Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:113963256-114753270

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ighv3-1 12 113964390 to 113964683 293 - gene segment immunoglobulin heavy variable 3-1
Tssr118055 12 113964865 to 113964874 9 - TSS region transcription start site region 118055
Gm37961 12 113968554 to 113968852 298 - pseudogenic gene segment predicted gene, 37961
Ighv11-1 12 113981879 to 113982174 295 - gene segment immunoglobulin heavy variable 11-1
Ighv14-2 12 113994469 to 113994898 429 - gene segment immunoglobulin heavy variable 14-2
Tssr118056 12 113994940 to 113994949 9 - TSS region transcription start site region 118056
Ighv4-2 12 114013144 to 114013439 295 - pseudogenic gene segment immunoglobulin heavy variable V4-2
Ighv3-2 12 114033803 to 114034097 294 - pseudogenic gene segment immunoglobulin heavy variable 3-2
Ighv11-2 12 114048241 to 114048704 463 - gene segment immunoglobulin heavy variable V11-2
Tssr118057 12 114048736 to 114048746 10 - TSS region transcription start site region 118057
Tssr118058 12 114048748 to 114048769 21 - TSS region transcription start site region 118058
Tssr3974 12 114048779 to 114048780 1 - TSS region transcription start site region 3974
Ighv14-3 12 114059845 to 114060273 428 - gene segment immunoglobulin heavy variable V14-3
Tssr118059 12 114060315 to 114060322 7 - TSS region transcription start site region 118059
Ighv16-1 12 114068828 to 114069126 298 - gene segment immunoglobulin heavy variable 16-1
Ighv6-2 12 114089387 to 114089681 294 - pseudogenic gene segment immunoglobulin heavy variable V6-2
Ighv9-1 12 114093928 to 114094221 293 - gene segment immunoglobulin heavy variable 9-1
Ighv12-1 12 114107259 to 114107563 304 - pseudogenic gene segment immunoglobulin heavy variable V12-1
Ighv9-2 12 114109001 to 114109430 429 - gene segment immunoglobulin heavy variable V9-2
Tssr118060 12 114109460 to 114109493 33 - TSS region transcription start site region 118060
Ighv12-2 12 114127533 to 114127984 451 - pseudogenic gene segment immunoglobulin heavy variable V12-2
Tssr118061 12 114128016 to 114128045 29 - TSS region transcription start site region 118061
Ighv9-3 12 114140692 to 114141122 430 - gene segment immunoglobulin heavy variable V9-3
Tssr118062 12 114141122 to 114141133 11 - TSS region transcription start site region 118062
Ighv7-3 12 114153180 to 114153644 464 - pseudogenic gene segment immunoglobulin heavy variable 7-3
Tssr118063 12 114153714 to 114153724 10 - TSS region transcription start site region 118063
Ighv15-1 12 114158040 to 114158315 275 - pseudogenic gene segment immunoglobulin heavy variable V15-1
Ighv14-4 12 114176438 to 114176867 429 - gene segment immunoglobulin heavy variable 14-4
Tssr118064 12 114176909 to 114176918 9 - TSS region transcription start site region 118064
Gm37838 12 114188689 to 114189000 311 - pseudogene predicted gene, 37838
Ighv3-3 12 114196439 to 114196875 436 - gene segment immunoglobulin heavy variable V3-3
Tssr118065 12 114196924 to 114196937 13 - TSS region transcription start site region 118065
Ighv7-4 12 114222788 to 114223254 466 - gene segment immunoglobulin heavy variable 7-4
Tssr118066 12 114223325 to 114223334 9 - TSS region transcription start site region 118066
Ighv3-4 12 114253617 to 114253915 298 - gene segment immunoglobulin heavy variable V3-4
Tssr118067 12 114254097 to 114254104 7 - TSS region transcription start site region 118067
Ighv3-5 12 114262652 to 114262950 298 - gene segment immunoglobulin heavy variable 3-5
Tssr118068 12 114263138 to 114263145 7 - TSS region transcription start site region 118068
Gm18551 12 114265607 to 114266248 641 - pseudogene predicted gene, 18551
