Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:114676889-116707182

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229 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plyid 12 109217459 to 115921502 6704043 QTL Polymeric IgA dominance
Igh 12 113258768 to 116009954 2751186 - complex/cluster/region immunoglobulin heavy chain complex
Ighv1-17 12 114676749 to 114677042 293 - pseudogenic gene segment immunoglobulin heavy variable 1-17
Ighv1-18 12 114682632 to 114682925 293 - gene segment immunoglobulin heavy variable V1-18
Tssr118093 12 114683112 to 114683118 6 - TSS region transcription start site region 118093
Ighv1-19-1 12 114704147 to 114704440 293 - gene segment immunoglobulin heavy variable 1-19-1
Ighv1-19 12 114708648 to 114708941 293 - gene segment immunoglobulin heavy variable V1-19
Tssr118094 12 114709130 to 114709135 5 - TSS region transcription start site region 118094
Ighv1-20 12 114723772 to 114724065 293 - gene segment immunoglobulin heavy variable V1-20
Ighv1-21-1 12 114736245 to 114736538 293 - pseudogenic gene segment immunoglobulin heavy variable 1-21-1
Tssr118095 12 114736727 to 114736734 7 - TSS region transcription start site region 118095
Ighv1-21 12 114740408 to 114740841 433 - pseudogenic gene segment immunoglobulin heavy variable V1-21
Tssr118096 12 114740889 to 114740892 3 - TSS region transcription start site region 118096
Ighv1-22 12 114746273 to 114746566 293 - gene segment immunoglobulin heavy variable 1-22
Tssr118097 12 114746754 to 114746761 7 - TSS region transcription start site region 118097
Ighv1-23 12 114764450 to 114764743 293 - gene segment immunoglobulin heavy variable V1-23
Gm40899 12 114764738 to 114779554 14816 + lncRNA gene predicted gene, 40899
Tssr118098 12 114764895 to 114764911 16 - TSS region transcription start site region 118098
Ighv1-24 12 114772928 to 114773221 293 - gene segment immunoglobulin heavy variable V1-24
Ighv1-25 12 114781409 to 114781702 293 - pseudogenic gene segment immunoglobulin heavy variable 1-25
Ighv1-26 12 114788372 to 114788665 293 - gene segment immunoglobulin heavy variable 1-26
Tssr118099 12 114788853 to 114788861 8 - TSS region transcription start site region 118099
Ighv1-27 12 114804616 to 114804909 293 - pseudogenic gene segment immunoglobulin heavy variable V1-27
Gm34465 12 114808833 to 114811764 2931 + pseudogene predicted gene, 34465
Ighv1-28 12 114809421 to 114809714 293 - pseudogenic gene segment immunoglobulin heavy variable 1-28
Tssr118100 12 114809903 to 114809909 6 - TSS region transcription start site region 118100
Ighv1-29 12 114812321 to 114812605 284 - pseudogenic gene segment immunoglobulin heavy variable V1-29
Tssr118101 12 114812798 to 114812805 7 - TSS region transcription start site region 118101
Ighv1-30 12 114817099 to 114817390 291 - pseudogenic gene segment immunoglobulin heavy variable 1-30
Ighv1-31 12 114829264 to 114829557 293 - gene segment immunoglobulin heavy variable 1-31
Tssr118102 12 114829743 to 114829749 6 - TSS region transcription start site region 118102
Ighv1-32 12 114835223 to 114835516 293 - pseudogenic gene segment immunoglobulin heavy variable V1-32
Tssr118103 12 114835695 to 114835710 15 - TSS region transcription start site region 118103
Ighv1-33 12 114843693 to 114844083 390 - pseudogenic gene segment immunoglobulin heavy variable 1-33
Tssr3976 12 114844133 to 114844139 6 - TSS region transcription start site region 3976
Ighv1-34 12 114851190 to 114851483 293 - gene segment immunoglobulin heavy variable 1-34
Tssr118104 12 114851671 to 114851678 7 - TSS region transcription start site region 118104
