Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:113337945-117958245

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606 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plyid 12 109217459 to 115921502 6704043 QTL Polymeric IgA dominance
Scrd2 12 109969663 to 113361762 3392099 heritable phenotypic marker smallest common region of deletion 2
Igh 12 113258768 to 116009954 2751186 - complex/cluster/region immunoglobulin heavy chain complex
Ighg3 12 113357442 to 113361232 3790 - gene segment Immunoglobulin heavy constant gamma 3
Tssr115498 12 113359910 to 113359956 46 + TSS region transcription start site region 115498
Tssr117958 12 113360371 to 113360398 27 - TSS region transcription start site region 117958
Tssr3970 12 113360554 to 113360574 20 - TSS region transcription start site region 3970
D12Mit20 12 113361566 to 113361762 196 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 20
Igh-8 12 113365795 to 113367226 1431 gene segment immunoglobulin heavy chain 8 (heavy chain of IgG3)
Tssr117959 12 113366503 to 113366538 35 - TSS region transcription start site region 117959
Gm17421 12 113369522 to 113372201 2679 + pseudogene predicted gene, 17421
Gm9134 12 113381011 to 113381561 550 - pseudogene predicted gene 9134
Cpgi5210 12 113381449 to 113381734 285 CpG island CpG island 5210
Gm9136 12 113396783 to 113397225 442 - pseudogene predicted gene 9136
Gm5190 12 113397229 to 113397585 356 + pseudogene predicted gene 5190
Tssr117960 12 113407307 to 113407318 11 - TSS region transcription start site region 117960
Ighd 12 113407535 to 113416324 8789 - gene segment immunoglobulin heavy constant delta
Tssr117961 12 113414396 to 113414408 12 - TSS region transcription start site region 117961
Tssr117962 12 113414583 to 113414594 11 - TSS region transcription start site region 117962
Tssr117963 12 113415553 to 113415566 13 - TSS region transcription start site region 117963
Tssr117964 12 113416305 to 113416314 9 - TSS region transcription start site region 117964
Ighm 12 113418826 to 113422730 3904 - gene segment immunoglobulin heavy constant mu
D12Mit8 12 113419742 to 113419913 171 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 8
Egq10 12 113419913 to 80909934 -32509979 QTL early growth QTL 10
W6q10 12 113419913 to 80909934 -32509979 QTL weight 6 weeks QTL 10
Lvrq10 12 113419913 to 80909934 -32509979 QTL liver weight QTL 10
Tailaq1 12 113419913 to 80909934 -32509979 QTL tail length adjusted QTL 1
Tssr117965 12 113419994 to 113420006 12 - TSS region transcription start site region 117965
Tssr117966 12 113421115 to 113421132 17 - TSS region transcription start site region 117966
Tssr117967 12 113421159 to 113421174 15 - TSS region transcription start site region 117967
Tssr117968 12 113421188 to 113421199 11 - TSS region transcription start site region 117968
Tssr117969 12 113421422 to 113421441 19 - TSS region transcription start site region 117969
Tssr117970 12 113421469 to 113421492 23 - TSS region transcription start site region 117970
Tssr115499 12 113421605 to 113421617 12 + TSS region transcription start site region 115499
Tssr117971 12 113421632 to 113421692 60 - TSS region transcription start site region 117971
Tssr115500 12 113421641 to 113421661 20 + TSS region transcription start site region 115500
Tssr117972 12 113421998 to 113422012 14 - TSS region transcription start site region 117972
Tssr117973 12 113422034 to 113422043 9 - TSS region transcription start site region 117973
Tssr115501 12 113422040 to 113422075 35 + TSS region transcription start site region 115501
Tssr117974 12 113422067 to 113422118 51 - TSS region transcription start site region 117974
Tssr115502 12 113422082 to 113422101 19 + TSS region transcription start site region 115502
Tssr117975 12 113422142 to 113422171 29 - TSS region transcription start site region 117975
Tssr117976 12 113422201 to 113422229 28 - TSS region transcription start site region 117976
Tssr117977 12 113422235 to 113422271 36 - TSS region transcription start site region 117977
Tssr117978 12 113422386 to 113422414 28 - TSS region transcription start site region 117978
