Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:113604845-114515273

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ighv2-3 12 113611184 to 113611476 292 - gene segment immunoglobulin heavy variable 2-3
Tssr118043 12 113611643 to 113611648 5 - TSS region transcription start site region 118043
Ighv5-5 12 113612989 to 113613442 453 - pseudogenic gene segment immunoglobulin heavy variable V5-5
Ighv5-6 12 113625508 to 113625801 293 - gene segment immunoglobulin heavy variable 5-6
Tssr118044 12 113626023 to 113626037 14 - TSS region transcription start site region 118044
Gm9517 12 113629994 to 113630867 873 - pseudogene predicted gene 9517
Ighv5-7 12 113634686 to 113634981 295 - pseudogenic gene segment immunoglobulin heavy variable V5-7
Ighv2-4 12 113653291 to 113653583 292 - gene segment immunoglobulin heavy variable V2-4
Ighv5-8 12 113654967 to 113655245 278 - pseudogenic gene segment immunoglobulin heavy variable V5-8
Ighv5-9 12 113661771 to 113662228 457 - gene segment immunoglobulin heavy variable 5-9
Tssr118045 12 113662293 to 113662309 16 - TSS region transcription start site region 118045
Ighv5-10 12 113669673 to 113669968 295 - pseudogenic gene segment immunoglobulin heavy variable 5-10
Gm37187 12 113682466 to 113682891 425 - pseudogenic gene segment predicted gene, 37187
Ighv2-5 12 113685482 to 113685774 292 - gene segment immunoglobulin heavy variable 2-5
Ighv5-11 12 113687229 to 113687505 276 - pseudogenic gene segment immunoglobulin heavy variable V5-11
Ighv5-12 12 113702126 to 113702419 293 - gene segment immunoglobulin heavy variable 5-12
Tssr118046 12 113702651 to 113702662 11 - TSS region transcription start site region 118046
Ighv2-6 12 113716672 to 113716962 290 - gene segment immunoglobulin heavy variable 2-6
Gm37976 12 113718318 to 113719231 913 - pseudogenic gene segment predicted gene, 37976
Gm37418 12 113724761 to 113725196 435 - pseudogenic gene segment predicted gene, 37418
Ighv5-9-1 12 113736113 to 113736406 293 - gene segment immunoglobulin heavy variable 5-9-1
Tssr118047 12 113736641 to 113736659 18 - TSS region transcription start site region 118047
Gm38203 12 113745520 to 113745889 369 - pseudogenic gene segment predicted gene, 38203
Ighv5-12-4 12 113762251 to 113762544 293 - gene segment immunoglobulin heavy variable 5-12-4
Gm38205 12 113767840 to 113768220 380 - pseudogenic gene segment predicted gene, 38205
Ighv2-9-1 12 113769857 to 113770142 285 - gene segment immunoglobulin heavy variable 2-9-1
Gm37722 12 113772004 to 113772334 330 - pseudogenic gene segment predicted gene, 37722
Ighv5-13 12 113794063 to 113794358 295 - pseudogenic gene segment immunoglobulin heavy variable V5-13
Ighv2-6-8 12 113796138 to 113796430 292 - gene segment immunoglobulin heavy variable 2-6-8
Gm7003 12 113803004 to 113803206 202 - pseudogenic gene segment predicted gene 7003
Ighv2-7 12 113807314 to 113807747 433 - gene segment immunoglobulin heavy variable 2-7
Tssr118048 12 113807773 to 113807779 6 - TSS region transcription start site region 118048
Rpl26-ps3 12 113825226 to 113825660 434 + pseudogene ribosomal protein L26, pseudogene 3
Ighv5-15 12 113826648 to 113826941 293 - gene segment immunoglobulin heavy variable 5-15
Tssr118049 12 113827187 to 113827204 17 - TSS region transcription start site region 118049
Ighv5-16 12 113838528 to 113838821 293 - gene segment immunoglobulin heavy variable 5-16
Tssr118050 12 113839029 to 113839045 16 - TSS region transcription start site region 118050
Ighv5-17 12 113859149 to 113859442 293 - gene segment immunoglobulin heavy variable 5-17
Tssr118051 12 113859682 to 113859700 18 - TSS region transcription start site region 118051
Ighv5-18 12 113875796 to 113876239 443 - pseudogenic gene segment immunoglobulin heavy variable V5-18
Ighv2-8 12 113877361 to 113877659 298 - pseudogenic gene segment immunoglobulin heavy variable V2-8
Ighv2-9 12 113879097 to 113879388 291 - gene segment immunoglobulin heavy variable 2-9
Tssr118052 12 113879554 to 113879558 4 - TSS region transcription start site region 118052
Ighv5-19 12 113884761 to 113885057 296 - pseudogenic gene segment immunoglobulin heavy variable V5-19
Ighv7-1 12 113896408 to 113896946 538 - pseudogenic gene segment immunoglobulin heavy variable 7-1