D12Mit134 12 114867852 to 114868033 181 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 134
Nociq3 12 114868033 to 86349301 -28518732 QTL nociceptive sensitivity inflammatory QTL 3
Ighv1-35 12 114875302 to 114875597 295 - pseudogenic gene segment immunoglobulin heavy variable 1-35
Ighv1-36 12 114879888 to 114880181 293 - gene segment immunoglobulin heavy variable 1-36
Tssr118105 12 114880370 to 114880375 5 - TSS region transcription start site region 118105
Ighv1-37 12 114896238 to 114896531 293 - gene segment immunoglobulin heavy variable 1-37
Tssr3977 12 114896721 to 114896725 4 - TSS region transcription start site region 3977
Ighv1-38 12 114910011 to 114910303 292 - pseudogenic gene segment immunoglobulin heavy variable V1-38
Tssr118106 12 114910491 to 114910499 8 - TSS region transcription start site region 118106
Ighv1-39 12 114914599 to 114914892 293 - gene segment immunoglobulin heavy variable 1-39
Tssr118107 12 114915080 to 114915086 6 - TSS region transcription start site region 118107
Ighv1-40 12 114924941 to 114925233 292 - pseudogenic gene segment immunoglobulin heavy variable V1-40
Ighv1-41 12 114932371 to 114932664 293 - pseudogenic gene segment immunoglobulin heavy variable 1-41
Tssr115508 12 114932398 to 114932402 4 + TSS region transcription start site region 115508
Tssr118108 12 114932829 to 114932838 9 - TSS region transcription start site region 118108
Ighv1-42 12 114937154 to 114937544 390 - gene segment immunoglobulin heavy variable V1-42
Tssr118109 12 114937592 to 114937598 6 - TSS region transcription start site region 118109
Ighv1-43 12 114945950 to 114946243 293 - gene segment immunoglobulin heavy variable V1-43
Tssr118110 12 114946413 to 114946438 25 - TSS region transcription start site region 118110
Ighv1-44 12 114963380 to 114963674 294 - pseudogenic gene segment immunoglobulin heavy variable V1-44
Ighv1-45 12 114970055 to 114970348 293 - pseudogenic gene segment immunoglobulin heavy variable V1-45
Ighv1-46 12 114977693 to 114977986 293 - pseudogenic gene segment immunoglobulin heavy variable V1-46
Ighv1-47 12 114991108 to 114991401 293 - gene segment immunoglobulin heavy variable 1-47
Tssr118111 12 114991576 to 114991582 6 - TSS region transcription start site region 118111
Ighv8-3 12 115003418 to 115003712 294 - pseudogenic gene segment immunoglobulin heavy variable V8-3
Ighv8-4 12 115024026 to 115024318 292 - gene segment immunoglobulin heavy variable V8-4
Tssr118112 12 115024470 to 115024474 4 - TSS region transcription start site region 118112
Ighv1-48 12 115038227 to 115038520 293 - pseudogenic gene segment immunoglobulin heavy variable V1-48
Ighv1-49 12 115055223 to 115055516 293 - gene segment immunoglobulin heavy variable 1-49
Ighv8-5 12 115067560 to 115067860 300 - gene segment immunoglobulin heavy variable V8-5
Tssr118113 12 115068012 to 115068018 6 - TSS region transcription start site region 118113
Ighv1-50 12 115119748 to 115120041 293 - gene segment immunoglobulin heavy variable 1-50
Ighv1-51 12 115131375 to 115131668 293 - pseudogenic gene segment immunoglobulin heavy variable V1-51
Ighv1-52 12 115145487 to 115145780 293 - gene segment immunoglobulin heavy variable 1-52
Ighv1-53 12 115158445 to 115158835 390 - gene segment immunoglobulin heavy variable 1-53
Ighv8-6 12 115165777 to 115166077 300 - gene segment immunoglobulin heavy variable V8-6
Gm9227 12 115175975 to 115176356 381 + pseudogene predicted gene 9227
Ighv1-54 12 115193675 to 115193968 293 - gene segment immunoglobulin heavy variable V1-54
