Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:115089431-115719724

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ighv1-50 12 115119748 to 115120041 293 - gene segment immunoglobulin heavy variable 1-50
Ighv1-51 12 115131375 to 115131668 293 - pseudogenic gene segment immunoglobulin heavy variable V1-51
Ighv1-52 12 115145487 to 115145780 293 - gene segment immunoglobulin heavy variable 1-52
Ighv1-53 12 115158445 to 115158835 390 - gene segment immunoglobulin heavy variable 1-53
Ighv8-6 12 115165777 to 115166077 300 - gene segment immunoglobulin heavy variable V8-6
Gm9227 12 115175975 to 115176356 381 + pseudogene predicted gene 9227
Ighv1-54 12 115193675 to 115193968 293 - gene segment immunoglobulin heavy variable V1-54
Tssr118114 12 115194119 to 115194126 7 - TSS region transcription start site region 118114
Tssr118115 12 115194143 to 115194169 26 - TSS region transcription start site region 118115
Ighv1-55 12 115208137 to 115208527 390 - gene segment immunoglobulin heavy variable 1-55
Tssr3978 12 115224782 to 115224788 6 + TSS region transcription start site region 3978
Gm7142 12 115224859 to 115225387 528 + pseudogene predicted gene 7142
Ighv1-56 12 115242802 to 115243095 293 - gene segment immunoglobulin heavy variable 1-56
Gm7019 12 115244185 to 115244553 368 - pseudogene predicted pseudogene 7019
Tssr115509 12 115258086 to 115258126 40 + TSS region transcription start site region 115509
Ighv8-7 12 115258139 to 115258432 293 - pseudogenic gene segment immunoglobulin heavy variable V8-7
Gm30948 12 115262684 to 115287908 25224 + lincRNA gene predicted gene, 30948
Ighv1-57 12 115268424 to 115268715 291 - pseudogenic gene segment immunoglobulin heavy variable V1-57
Ighv8-8 12 115294066 to 115294362 296 - gene segment immunoglobulin heavy variable 8-8
Tssr118116 12 115294483 to 115294518 35 - TSS region transcription start site region 118116
Ighv1-58 12 115312166 to 115312597 431 - gene segment immunoglobulin heavy variable 1-58
Tssr118117 12 115312648 to 115312655 7 - TSS region transcription start site region 118117
Ighv1-59 12 115335082 to 115335514 432 - gene segment immunoglobulin heavy variable V1-59
Ighv1-60 12 115344537 to 115344830 293 - pseudogenic gene segment immunoglobulin heavy variable V1-60
Ighv1-61 12 115359140 to 115359433 293 - gene segment immunoglobulin heavy variable 1-61
Ighv1-62 12 115371986 to 115372278 292 - pseudogenic gene segment immunoglobulin heavy variable V1-62
Tssr118118 12 115372460 to 115372488 28 - TSS region transcription start site region 118118
Ighv1-62-1 12 115386707 to 115386988 281 - gene segment immunoglobulin heavy variable 1-62-1
Gm19331 12 115386846 to 115397688 10842 + lincRNA gene predicted gene, 19331
Gm37511 12 115404431 to 115404724 293 - pseudogenic gene segment predicted gene, 37511
Gm30996 12 115407614 to 115428251 20637 + lncRNA gene predicted gene, 30996
Gm38184 12 115412927 to 115413123 196 - pseudogenic gene segment predicted gene, 38184
Ighv1-62-2 12 115446417 to 115446710 293 - gene segment immunoglobulin heavy variable 1-62-2
Tssr118119 12 115446877 to 115446905 28 - TSS region transcription start site region 118119
Ighv1-62-3 12 115460999 to 115461431 432 - gene segment immunoglobulin heavy variable 1-62-3
Ighv8-9 12 115468331 to 115468632 301 - gene segment immunoglobulin heavy variable V8-9
Gm9236 12 115476518 to 115476902 384 + pseudogene predicted gene 9236
Ighv1-63 12 115495625 to 115496058 433 - gene segment immunoglobulin heavy variable V1-63
Gm27722 12 115499019 to 115499094 75 - miRNA gene predicted gene, 27722
Ighv1-64 12 115507587 to 115507977 390 - gene segment immunoglobulin heavy variable 1-64
Tssr118120 12 115508014 to 115508034 20 - TSS region transcription start site region 118120
Ighv8-10 12 115519340 to 115519640 300 - pseudogenic gene segment immunoglobulin heavy variable V8-10
Gm18340 12 115526351 to 115526959 608 + pseudogene predicted gene, 18340
Ighv1-65 12 115532055 to 115532347 292 - pseudogenic gene segment immunoglobulin heavy variable V1-65
Gm9238 12 115546069 to 115546397 328 - pseudogene predicted gene 9238
Ighv8-11 12 115567149 to 115567449 300 - gene segment immunoglobulin heavy variable V8-11
Rpl7a-ps2 12 115590407 to 115591134 727 + pseudogene ribosomal protein L7A, pseudogene 2
Ighv1-66 12 115593110 to 115593403 293 - gene segment immunoglobulin heavy variable 1-66
Ighv1-67 12 115603940 to 115604233 293 - gene segment immunoglobulin heavy variable V1-67
Tssr118121 12 115604411 to 115604432 21 - TSS region transcription start site region 118121
Ighv1-68 12 115611340 to 115611633 293 - pseudogenic gene segment immunoglobulin heavy variable V1-68
Gm5660 12 115616135 to 115616803 668 + pseudogene predicted gene 5660
Gm9245 12 115617272 to 115617950 678 + pseudogene predicted gene 9245
Ighv1-69 12 115623203 to 115623595 392 - gene segment immunoglobulin heavy variable 1-69
Tssr3979 12 115623640 to 115623653 13 - TSS region transcription start site region 3979
Ighv8-12 12 115647945 to 115648245 300 - gene segment immunoglobulin heavy variable V8-12
Gm6105 12 115659264 to 115659788 524 + pseudogene predicted gene 6105
Gm44782 12 115688840 to 115688889 49 + pseudogene predicted gene 44782
Ighv1-70 12 115691889 to 115692182 293 - gene segment immunoglobulin heavy variable 1-70
Mir6388 12 115695720 to 115695794 74 - miRNA gene microRNA 6388
Gm40900 12 115703830 to 115715167 11337 + lncRNA gene predicted gene, 40900