Ighv13-1 12 114267613 to 114267906 293 - gene segment immunoglobulin heavy variable 13-1
Ighv3-6 12 114288152 to 114288447 295 - gene segment immunoglobulin heavy variable 3-6
Tssr118069 12 114288626 to 114288643 17 - TSS region transcription start site region 118069
Ighv9-4 12 114299961 to 114300254 293 - gene segment immunoglobulin heavy variable 9-4
Tssr118070 12 114300418 to 114300453 35 - TSS region transcription start site region 118070
Ighv3-7 12 114314186 to 114314479 293 - pseudogenic gene segment immunoglobulin heavy variable V3-7
Ighv5-21 12 114320030 to 114320324 294 - pseudogenic gene segment immunoglobulin heavy variable V5-21
Ighv3-8 12 114322376 to 114322666 290 - gene segment immunoglobulin heavy variable V3-8
Tssr118071 12 114322844 to 114322860 16 - TSS region transcription start site region 118071
Tssr115507 12 114323025 to 114323037 12 + TSS region transcription start site region 115507
Ighv8-1 12 114332796 to 114333086 290 - pseudogenic gene segment immunoglobulin heavy variable V8-1
Ighv1-1 12 114351705 to 114351995 290 - pseudogenic gene segment immunoglobulin heavy variable V1-1
Ighv13-2 12 114357761 to 114358060 299 - gene segment immunoglobulin heavy variable 13-2
Tssr118072 12 114358256 to 114358270 14 - TSS region transcription start site region 118072
Tssr118073 12 114358280 to 114358292 12 - TSS region transcription start site region 118073
Ighv12-3 12 114366526 to 114366819 293 - gene segment immunoglobulin heavy variable V12-3
Tssr118074 12 114367007 to 114367012 5 - TSS region transcription start site region 118074
Cpgi5211 12 114378728 to 114379344 616 CpG island CpG island 5211
Ighv6-3 12 114391712 to 114392010 298 - gene segment immunoglobulin heavy variable 6-3
Tssr118075 12 114392214 to 114392226 12 - TSS region transcription start site region 118075
Tssr118076 12 114392231 to 114392247 16 - TSS region transcription start site region 118076
Ighv6-4 12 114406474 to 114406773 299 - gene segment immunoglobulin heavy variable V6-4
Tssr118077 12 114407025 to 114407033 8 - TSS region transcription start site region 118077
Ighv6-5 12 114416596 to 114416895 299 - gene segment immunoglobulin heavy variable V6-5
Ighv6-6 12 114434788 to 114435087 299 - gene segment immunoglobulin heavy variable 6-6
Tssr118078 12 114435304 to 114435319 15 - TSS region transcription start site region 118078
Ighv6-7 12 114455626 to 114455925 299 - gene segment immunoglobulin heavy variable V6-7
Tssr118079 12 114456132 to 114456157 25 - TSS region transcription start site region 118079
Ighv8-2 12 114462290 to 114462589 299 - gene segment immunoglobulin heavy variable V8-2
Tssr118080 12 114462737 to 114462745 8 - TSS region transcription start site region 118080
Ighv1-2 12 114469075 to 114469371 296 - pseudogenic gene segment immunoglobulin heavy variable 1-2
Mir7094-1 12 114469407 to 114469466 59 - miRNA gene microRNA 7094-1
Tssr118081 12 114469560 to 114469588 28 - TSS region transcription start site region 118081
Ighv10-1 12 114479007 to 114479451 444 - gene segment immunoglobulin heavy variable 10-1
Tssr3975 12 114479491 to 114479496 5 - TSS region transcription start site region 3975
Tssr118082 12 114479506 to 114479521 15 - TSS region transcription start site region 118082
Ighv1-3 12 114481615 to 114481916 301 - pseudogenic gene segment immunoglobulin heavy variable V1-3
Ighv1-4 12 114487136 to 114487429 293 - gene segment immunoglobulin heavy variable 1-4
Tssr118083 12 114487615 to 114487622 7 - TSS region transcription start site region 118083
Ighv10-2 12 114496003 to 114496300 297 - pseudogenic gene segment immunoglobulin heavy variable V10-2
Ighv1-5 12 114513330 to 114513623 293 - gene segment immunoglobulin heavy variable V1-5
