Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:114195680-115065973

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ighv3-3 12 114196439 to 114196875 436 - gene segment immunoglobulin heavy variable V3-3
Tssr118065 12 114196924 to 114196937 13 - TSS region transcription start site region 118065
Ighv7-4 12 114222788 to 114223254 466 - gene segment immunoglobulin heavy variable 7-4
Tssr118066 12 114223325 to 114223334 9 - TSS region transcription start site region 118066
Ighv3-4 12 114253617 to 114253915 298 - gene segment immunoglobulin heavy variable V3-4
Tssr118067 12 114254097 to 114254104 7 - TSS region transcription start site region 118067
Ighv3-5 12 114262652 to 114262950 298 - gene segment immunoglobulin heavy variable 3-5
Tssr118068 12 114263138 to 114263145 7 - TSS region transcription start site region 118068
Gm18551 12 114265607 to 114266248 641 - pseudogene predicted gene, 18551
Ighv13-1 12 114267613 to 114267906 293 - gene segment immunoglobulin heavy variable 13-1
Ighv3-6 12 114288152 to 114288447 295 - gene segment immunoglobulin heavy variable 3-6
Tssr118069 12 114288626 to 114288643 17 - TSS region transcription start site region 118069
Ighv9-4 12 114299961 to 114300254 293 - gene segment immunoglobulin heavy variable 9-4
Tssr118070 12 114300418 to 114300453 35 - TSS region transcription start site region 118070
Ighv3-7 12 114314186 to 114314479 293 - pseudogenic gene segment immunoglobulin heavy variable V3-7
Ighv5-21 12 114320030 to 114320324 294 - pseudogenic gene segment immunoglobulin heavy variable V5-21
Ighv3-8 12 114322376 to 114322666 290 - gene segment immunoglobulin heavy variable V3-8
Tssr118071 12 114322844 to 114322860 16 - TSS region transcription start site region 118071
Tssr115507 12 114323025 to 114323037 12 + TSS region transcription start site region 115507
Ighv8-1 12 114332796 to 114333086 290 - pseudogenic gene segment immunoglobulin heavy variable V8-1
Ighv1-1 12 114351705 to 114351995 290 - pseudogenic gene segment immunoglobulin heavy variable V1-1
Ighv13-2 12 114357761 to 114358060 299 - gene segment immunoglobulin heavy variable 13-2
Tssr118072 12 114358256 to 114358270 14 - TSS region transcription start site region 118072
Tssr118073 12 114358280 to 114358292 12 - TSS region transcription start site region 118073
Ighv12-3 12 114366526 to 114366819 293 - gene segment immunoglobulin heavy variable V12-3
Tssr118074 12 114367007 to 114367012 5 - TSS region transcription start site region 118074
Cpgi5211 12 114378728 to 114379344 616 CpG island CpG island 5211
Ighv6-3 12 114391712 to 114392010 298 - gene segment immunoglobulin heavy variable 6-3
Tssr118075 12 114392214 to 114392226 12 - TSS region transcription start site region 118075
Tssr118076 12 114392231 to 114392247 16 - TSS region transcription start site region 118076
Ighv6-4 12 114406474 to 114406773 299 - gene segment immunoglobulin heavy variable V6-4
Tssr118077 12 114407025 to 114407033 8 - TSS region transcription start site region 118077
Ighv6-5 12 114416596 to 114416895 299 - gene segment immunoglobulin heavy variable V6-5
Ighv6-6 12 114434788 to 114435087 299 - gene segment immunoglobulin heavy variable 6-6
Tssr118078 12 114435304 to 114435319 15 - TSS region transcription start site region 118078
Ighv6-7 12 114455626 to 114455925 299 - gene segment immunoglobulin heavy variable V6-7
Tssr118079 12 114456132 to 114456157 25 - TSS region transcription start site region 118079
Ighv8-2 12 114462290 to 114462589 299 - gene segment immunoglobulin heavy variable V8-2
Tssr118080 12 114462737 to 114462745 8 - TSS region transcription start site region 118080
Ighv1-2 12 114469075 to 114469371 296 - pseudogenic gene segment immunoglobulin heavy variable 1-2
Mir7094-1 12 114469407 to 114469466 59 - miRNA gene microRNA 7094-1
Tssr118081 12 114469560 to 114469588 28 - TSS region transcription start site region 118081
Ighv10-1 12 114479007 to 114479451 444 - gene segment immunoglobulin heavy variable 10-1
Tssr3975 12 114479491 to 114479496 5 - TSS region transcription start site region 3975
Tssr118082 12 114479506 to 114479521 15 - TSS region transcription start site region 118082
Ighv1-3 12 114481615 to 114481916 301 - pseudogenic gene segment immunoglobulin heavy variable V1-3
Ighv1-4 12 114487136 to 114487429 293 - gene segment immunoglobulin heavy variable 1-4