Tssr118114 12 115194119 to 115194126 7 - TSS region transcription start site region 118114
Tssr118115 12 115194143 to 115194169 26 - TSS region transcription start site region 118115
Ighv1-55 12 115208137 to 115208527 390 - gene segment immunoglobulin heavy variable 1-55
Tssr3978 12 115224782 to 115224788 6 + TSS region transcription start site region 3978
Gm7142 12 115224859 to 115225387 528 + pseudogene predicted gene 7142
Ighv1-56 12 115242802 to 115243095 293 - gene segment immunoglobulin heavy variable 1-56
Gm7019 12 115244185 to 115244553 368 - pseudogene predicted pseudogene 7019
Tssr115509 12 115258086 to 115258126 40 + TSS region transcription start site region 115509
Ighv8-7 12 115258139 to 115258432 293 - pseudogenic gene segment immunoglobulin heavy variable V8-7
Gm30948 12 115262684 to 115287908 25224 + lincRNA gene predicted gene, 30948
Ighv1-57 12 115268424 to 115268715 291 - pseudogenic gene segment immunoglobulin heavy variable V1-57
Ighv8-8 12 115294066 to 115294362 296 - gene segment immunoglobulin heavy variable 8-8
Tssr118116 12 115294483 to 115294518 35 - TSS region transcription start site region 118116
Ighv1-58 12 115312166 to 115312597 431 - gene segment immunoglobulin heavy variable 1-58
Tssr118117 12 115312648 to 115312655 7 - TSS region transcription start site region 118117
Ighv1-59 12 115335082 to 115335514 432 - gene segment immunoglobulin heavy variable V1-59
Ighv1-60 12 115344537 to 115344830 293 - pseudogenic gene segment immunoglobulin heavy variable V1-60
Ighv1-61 12 115359140 to 115359433 293 - gene segment immunoglobulin heavy variable 1-61
Ighv1-62 12 115371986 to 115372278 292 - pseudogenic gene segment immunoglobulin heavy variable V1-62
Tssr118118 12 115372460 to 115372488 28 - TSS region transcription start site region 118118
Ighv1-62-1 12 115386707 to 115386988 281 - gene segment immunoglobulin heavy variable 1-62-1
Gm19331 12 115386846 to 115397688 10842 + lincRNA gene predicted gene, 19331
Gm37511 12 115404431 to 115404724 293 - pseudogenic gene segment predicted gene, 37511
Gm30996 12 115407614 to 115428251 20637 + lncRNA gene predicted gene, 30996
Gm38184 12 115412927 to 115413123 196 - pseudogenic gene segment predicted gene, 38184
Ighv1-62-2 12 115446417 to 115446710 293 - gene segment immunoglobulin heavy variable 1-62-2
Tssr118119 12 115446877 to 115446905 28 - TSS region transcription start site region 118119
Ighv1-62-3 12 115460999 to 115461431 432 - gene segment immunoglobulin heavy variable 1-62-3
Ighv8-9 12 115468331 to 115468632 301 - gene segment immunoglobulin heavy variable V8-9
Gm9236 12 115476518 to 115476902 384 + pseudogene predicted gene 9236
Ighv1-63 12 115495625 to 115496058 433 - gene segment immunoglobulin heavy variable V1-63
Gm27722 12 115499019 to 115499094 75 - miRNA gene predicted gene, 27722
Ighv1-64 12 115507587 to 115507977 390 - gene segment immunoglobulin heavy variable 1-64
Tssr118120 12 115508014 to 115508034 20 - TSS region transcription start site region 118120
Ighv8-10 12 115519340 to 115519640 300 - pseudogenic gene segment immunoglobulin heavy variable V8-10
Gm18340 12 115526351 to 115526959 608 + pseudogene predicted gene, 18340
Ighv1-65 12 115532055 to 115532347 292 - pseudogenic gene segment immunoglobulin heavy variable V1-65
Gm9238 12 115546069 to 115546397 328 - pseudogene predicted gene 9238
Ighv8-11 12 115567149 to 115567449 300 - gene segment immunoglobulin heavy variable V8-11
Rpl7a-ps2 12 115590407 to 115591134 727 + pseudogene ribosomal protein L7A, pseudogene 2
Ighv1-66 12 115593110 to 115593403 293 - gene segment immunoglobulin heavy variable 1-66