Mir7094-2 12 114513635 to 114513694 59 - miRNA gene microRNA 7094-2
Tssr118084 12 114513785 to 114513798 13 - TSS region transcription start site region 118084
Tssr118085 12 114513807 to 114513822 15 - TSS region transcription start site region 118085
D12Mit208 12 114514193 to 114514326 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 208
Ighv10-3 12 114523441 to 114523887 446 - gene segment immunoglobulin heavy variable V10-3
Tssr118086 12 114523943 to 114523959 16 - TSS region transcription start site region 118086
Ighv1-6 12 114532972 to 114533264 292 - pseudogenic gene segment immunoglobulin heavy variable V1-6
Ighv1-7 12 114538495 to 114538788 293 - gene segment immunoglobulin heavy variable V1-7
Tssr118087 12 114538970 to 114538982 12 - TSS region transcription start site region 118087
Ighv10-4 12 114547258 to 114547556 298 - pseudogenic gene segment immunoglobulin heavy variable V10-4
Ighv1-8 12 114555610 to 114555902 292 - pseudogenic gene segment immunoglobulin heavy variable V1-8
Ighv15-2 12 114564578 to 114564874 296 - gene segment immunoglobulin heavy variable V15-2
Tssr118088 12 114565045 to 114565056 11 - TSS region transcription start site region 118088
Ighv1-9 12 114583569 to 114583862 293 - gene segment immunoglobulin heavy variable V1-9
Tssr118089 12 114584015 to 114584022 7 - TSS region transcription start site region 118089
Tssr118090 12 114584034 to 114584063 29 - TSS region transcription start site region 118090
Ighv1-10 12 114597878 to 114598175 297 - pseudogenic gene segment immunoglobulin heavy variable V1-10
Ighv1-11 12 114612244 to 114612536 292 - gene segment immunoglobulin heavy variable V1-11
Tssr118091 12 114612693 to 114612729 36 - TSS region transcription start site region 118091
Ighv1-12 12 114615850 to 114616143 293 - gene segment immunoglobulin heavy variable V1-12
Ighv1-13 12 114630680 to 114630973 293 - pseudogenic gene segment immunoglobulin heavy variable V1-13
Ighv1-14 12 114646572 to 114646865 293 - gene segment immunoglobulin heavy variable 1-14
Tssr118092 12 114647054 to 114647057 3 - TSS region transcription start site region 118092
Ighv1-15 12 114657353 to 114657646 293 - gene segment immunoglobulin heavy variable 1-15
Ighv1-16 12 114665872 to 114666165 293 - gene segment immunoglobulin heavy variable 1-16
Gm46322 12 114671223 to 114671404 181 + pseudogene predicted gene, 46322
Ighv1-17-1 12 114671968 to 114672262 294 - pseudogenic gene segment immunoglobulin heavy variable V1-17-1
Ighv1-17 12 114676749 to 114677042 293 - pseudogenic gene segment immunoglobulin heavy variable 1-17
Ighv1-18 12 114682632 to 114682925 293 - gene segment immunoglobulin heavy variable V1-18
Tssr118093 12 114683112 to 114683118 6 - TSS region transcription start site region 118093
Ighv1-19-1 12 114704147 to 114704440 293 - gene segment immunoglobulin heavy variable 1-19-1
Ighv1-19 12 114708648 to 114708941 293 - gene segment immunoglobulin heavy variable V1-19
Tssr118094 12 114709130 to 114709135 5 - TSS region transcription start site region 118094
Ighv1-20 12 114723772 to 114724065 293 - gene segment immunoglobulin heavy variable V1-20
Ighv1-21-1 12 114736245 to 114736538 293 - pseudogenic gene segment immunoglobulin heavy variable 1-21-1
Tssr118095 12 114736727 to 114736734 7 - TSS region transcription start site region 118095
Ighv1-21 12 114740408 to 114740841 433 - pseudogenic gene segment immunoglobulin heavy variable V1-21
Tssr118096 12 114740889 to 114740892 3 - TSS region transcription start site region 118096
Ighv1-22 12 114746273 to 114746566 293 - gene segment immunoglobulin heavy variable 1-22
Tssr118097 12 114746754 to 114746761 7 - TSS region transcription start site region 118097