Tssr118083 12 114487615 to 114487622 7 - TSS region transcription start site region 118083
Ighv10-2 12 114496003 to 114496300 297 - pseudogenic gene segment immunoglobulin heavy variable V10-2
Ighv1-5 12 114513330 to 114513623 293 - gene segment immunoglobulin heavy variable V1-5
Mir7094-2 12 114513635 to 114513694 59 - miRNA gene microRNA 7094-2
Tssr118084 12 114513785 to 114513798 13 - TSS region transcription start site region 118084
Tssr118085 12 114513807 to 114513822 15 - TSS region transcription start site region 118085
D12Mit208 12 114514193 to 114514326 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 208
Ighv10-3 12 114523441 to 114523887 446 - gene segment immunoglobulin heavy variable V10-3
Tssr118086 12 114523943 to 114523959 16 - TSS region transcription start site region 118086
Ighv1-6 12 114532972 to 114533264 292 - pseudogenic gene segment immunoglobulin heavy variable V1-6
Ighv1-7 12 114538495 to 114538788 293 - gene segment immunoglobulin heavy variable V1-7
Tssr118087 12 114538970 to 114538982 12 - TSS region transcription start site region 118087
Ighv10-4 12 114547258 to 114547556 298 - pseudogenic gene segment immunoglobulin heavy variable V10-4
Ighv1-8 12 114555610 to 114555902 292 - pseudogenic gene segment immunoglobulin heavy variable V1-8
Ighv15-2 12 114564578 to 114564874 296 - gene segment immunoglobulin heavy variable V15-2
Tssr118088 12 114565045 to 114565056 11 - TSS region transcription start site region 118088
Ighv1-9 12 114583569 to 114583862 293 - gene segment immunoglobulin heavy variable V1-9
Tssr118089 12 114584015 to 114584022 7 - TSS region transcription start site region 118089
Tssr118090 12 114584034 to 114584063 29 - TSS region transcription start site region 118090
Ighv1-10 12 114597878 to 114598175 297 - pseudogenic gene segment immunoglobulin heavy variable V1-10
Ighv1-11 12 114612244 to 114612536 292 - gene segment immunoglobulin heavy variable V1-11
Tssr118091 12 114612693 to 114612729 36 - TSS region transcription start site region 118091
Ighv1-12 12 114615850 to 114616143 293 - gene segment immunoglobulin heavy variable V1-12
Ighv1-13 12 114630680 to 114630973 293 - pseudogenic gene segment immunoglobulin heavy variable V1-13
Ighv1-14 12 114646572 to 114646865 293 - gene segment immunoglobulin heavy variable 1-14
Tssr118092 12 114647054 to 114647057 3 - TSS region transcription start site region 118092
Ighv1-15 12 114657353 to 114657646 293 - gene segment immunoglobulin heavy variable 1-15
Ighv1-16 12 114665872 to 114666165 293 - gene segment immunoglobulin heavy variable 1-16
Gm46322 12 114671223 to 114671404 181 + pseudogene predicted gene, 46322
Ighv1-17-1 12 114671968 to 114672262 294 - pseudogenic gene segment immunoglobulin heavy variable V1-17-1
Ighv1-17 12 114676749 to 114677042 293 - pseudogenic gene segment immunoglobulin heavy variable 1-17
Ighv1-18 12 114682632 to 114682925 293 - gene segment immunoglobulin heavy variable V1-18
Tssr118093 12 114683112 to 114683118 6 - TSS region transcription start site region 118093
Ighv1-19-1 12 114704147 to 114704440 293 - gene segment immunoglobulin heavy variable 1-19-1
Ighv1-19 12 114708648 to 114708941 293 - gene segment immunoglobulin heavy variable V1-19
Tssr118094 12 114709130 to 114709135 5 - TSS region transcription start site region 118094
Ighv1-20 12 114723772 to 114724065 293 - gene segment immunoglobulin heavy variable V1-20
Ighv1-21-1 12 114736245 to 114736538 293 - pseudogenic gene segment immunoglobulin heavy variable 1-21-1
Tssr118095 12 114736727 to 114736734 7 - TSS region transcription start site region 118095
Ighv1-21 12 114740408 to 114740841 433 - pseudogenic gene segment immunoglobulin heavy variable V1-21
Tssr118096 12 114740889 to 114740892 3 - TSS region transcription start site region 118096
Ighv1-22 12 114746273 to 114746566 293 - gene segment immunoglobulin heavy variable 1-22
Tssr118097 12 114746754 to 114746761 7 - TSS region transcription start site region 118097
Ighv1-23 12 114764450 to 114764743 293 - gene segment immunoglobulin heavy variable V1-23
Gm40899 12 114764738 to 114779554 14816 + lncRNA gene predicted gene, 40899
Tssr118098 12 114764895 to 114764911 16 - TSS region transcription start site region 118098
Ighv1-24 12 114772928 to 114773221 293 - gene segment immunoglobulin heavy variable V1-24
