Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:115321889-116062182

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plyid 12 109217459 to 115921502 6704043 QTL Polymeric IgA dominance
Igh 12 113258768 to 116009954 2751186 - complex/cluster/region immunoglobulin heavy chain complex
Ighv1-59 12 115335082 to 115335514 432 - gene segment immunoglobulin heavy variable V1-59
Ighv1-60 12 115344537 to 115344830 293 - pseudogenic gene segment immunoglobulin heavy variable V1-60
Ighv1-61 12 115359140 to 115359433 293 - gene segment immunoglobulin heavy variable 1-61
Ighv1-62 12 115371986 to 115372278 292 - pseudogenic gene segment immunoglobulin heavy variable V1-62
Tssr118118 12 115372460 to 115372488 28 - TSS region transcription start site region 118118
Ighv1-62-1 12 115386707 to 115386988 281 - gene segment immunoglobulin heavy variable 1-62-1
Gm19331 12 115386846 to 115397688 10842 + lincRNA gene predicted gene, 19331
Gm37511 12 115404431 to 115404724 293 - pseudogenic gene segment predicted gene, 37511
Gm30996 12 115407614 to 115428251 20637 + lncRNA gene predicted gene, 30996
Gm38184 12 115412927 to 115413123 196 - pseudogenic gene segment predicted gene, 38184
Ighv1-62-2 12 115446417 to 115446710 293 - gene segment immunoglobulin heavy variable 1-62-2
Tssr118119 12 115446877 to 115446905 28 - TSS region transcription start site region 118119
Ighv1-62-3 12 115460999 to 115461431 432 - gene segment immunoglobulin heavy variable 1-62-3
Ighv8-9 12 115468331 to 115468632 301 - gene segment immunoglobulin heavy variable V8-9
Gm9236 12 115476518 to 115476902 384 + pseudogene predicted gene 9236
Ighv1-63 12 115495625 to 115496058 433 - gene segment immunoglobulin heavy variable V1-63
Gm27722 12 115499019 to 115499094 75 - miRNA gene predicted gene, 27722
Ighv1-64 12 115507587 to 115507977 390 - gene segment immunoglobulin heavy variable 1-64
Tssr118120 12 115508014 to 115508034 20 - TSS region transcription start site region 118120
Ighv8-10 12 115519340 to 115519640 300 - pseudogenic gene segment immunoglobulin heavy variable V8-10
Gm18340 12 115526351 to 115526959 608 + pseudogene predicted gene, 18340
Ighv1-65 12 115532055 to 115532347 292 - pseudogenic gene segment immunoglobulin heavy variable V1-65
Gm9238 12 115546069 to 115546397 328 - pseudogene predicted gene 9238
Ighv8-11 12 115567149 to 115567449 300 - gene segment immunoglobulin heavy variable V8-11
Rpl7a-ps2 12 115590407 to 115591134 727 + pseudogene ribosomal protein L7A, pseudogene 2
Ighv1-66 12 115593110 to 115593403 293 - gene segment immunoglobulin heavy variable 1-66
Ighv1-67 12 115603940 to 115604233 293 - gene segment immunoglobulin heavy variable V1-67
Tssr118121 12 115604411 to 115604432 21 - TSS region transcription start site region 118121
Ighv1-68 12 115611340 to 115611633 293 - pseudogenic gene segment immunoglobulin heavy variable V1-68
Gm5660 12 115616135 to 115616803 668 + pseudogene predicted gene 5660
Gm9245 12 115617272 to 115617950 678 + pseudogene predicted gene 9245
Ighv1-69 12 115623203 to 115623595 392 - gene segment immunoglobulin heavy variable 1-69
Tssr3979 12 115623640 to 115623653 13 - TSS region transcription start site region 3979
Ighv8-12 12 115647945 to 115648245 300 - gene segment immunoglobulin heavy variable V8-12
Gm6105 12 115659264 to 115659788 524 + pseudogene predicted gene 6105
Gm44782 12 115688840 to 115688889 49 + pseudogene predicted gene 44782
Ighv1-70 12 115691889 to 115692182 293 - gene segment immunoglobulin heavy variable 1-70
Mir6388 12 115695720 to 115695794 74 - miRNA gene microRNA 6388
Gm40900 12 115703830 to 115715167 11337 + lncRNA gene predicted gene, 40900
Ighv1-71 12 115742205 to 115742506 301 - gene segment immunoglobulin heavy variable 1-71
Tssr118122 12 115742674 to 115742703 29 - TSS region transcription start site region 118122
Ighv1-72 12 115757984 to 115758277 293 - gene segment immunoglobulin heavy variable 1-72
Ighv8-13 12 115765335 to 115765635 300 - gene segment immunoglobulin heavy variable 8-13