Tssr117979 12 113422511 to 113422518 7 - TSS region transcription start site region 117979
Tssr115503 12 113422529 to 113422542 13 + TSS region transcription start site region 115503
Tssr117980 12 113422532 to 113422548 16 - TSS region transcription start site region 117980
Tssr117981 12 113422631 to 113422641 10 - TSS region transcription start site region 117981
Tssr117982 12 113422652 to 113422661 9 - TSS region transcription start site region 117982
Tssr117983 12 113422692 to 113422714 22 - TSS region transcription start site region 117983
Tssr117984 12 113422735 to 113422744 9 - TSS region transcription start site region 117984
Gm25747 12 113424645 to 113424722 77 - miRNA gene predicted gene, 25747
Gm24022 12 113424724 to 113424783 59 - miRNA gene predicted gene, 24022
Gm22175 12 113425150 to 113425227 77 - miRNA gene predicted gene, 22175
Tssr117985 12 113425361 to 113425390 29 - TSS region transcription start site region 117985
Tssr117986 12 113425420 to 113425434 14 - TSS region transcription start site region 117986
Tssr117987 12 113425476 to 113425498 22 - TSS region transcription start site region 117987
Tssr117988 12 113425679 to 113425694 15 - TSS region transcription start site region 117988
Tssr117989 12 113425708 to 113425732 24 - TSS region transcription start site region 117989
Tssr117990 12 113425765 to 113425776 11 - TSS region transcription start site region 117990
Tssr117991 12 113425792 to 113425838 46 - TSS region transcription start site region 117991
Tssr117992 12 113425924 to 113425969 45 - TSS region transcription start site region 117992
Tssr117993 12 113425992 to 113426030 38 - TSS region transcription start site region 117993
Tssr117994 12 113426691 to 113426701 10 - TSS region transcription start site region 117994
Tssr117995 12 113426767 to 113426780 13 - TSS region transcription start site region 117995
Tssr117996 12 113426783 to 113426794 11 - TSS region transcription start site region 117996
Tssr117997 12 113426823 to 113426882 59 - TSS region transcription start site region 117997
Tssr117998 12 113426890 to 113426906 16 - TSS region transcription start site region 117998
Tssr117999 12 113426916 to 113426947 31 - TSS region transcription start site region 117999
Tssr118000 12 113426960 to 113426971 11 - TSS region transcription start site region 118000
Tssr118001 12 113427285 to 113427294 9 - TSS region transcription start site region 118001
Tssr118002 12 113427317 to 113427330 13 - TSS region transcription start site region 118002
Tssr118003 12 113427332 to 113427396 64 - TSS region transcription start site region 118003
Tssr118004 12 113427407 to 113427422 15 - TSS region transcription start site region 118004
Tssr3971 12 113427466 to 113427473 7 - TSS region transcription start site region 3971
Tssr3972 12 113427510 to 113427513 3 - TSS region transcription start site region 3972
Tssr3973 12 113427523 to 113427531 8 - TSS region transcription start site region 3973
Ighj4 12 113428514 to 113428567 53 - gene segment immunoglobulin heavy joining 4
Tssr118005 12 113428534 to 113428547 13 - TSS region transcription start site region 118005
Tssr118006 12 113428555 to 113428578 23 - TSS region transcription start site region 118006
Tssr118007 12 113428608 to 113428624 16 - TSS region transcription start site region 118007
Tssr118008 12 113428639 to 113428651 12 - TSS region transcription start site region 118008
Tssr118009 12 113428652 to 113428662 10 - TSS region transcription start site region 118009
Tssr118010 12 113428789 to 113428800 11 - TSS region transcription start site region 118010
Tssr118011 12 113428888 to 113428898 10 - TSS region transcription start site region 118011
Ighj3 12 113429085 to 113429132 47 - gene segment immunoglobulin heavy joining 3
Tssr118012 12 113429108 to 113429133 25 - TSS region transcription start site region 118012
Tssr118013 12 113429136 to 113429148 12 - TSS region transcription start site region 118013
Tssr118014 12 113429242 to 113429252 10 - TSS region transcription start site region 118014