Ighv1-67 12 115603940 to 115604233 293 - gene segment immunoglobulin heavy variable V1-67
Tssr118121 12 115604411 to 115604432 21 - TSS region transcription start site region 118121
Ighv1-68 12 115611340 to 115611633 293 - pseudogenic gene segment immunoglobulin heavy variable V1-68
Gm5660 12 115616135 to 115616803 668 + pseudogene predicted gene 5660
Gm9245 12 115617272 to 115617950 678 + pseudogene predicted gene 9245
Ighv1-69 12 115623203 to 115623595 392 - gene segment immunoglobulin heavy variable 1-69
Tssr3979 12 115623640 to 115623653 13 - TSS region transcription start site region 3979
Ighv8-12 12 115647945 to 115648245 300 - gene segment immunoglobulin heavy variable V8-12
Gm6105 12 115659264 to 115659788 524 + pseudogene predicted gene 6105
Gm44782 12 115688840 to 115688889 49 + pseudogene predicted gene 44782
Ighv1-70 12 115691889 to 115692182 293 - gene segment immunoglobulin heavy variable 1-70
Mir6388 12 115695720 to 115695794 74 - miRNA gene microRNA 6388
Gm40900 12 115703830 to 115715167 11337 + lncRNA gene predicted gene, 40900
Ighv1-71 12 115742205 to 115742506 301 - gene segment immunoglobulin heavy variable 1-71
Tssr118122 12 115742674 to 115742703 29 - TSS region transcription start site region 118122
Ighv1-72 12 115757984 to 115758277 293 - gene segment immunoglobulin heavy variable 1-72
Ighv8-13 12 115765335 to 115765635 300 - gene segment immunoglobulin heavy variable 8-13
Gm9251 12 115773343 to 115774991 1648 + pseudogene predicted gene 9251
Ighv1-73 12 115790593 to 115790887 294 - gene segment immunoglobulin heavy variable 1-73
Ighv1-74 12 115802690 to 115803080 390 - gene segment immunoglobulin heavy variable V1-74
Ighv8-14 12 115808427 to 115808727 300 - gene segment immunoglobulin heavy variable 8-14
Gm18341 12 115814954 to 115815575 621 + pseudogene predicted gene, 18341
Gm19843 12 115831276 to 115832047 771 + pseudogene predicted gene, 19843
Ighv1-75 12 115833950 to 115834243 293 - gene segment immunoglobulin heavy variable 1-75
Ighv8-15 12 115844016 to 115844309 293 - pseudogenic gene segment immunoglobulin heavy variable V8-15
Ighv1-76 12 115847881 to 115848174 293 - gene segment immunoglobulin heavy variable 1-76
Tssr3980 12 115848333 to 115848371 38 - TSS region transcription start site region 3980
Ighv8-16 12 115858008 to 115858301 293 - pseudogenic gene segment immunoglobulin heavy variable V8-16
Ighv1-77 12 115861867 to 115862160 293 - gene segment immunoglobulin heavy variable 1-77
Tssr118123 12 115862314 to 115862353 39 - TSS region transcription start site region 118123
Ighv1-78 12 115868773 to 115869066 293 - gene segment immunoglobulin heavy variable 1-78
Tssr118124 12 115869226 to 115869254 28 - TSS region transcription start site region 118124
Gm42643 12 115881779 to 115882057 278 - pseudogenic gene segment predicted gene 42643
Gm5034 12 115883640 to 115884273 633 - pseudogene predicted gene 5034
Ighv1-79 12 115888096 to 115888389 293 - gene segment immunoglobulin heavy variable 1-79
Gm9256 12 115892884 to 115894303 1419 + pseudogene predicted gene 9256
Ighv1-80 12 115912344 to 115912637 293 - gene segment immunoglobulin heavy variable 1-80
Tssr118125 12 115912792 to 115912797 5 - TSS region transcription start site region 118125
Tssr118126 12 115912816 to 115912839 23 - TSS region transcription start site region 118126
Ighv1-81 12 115920279 to 115920572 293 - gene segment immunoglobulin heavy variable 1-81
D12Mit150a 12 115921332 to 115921502 170 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 150a
Gm42990 12 115933180 to 115933491 311 - pseudogenic gene segment predicted gene 42990