Ighv1-25 12 114781409 to 114781702 293 - pseudogenic gene segment immunoglobulin heavy variable 1-25
Ighv1-26 12 114788372 to 114788665 293 - gene segment immunoglobulin heavy variable 1-26
Tssr118099 12 114788853 to 114788861 8 - TSS region transcription start site region 118099
Ighv1-27 12 114804616 to 114804909 293 - pseudogenic gene segment immunoglobulin heavy variable V1-27
Gm34465 12 114808833 to 114811764 2931 + pseudogene predicted gene, 34465
Ighv1-28 12 114809421 to 114809714 293 - pseudogenic gene segment immunoglobulin heavy variable 1-28
Tssr118100 12 114809903 to 114809909 6 - TSS region transcription start site region 118100
Ighv1-29 12 114812321 to 114812605 284 - pseudogenic gene segment immunoglobulin heavy variable V1-29
Tssr118101 12 114812798 to 114812805 7 - TSS region transcription start site region 118101
Ighv1-30 12 114817099 to 114817390 291 - pseudogenic gene segment immunoglobulin heavy variable 1-30
Ighv1-31 12 114829264 to 114829557 293 - gene segment immunoglobulin heavy variable 1-31
Tssr118102 12 114829743 to 114829749 6 - TSS region transcription start site region 118102
Ighv1-32 12 114835223 to 114835516 293 - pseudogenic gene segment immunoglobulin heavy variable V1-32
Tssr118103 12 114835695 to 114835710 15 - TSS region transcription start site region 118103
Ighv1-33 12 114843693 to 114844083 390 - pseudogenic gene segment immunoglobulin heavy variable 1-33
Tssr3976 12 114844133 to 114844139 6 - TSS region transcription start site region 3976
Ighv1-34 12 114851190 to 114851483 293 - gene segment immunoglobulin heavy variable 1-34
Tssr118104 12 114851671 to 114851678 7 - TSS region transcription start site region 118104
D12Mit134 12 114867852 to 114868033 181 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 134
Nociq3 12 114868033 to 86349301 -28518732 QTL nociceptive sensitivity inflammatory QTL 3
Ighv1-35 12 114875302 to 114875597 295 - pseudogenic gene segment immunoglobulin heavy variable 1-35
Ighv1-36 12 114879888 to 114880181 293 - gene segment immunoglobulin heavy variable 1-36
Tssr118105 12 114880370 to 114880375 5 - TSS region transcription start site region 118105
Ighv1-37 12 114896238 to 114896531 293 - gene segment immunoglobulin heavy variable 1-37
Tssr3977 12 114896721 to 114896725 4 - TSS region transcription start site region 3977
Ighv1-38 12 114910011 to 114910303 292 - pseudogenic gene segment immunoglobulin heavy variable V1-38
Tssr118106 12 114910491 to 114910499 8 - TSS region transcription start site region 118106
Ighv1-39 12 114914599 to 114914892 293 - gene segment immunoglobulin heavy variable 1-39
Tssr118107 12 114915080 to 114915086 6 - TSS region transcription start site region 118107
Ighv1-40 12 114924941 to 114925233 292 - pseudogenic gene segment immunoglobulin heavy variable V1-40
Ighv1-41 12 114932371 to 114932664 293 - pseudogenic gene segment immunoglobulin heavy variable 1-41
Tssr115508 12 114932398 to 114932402 4 + TSS region transcription start site region 115508
Tssr118108 12 114932829 to 114932838 9 - TSS region transcription start site region 118108
Ighv1-42 12 114937154 to 114937544 390 - gene segment immunoglobulin heavy variable V1-42
Tssr118109 12 114937592 to 114937598 6 - TSS region transcription start site region 118109
Ighv1-43 12 114945950 to 114946243 293 - gene segment immunoglobulin heavy variable V1-43
Tssr118110 12 114946413 to 114946438 25 - TSS region transcription start site region 118110
Ighv1-44 12 114963380 to 114963674 294 - pseudogenic gene segment immunoglobulin heavy variable V1-44
Ighv1-45 12 114970055 to 114970348 293 - pseudogenic gene segment immunoglobulin heavy variable V1-45
Ighv1-46 12 114977693 to 114977986 293 - pseudogenic gene segment immunoglobulin heavy variable V1-46
Ighv1-47 12 114991108 to 114991401 293 - gene segment immunoglobulin heavy variable 1-47
Tssr118111 12 114991576 to 114991582 6 - TSS region transcription start site region 118111
Ighv8-3 12 115003418 to 115003712 294 - pseudogenic gene segment immunoglobulin heavy variable V8-3
Ighv8-4 12 115024026 to 115024318 292 - gene segment immunoglobulin heavy variable V8-4
Tssr118112 12 115024470 to 115024474 4 - TSS region transcription start site region 118112
Ighv1-48 12 115038227 to 115038520 293 - pseudogenic gene segment immunoglobulin heavy variable V1-48
Ighv1-49 12 115055223 to 115055516 293 - gene segment immunoglobulin heavy variable 1-49