Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:113847533-114407984

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ighv5-17 12 113859149 to 113859442 293 - gene segment immunoglobulin heavy variable 5-17
Tssr118051 12 113859682 to 113859700 18 - TSS region transcription start site region 118051
Ighv5-18 12 113875796 to 113876239 443 - pseudogenic gene segment immunoglobulin heavy variable V5-18
Ighv2-8 12 113877361 to 113877659 298 - pseudogenic gene segment immunoglobulin heavy variable V2-8
Ighv2-9 12 113879097 to 113879388 291 - gene segment immunoglobulin heavy variable 2-9
Tssr118052 12 113879554 to 113879558 4 - TSS region transcription start site region 118052
Ighv5-19 12 113884761 to 113885057 296 - pseudogenic gene segment immunoglobulin heavy variable V5-19
Ighv7-1 12 113896408 to 113896946 538 - pseudogenic gene segment immunoglobulin heavy variable 7-1
D12Nds2 12 113896717 to 113896905 188 DNA segment DNA segment, Chr 12, Nuffield Department of Surgery 2
Im6 12 113896717 to 113896905 188 QTL immunoregulatory 6
Sluc12 12 113896717 to 113896905 188 QTL susceptibility to lung cancer 12
Tssr115506 12 113896919 to 113896922 3 + TSS region transcription start site region 115506
Tssr118053 12 113897004 to 113897010 6 - TSS region transcription start site region 118053
Ighv7-2 12 113912025 to 113912483 458 - gene segment immunoglobulin heavy variable 7-2
Ighv14-1 12 113931953 to 113932246 293 - gene segment immunoglobulin heavy variable 14-1
Tssr118054 12 113932424 to 113932432 8 - TSS region transcription start site region 118054
Ighv4-1 12 113948284 to 113948577 293 - gene segment immunoglobulin heavy variable 4-1
Ighv3-1 12 113964390 to 113964683 293 - gene segment immunoglobulin heavy variable 3-1
Tssr118055 12 113964865 to 113964874 9 - TSS region transcription start site region 118055
Gm37961 12 113968554 to 113968852 298 - pseudogenic gene segment predicted gene, 37961
Ighv11-1 12 113981879 to 113982174 295 - gene segment immunoglobulin heavy variable 11-1
Ighv14-2 12 113994469 to 113994898 429 - gene segment immunoglobulin heavy variable 14-2
Tssr118056 12 113994940 to 113994949 9 - TSS region transcription start site region 118056
Ighv4-2 12 114013144 to 114013439 295 - pseudogenic gene segment immunoglobulin heavy variable V4-2
Ighv3-2 12 114033803 to 114034097 294 - pseudogenic gene segment immunoglobulin heavy variable 3-2
Ighv11-2 12 114048241 to 114048704 463 - gene segment immunoglobulin heavy variable V11-2
Tssr118057 12 114048736 to 114048746 10 - TSS region transcription start site region 118057
Tssr118058 12 114048748 to 114048769 21 - TSS region transcription start site region 118058
Tssr3974 12 114048779 to 114048780 1 - TSS region transcription start site region 3974
Ighv14-3 12 114059845 to 114060273 428 - gene segment immunoglobulin heavy variable V14-3
Tssr118059 12 114060315 to 114060322 7 - TSS region transcription start site region 118059
Ighv16-1 12 114068828 to 114069126 298 - gene segment immunoglobulin heavy variable 16-1
Ighv6-2 12 114089387 to 114089681 294 - pseudogenic gene segment immunoglobulin heavy variable V6-2
Ighv9-1 12 114093928 to 114094221 293 - gene segment immunoglobulin heavy variable 9-1
Ighv12-1 12 114107259 to 114107563 304 - pseudogenic gene segment immunoglobulin heavy variable V12-1
Ighv9-2 12 114109001 to 114109430 429 - gene segment immunoglobulin heavy variable V9-2
Tssr118060 12 114109460 to 114109493 33 - TSS region transcription start site region 118060
Ighv12-2 12 114127533 to 114127984 451 - pseudogenic gene segment immunoglobulin heavy variable V12-2
Tssr118061 12 114128016 to 114128045 29 - TSS region transcription start site region 118061