Olfr241-ps1 12 115934272 to 115934904 632 - pseudogene olfactory receptor 241, pseudogene 1
Ighv1-82 12 115952538 to 115952831 293 - gene segment immunoglobulin heavy variable 1-82
Tssr118127 12 115952984 to 115953000 16 - TSS region transcription start site region 118127
Tssr118128 12 115953010 to 115953033 23 - TSS region transcription start site region 118128
Ighv1-83 12 115963817 to 115964109 292 - gene segment immunoglobulin heavy variable 1-83
D12Mit150b 12 115964872 to 115965031 159 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 150b
Ighv1-84 12 115980702 to 115981134 432 - gene segment immunoglobulin heavy variable 1-84
Tssr118129 12 115981176 to 115981188 12 - TSS region transcription start site region 118129
Gm9260 12 115992180 to 115993563 1383 - pseudogene predicted gene 9260
Cpgi5212 12 115993498 to 115993696 198 CpG island CpG island 5212
Ighv1-85 12 116000028 to 116000321 293 - gene segment immunoglobulin heavy variable 1-85
Tssr118130 12 116000506 to 116000516 10 - TSS region transcription start site region 118130
Ighv1-86 12 116009659 to 116009954 295 - gene segment immunoglobulin heavy variable 1-86
Tssr118131 12 116010137 to 116010141 4 - TSS region transcription start site region 118131
Cpgi5213 12 116047546 to 116048262 716 CpG island CpG island 5213
Zfp386 12 116047707 to 116063231 15524 + protein coding gene zinc finger protein 386 (Kruppel-like)
Tssr115510 12 116047713 to 116047807 94 + TSS region transcription start site region 115510
Tssr3981 12 116047813 to 116047825 12 + TSS region transcription start site region 3981
Tssr3982 12 116047827 to 116047836 9 + TSS region transcription start site region 3982
Tssr115511 12 116048007 to 116048070 63 + TSS region transcription start site region 115511
Tssr115512 12 116055345 to 116055351 6 + TSS region transcription start site region 115512
Gm46383 12 116075152 to 116078237 3085 - lncRNA gene predicted gene, 46383
Cpgi5214 12 116077543 to 116078255 712 CpG island CpG island 5214
Tssr115513 12 116077720 to 116077839 119 + TSS region transcription start site region 115513
Vipr2 12 116077726 to 116146261 68535 + protein coding gene vasoactive intestinal peptide receptor 2
Gm20658 12 116100553 to 116112310 11757 - antisense lncRNA gene predicted gene 20658
Tssr115514 12 116140942 to 116140955 13 + TSS region transcription start site region 115514
Tssr115515 12 116140968 to 116140979 11 + TSS region transcription start site region 115515
Tssr115516 12 116140983 to 116140993 10 + TSS region transcription start site region 115516
Gm48618 12 116151603 to 116152341 738 - pseudogene predicted gene, 48618
Gm44372 12 116152101 to 116152221 120 - miRNA gene predicted gene, 44372
Gm48620 12 116162988 to 116163809 821 - pseudogene predicted gene, 48620
Gm23732 12 116173313 to 116173419 106 + snRNA gene predicted gene, 23732
Gm46330 12 116196083 to 116197444 1361 + lncRNA gene predicted gene, 46330
Tssr118132 12 116200205 to 116200227 22 - TSS region transcription start site region 118132
Wdr60 12 116206262 to 116263022 56760 - protein coding gene WD repeat domain 60
Gm23190 12 116242504 to 116242567 63 - miRNA gene predicted gene, 23190
Tssr118133 12 116256032 to 116256046 14 - TSS region transcription start site region 118133
Cpgi5215 12 116262661 to 116263197 536 CpG island CpG island 5215
Tssr118134 12 116262946 to 116263046 100 - TSS region transcription start site region 118134
Gm11027 12 116275386 to 116275612 226 + protein coding gene predicted gene 11027
Gm48079 12 116279682 to 116280231 549 - lincRNA gene predicted gene, 48079