D12Nds2 12 113896717 to 113896905 188 DNA segment DNA segment, Chr 12, Nuffield Department of Surgery 2
Im6 12 113896717 to 113896905 188 QTL immunoregulatory 6
Sluc12 12 113896717 to 113896905 188 QTL susceptibility to lung cancer 12
Tssr115506 12 113896919 to 113896922 3 + TSS region transcription start site region 115506
Tssr118053 12 113897004 to 113897010 6 - TSS region transcription start site region 118053
Ighv7-2 12 113912025 to 113912483 458 - gene segment immunoglobulin heavy variable 7-2
Ighv14-1 12 113931953 to 113932246 293 - gene segment immunoglobulin heavy variable 14-1
Tssr118054 12 113932424 to 113932432 8 - TSS region transcription start site region 118054
Ighv4-1 12 113948284 to 113948577 293 - gene segment immunoglobulin heavy variable 4-1
Ighv3-1 12 113964390 to 113964683 293 - gene segment immunoglobulin heavy variable 3-1
Tssr118055 12 113964865 to 113964874 9 - TSS region transcription start site region 118055
Gm37961 12 113968554 to 113968852 298 - pseudogenic gene segment predicted gene, 37961
Ighv11-1 12 113981879 to 113982174 295 - gene segment immunoglobulin heavy variable 11-1
Ighv14-2 12 113994469 to 113994898 429 - gene segment immunoglobulin heavy variable 14-2
Tssr118056 12 113994940 to 113994949 9 - TSS region transcription start site region 118056
Ighv4-2 12 114013144 to 114013439 295 - pseudogenic gene segment immunoglobulin heavy variable V4-2
Ighv3-2 12 114033803 to 114034097 294 - pseudogenic gene segment immunoglobulin heavy variable 3-2
Ighv11-2 12 114048241 to 114048704 463 - gene segment immunoglobulin heavy variable V11-2
Tssr118057 12 114048736 to 114048746 10 - TSS region transcription start site region 118057
Tssr118058 12 114048748 to 114048769 21 - TSS region transcription start site region 118058
Tssr3974 12 114048779 to 114048780 1 - TSS region transcription start site region 3974
Ighv14-3 12 114059845 to 114060273 428 - gene segment immunoglobulin heavy variable V14-3
Tssr118059 12 114060315 to 114060322 7 - TSS region transcription start site region 118059
Ighv16-1 12 114068828 to 114069126 298 - gene segment immunoglobulin heavy variable 16-1
Ighv6-2 12 114089387 to 114089681 294 - pseudogenic gene segment immunoglobulin heavy variable V6-2
Ighv9-1 12 114093928 to 114094221 293 - gene segment immunoglobulin heavy variable 9-1
Ighv12-1 12 114107259 to 114107563 304 - pseudogenic gene segment immunoglobulin heavy variable V12-1
Ighv9-2 12 114109001 to 114109430 429 - gene segment immunoglobulin heavy variable V9-2
Tssr118060 12 114109460 to 114109493 33 - TSS region transcription start site region 118060
Ighv12-2 12 114127533 to 114127984 451 - pseudogenic gene segment immunoglobulin heavy variable V12-2
Tssr118061 12 114128016 to 114128045 29 - TSS region transcription start site region 118061
Ighv9-3 12 114140692 to 114141122 430 - gene segment immunoglobulin heavy variable V9-3
Tssr118062 12 114141122 to 114141133 11 - TSS region transcription start site region 118062
Ighv7-3 12 114153180 to 114153644 464 - pseudogenic gene segment immunoglobulin heavy variable 7-3
Tssr118063 12 114153714 to 114153724 10 - TSS region transcription start site region 118063
Ighv15-1 12 114158040 to 114158315 275 - pseudogenic gene segment immunoglobulin heavy variable V15-1
Ighv14-4 12 114176438 to 114176867 429 - gene segment immunoglobulin heavy variable 14-4
Tssr118064 12 114176909 to 114176918 9 - TSS region transcription start site region 118064
Gm37838 12 114188689 to 114189000 311 - pseudogene predicted gene, 37838
Ighv3-3 12 114196439 to 114196875 436 - gene segment immunoglobulin heavy variable V3-3
Tssr118065 12 114196924 to 114196937 13 - TSS region transcription start site region 118065
Ighv7-4 12 114222788 to 114223254 466 - gene segment immunoglobulin heavy variable 7-4
Tssr118066 12 114223325 to 114223334 9 - TSS region transcription start site region 118066
Ighv3-4 12 114253617 to 114253915 298 - gene segment immunoglobulin heavy variable V3-4
Tssr118067 12 114254097 to 114254104 7 - TSS region transcription start site region 118067
Ighv3-5 12 114262652 to 114262950 298 - gene segment immunoglobulin heavy variable 3-5