Gm9251 12 115773343 to 115774991 1648 + pseudogene predicted gene 9251
Ighv1-73 12 115790593 to 115790887 294 - gene segment immunoglobulin heavy variable 1-73
Ighv1-74 12 115802690 to 115803080 390 - gene segment immunoglobulin heavy variable V1-74
Ighv8-14 12 115808427 to 115808727 300 - gene segment immunoglobulin heavy variable 8-14
Gm18341 12 115814954 to 115815575 621 + pseudogene predicted gene, 18341
Gm19843 12 115831276 to 115832047 771 + pseudogene predicted gene, 19843
Ighv1-75 12 115833950 to 115834243 293 - gene segment immunoglobulin heavy variable 1-75
Ighv8-15 12 115844016 to 115844309 293 - pseudogenic gene segment immunoglobulin heavy variable V8-15
Ighv1-76 12 115847881 to 115848174 293 - gene segment immunoglobulin heavy variable 1-76
Tssr3980 12 115848333 to 115848371 38 - TSS region transcription start site region 3980
Ighv8-16 12 115858008 to 115858301 293 - pseudogenic gene segment immunoglobulin heavy variable V8-16
Ighv1-77 12 115861867 to 115862160 293 - gene segment immunoglobulin heavy variable 1-77
Tssr118123 12 115862314 to 115862353 39 - TSS region transcription start site region 118123
Ighv1-78 12 115868773 to 115869066 293 - gene segment immunoglobulin heavy variable 1-78
Tssr118124 12 115869226 to 115869254 28 - TSS region transcription start site region 118124
Gm42643 12 115881779 to 115882057 278 - pseudogenic gene segment predicted gene 42643
Gm5034 12 115883640 to 115884273 633 - pseudogene predicted gene 5034
Ighv1-79 12 115888096 to 115888389 293 - gene segment immunoglobulin heavy variable 1-79
Gm9256 12 115892884 to 115894303 1419 + pseudogene predicted gene 9256
Ighv1-80 12 115912344 to 115912637 293 - gene segment immunoglobulin heavy variable 1-80
Tssr118125 12 115912792 to 115912797 5 - TSS region transcription start site region 118125
Tssr118126 12 115912816 to 115912839 23 - TSS region transcription start site region 118126
Ighv1-81 12 115920279 to 115920572 293 - gene segment immunoglobulin heavy variable 1-81
D12Mit150a 12 115921332 to 115921502 170 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 150a
Gm42990 12 115933180 to 115933491 311 - pseudogenic gene segment predicted gene 42990
Olfr241-ps1 12 115934272 to 115934904 632 - pseudogene olfactory receptor 241, pseudogene 1
Ighv1-82 12 115952538 to 115952831 293 - gene segment immunoglobulin heavy variable 1-82
Tssr118127 12 115952984 to 115953000 16 - TSS region transcription start site region 118127
Tssr118128 12 115953010 to 115953033 23 - TSS region transcription start site region 118128
Ighv1-83 12 115963817 to 115964109 292 - gene segment immunoglobulin heavy variable 1-83
D12Mit150b 12 115964872 to 115965031 159 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 150b
Ighv1-84 12 115980702 to 115981134 432 - gene segment immunoglobulin heavy variable 1-84
Tssr118129 12 115981176 to 115981188 12 - TSS region transcription start site region 118129
Gm9260 12 115992180 to 115993563 1383 - pseudogene predicted gene 9260
Cpgi5212 12 115993498 to 115993696 198 CpG island CpG island 5212
Ighv1-85 12 116000028 to 116000321 293 - gene segment immunoglobulin heavy variable 1-85
Tssr118130 12 116000506 to 116000516 10 - TSS region transcription start site region 118130
Ighv1-86 12 116009659 to 116009954 295 - gene segment immunoglobulin heavy variable 1-86
Tssr118131 12 116010137 to 116010141 4 - TSS region transcription start site region 118131
Cpgi5213 12 116047546 to 116048262 716 CpG island CpG island 5213
Zfp386 12 116047707 to 116063231 15524 + protein coding gene zinc finger protein 386 (Kruppel-like)
Tssr115510 12 116047713 to 116047807 94 + TSS region transcription start site region 115510
Tssr3981 12 116047813 to 116047825 12 + TSS region transcription start site region 3981
Tssr3982 12 116047827 to 116047836 9 + TSS region transcription start site region 3982
Tssr115511 12 116048007 to 116048070 63 + TSS region transcription start site region 115511
Tssr115512 12 116055345 to 116055351 6 + TSS region transcription start site region 115512