117031430 to 117032986 1556 unclassified gene RIKEN cDNA 5730406E14 gene
Gm19374 12 117100169 to 117103012 2843 unclassified gene predicted gene, 19374
Tssr115527 12 117127209 to 117127210 1 + TSS region transcription start site region 115527