Tssr118068 12 114263138 to 114263145 7 - TSS region transcription start site region 118068
Gm18551 12 114265607 to 114266248 641 - pseudogene predicted gene, 18551
Ighv13-1 12 114267613 to 114267906 293 - gene segment immunoglobulin heavy variable 13-1
Ighv3-6 12 114288152 to 114288447 295 - gene segment immunoglobulin heavy variable 3-6
Tssr118069 12 114288626 to 114288643 17 - TSS region transcription start site region 118069
Ighv9-4 12 114299961 to 114300254 293 - gene segment immunoglobulin heavy variable 9-4
Tssr118070 12 114300418 to 114300453 35 - TSS region transcription start site region 118070
Ighv3-7 12 114314186 to 114314479 293 - pseudogenic gene segment immunoglobulin heavy variable V3-7
Ighv5-21 12 114320030 to 114320324 294 - pseudogenic gene segment immunoglobulin heavy variable V5-21
Ighv3-8 12 114322376 to 114322666 290 - gene segment immunoglobulin heavy variable V3-8
Tssr118071 12 114322844 to 114322860 16 - TSS region transcription start site region 118071
Tssr115507 12 114323025 to 114323037 12 + TSS region transcription start site region 115507
Ighv8-1 12 114332796 to 114333086 290 - pseudogenic gene segment immunoglobulin heavy variable V8-1
Ighv1-1 12 114351705 to 114351995 290 - pseudogenic gene segment immunoglobulin heavy variable V1-1
Ighv13-2 12 114357761 to 114358060 299 - gene segment immunoglobulin heavy variable 13-2
Tssr118072 12 114358256 to 114358270 14 - TSS region transcription start site region 118072
Tssr118073 12 114358280 to 114358292 12 - TSS region transcription start site region 118073
Ighv12-3 12 114366526 to 114366819 293 - gene segment immunoglobulin heavy variable V12-3
Tssr118074 12 114367007 to 114367012 5 - TSS region transcription start site region 118074
Cpgi5211 12 114378728 to 114379344 616 CpG island CpG island 5211
Ighv6-3 12 114391712 to 114392010 298 - gene segment immunoglobulin heavy variable 6-3
Tssr118075 12 114392214 to 114392226 12 - TSS region transcription start site region 118075
Tssr118076 12 114392231 to 114392247 16 - TSS region transcription start site region 118076
Ighv6-4 12 114406474 to 114406773 299 - gene segment immunoglobulin heavy variable V6-4
Tssr118077 12 114407025 to 114407033 8 - TSS region transcription start site region 118077
Ighv6-5 12 114416596 to 114416895 299 - gene segment immunoglobulin heavy variable V6-5
Ighv6-6 12 114434788 to 114435087 299 - gene segment immunoglobulin heavy variable 6-6
Tssr118078 12 114435304 to 114435319 15 - TSS region transcription start site region 118078
Ighv6-7 12 114455626 to 114455925 299 - gene segment immunoglobulin heavy variable V6-7
Tssr118079 12 114456132 to 114456157 25 - TSS region transcription start site region 118079
Ighv8-2 12 114462290 to 114462589 299 - gene segment immunoglobulin heavy variable V8-2
Tssr118080 12 114462737 to 114462745 8 - TSS region transcription start site region 118080
Ighv1-2 12 114469075 to 114469371 296 - pseudogenic gene segment immunoglobulin heavy variable 1-2
Mir7094-1 12 114469407 to 114469466 59 - miRNA gene microRNA 7094-1
Tssr118081 12 114469560 to 114469588 28 - TSS region transcription start site region 118081
Ighv10-1 12 114479007 to 114479451 444 - gene segment immunoglobulin heavy variable 10-1
Tssr3975 12 114479491 to 114479496 5 - TSS region transcription start site region 3975
Tssr118082 12 114479506 to 114479521 15 - TSS region transcription start site region 118082
Ighv1-3 12 114481615 to 114481916 301 - pseudogenic gene segment immunoglobulin heavy variable V1-3
Ighv1-4 12 114487136 to 114487429 293 - gene segment immunoglobulin heavy variable 1-4
Tssr118083 12 114487615 to 114487622 7 - TSS region transcription start site region 118083
Ighv10-2 12 114496003 to 114496300 297 - pseudogenic gene segment immunoglobulin heavy variable V10-2
Ighv1-5 12 114513330 to 114513623 293 - gene segment immunoglobulin heavy variable V1-5
Mir7094-2 12 114513635 to 114513694 59 - miRNA gene microRNA 7094-2
Tssr118084 12 114513785 to 114513798 13 - TSS region transcription start site region 118084
Tssr118085 12 114513807 to 114513822 15 - TSS region transcription start site region 118085
D12Mit208 12 114514193 to 114514326 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 208