Ighv9-3 12 114140692 to 114141122 430 - gene segment immunoglobulin heavy variable V9-3
Tssr118062 12 114141122 to 114141133 11 - TSS region transcription start site region 118062
Ighv7-3 12 114153180 to 114153644 464 - pseudogenic gene segment immunoglobulin heavy variable 7-3
Tssr118063 12 114153714 to 114153724 10 - TSS region transcription start site region 118063
Ighv15-1 12 114158040 to 114158315 275 - pseudogenic gene segment immunoglobulin heavy variable V15-1
Ighv14-4 12 114176438 to 114176867 429 - gene segment immunoglobulin heavy variable 14-4
Tssr118064 12 114176909 to 114176918 9 - TSS region transcription start site region 118064
Gm37838 12 114188689 to 114189000 311 - pseudogene predicted gene, 37838
Ighv3-3 12 114196439 to 114196875 436 - gene segment immunoglobulin heavy variable V3-3
Tssr118065 12 114196924 to 114196937 13 - TSS region transcription start site region 118065
Ighv7-4 12 114222788 to 114223254 466 - gene segment immunoglobulin heavy variable 7-4
Tssr118066 12 114223325 to 114223334 9 - TSS region transcription start site region 118066
Ighv3-4 12 114253617 to 114253915 298 - gene segment immunoglobulin heavy variable V3-4
Tssr118067 12 114254097 to 114254104 7 - TSS region transcription start site region 118067
Ighv3-5 12 114262652 to 114262950 298 - gene segment immunoglobulin heavy variable 3-5
Tssr118068 12 114263138 to 114263145 7 - TSS region transcription start site region 118068
Gm18551 12 114265607 to 114266248 641 - pseudogene predicted gene, 18551
Ighv13-1 12 114267613 to 114267906 293 - gene segment immunoglobulin heavy variable 13-1
Ighv3-6 12 114288152 to 114288447 295 - gene segment immunoglobulin heavy variable 3-6
Tssr118069 12 114288626 to 114288643 17 - TSS region transcription start site region 118069
Ighv9-4 12 114299961 to 114300254 293 - gene segment immunoglobulin heavy variable 9-4
Tssr118070 12 114300418 to 114300453 35 - TSS region transcription start site region 118070
Ighv3-7 12 114314186 to 114314479 293 - pseudogenic gene segment immunoglobulin heavy variable V3-7
Ighv5-21 12 114320030 to 114320324 294 - pseudogenic gene segment immunoglobulin heavy variable V5-21
Ighv3-8 12 114322376 to 114322666 290 - gene segment immunoglobulin heavy variable V3-8
Tssr118071 12 114322844 to 114322860 16 - TSS region transcription start site region 118071
Tssr115507 12 114323025 to 114323037 12 + TSS region transcription start site region 115507
Ighv8-1 12 114332796 to 114333086 290 - pseudogenic gene segment immunoglobulin heavy variable V8-1
Ighv1-1 12 114351705 to 114351995 290 - pseudogenic gene segment immunoglobulin heavy variable V1-1
Ighv13-2 12 114357761 to 114358060 299 - gene segment immunoglobulin heavy variable 13-2
Tssr118072 12 114358256 to 114358270 14 - TSS region transcription start site region 118072
Tssr118073 12 114358280 to 114358292 12 - TSS region transcription start site region 118073
Ighv12-3 12 114366526 to 114366819 293 - gene segment immunoglobulin heavy variable V12-3
Tssr118074 12 114367007 to 114367012 5 - TSS region transcription start site region 118074
Cpgi5211 12 114378728 to 114379344 616 CpG island CpG island 5211
Ighv6-3 12 114391712 to 114392010 298 - gene segment immunoglobulin heavy variable 6-3
Tssr118075 12 114392214 to 114392226 12 - TSS region transcription start site region 118075
Tssr118076 12 114392231 to 114392247 16 - TSS region transcription start site region 118076
Ighv6-4 12 114406474 to 114406773 299 - gene segment immunoglobulin heavy variable V6-4
Tssr118077 12 114407025 to 114407033 8 - TSS region transcription start site region 118077