Tssr118015 12 113429308 to 113429348 40 - TSS region transcription start site region 118015
Ighj2 12 113429468 to 113429515 47 - gene segment immunoglobulin heavy joining 2
Tssr118016 12 113429490 to 113429502 12 - TSS region transcription start site region 118016
Ighj1 12 113429781 to 113429833 52 - gene segment immunoglobulin heavy joining 1
Tssr118017 12 113429820 to 113429842 22 - TSS region transcription start site region 118017
Tssr115504 12 113430227 to 113430240 13 + TSS region transcription start site region 115504
Tssr118018 12 113430376 to 113430385 9 - TSS region transcription start site region 118018
Tssr118019 12 113430393 to 113430441 48 - TSS region transcription start site region 118019
Tssr118020 12 113430449 to 113430486 37 - TSS region transcription start site region 118020
Ighd4-1 12 113430528 to 113430538 10 - gene segment immunoglobulin heavy diversity 4-1
Tssr118021 12 113430589 to 113430603 14 - TSS region transcription start site region 118021
Tssr118022 12 113430621 to 113430632 11 - TSS region transcription start site region 118022
Tssr118023 12 113430786 to 113430795 9 - TSS region transcription start site region 118023
Tssr115505 12 113446406 to 113446410 4 + TSS region transcription start site region 115505
Ighd3-2 12 113448214 to 113448229 15 - gene segment immunoglobulin heavy diversity 3-2
Ighd5-6 12 113449588 to 113449597 9 - pseudogenic gene segment immunoglobulin heavy diversity 5-6
Ighd2-8 12 113450851 to 113450867 16 - gene segment immunoglobulin heavy diversity 2-8
Ighd5-5 12 113454942 to 113454951 9 - pseudogenic gene segment immunoglobulin heavy diversity 5-5
Ighd2-7 12 113456720 to 113456736 16 - gene segment immunoglobulin heavy diversity 2-7
Ighd5-8 12 113459864 to 113459892 28 - pseudogenic gene segment immunoglobulin heavy diversity 5-8
Ighd5-4 12 113460101 to 113460110 9 - pseudogenic gene segment immunoglobulin heavy diversity 5-4
Ighd2-6 12 113461369 to 113461385 16 - gene segment immunoglobulin heavy diversity 2-6
Ighd5-7 12 113464524 to 113464552 28 - pseudogenic gene segment immunoglobulin heavy diversity 5-7
Ighd5-3 12 113464761 to 113464770 9 - pseudogenic gene segment immunoglobulin heavy diversity 5-3
Ighd2-5 12 113466027 to 113466043 16 - gene segment immunoglobulin heavy diversity 2-5
Gm37327 12 113469189 to 113469217 28 - gene segment predicted gene, 37327
Ighd5-2 12 113469426 to 113469435 9 - pseudogenic gene segment immunoglobulin heavy diversity 5-2
Ighd2-4 12 113470694 to 113470710 16 - gene segment immunoglobulin heavy diversity 2-4
Ighd6-2 12 113474875 to 113474903 28 - pseudogenic gene segment immunoglobulin heavy diversity 6-2
Gm37227 12 113475112 to 113475121 9 - pseudogenic gene segment predicted gene, 37227
Ighd2-3 12 113475400 to 113475416 16 - gene segment immunoglobulin heavy diversity 2-3
Ighd6-1 12 113480143 to 113480171 28 - pseudogenic gene segment immunoglobulin heavy diversity 6-1
Ighd1-1 12 113482170 to 113482192 22 - gene segment immunoglobulin heavy diversity 1-1
Tssr118024 12 113482249 to 113482264 15 - TSS region transcription start site region 118024
Tssr118025 12 113482287 to 113482311 24 - TSS region transcription start site region 118025
Tssr118026 12 113482316 to 113482325 9 - TSS region transcription start site region 118026
Tssr118027 12 113482326 to 113482340 14 - TSS region transcription start site region 118027
Tssr118028 12 113482346 to 113482349 3 - TSS region transcription start site region 118028
Tssr118029 12 113482353 to 113482359 6 - TSS region transcription start site region 118029
Tssr118030 12 113482371 to 113482378 7 - TSS region transcription start site region 118030
Tssr118031 12 113482400 to 113482405 5 - TSS region transcription start site region 118031
Tssr118032 12 113482409 to 113482416 7 - TSS region transcription start site region 118032
Tssr118033 12 113482421 to 113482432 11 - TSS region transcription start site region 118033
Tssr118034 12 113482445 to 113482470 25 - TSS region transcription start site region 118034
Tssr118035 12 113482473 to 113482483 10 - TSS region transcription start site region 118035
Tssr118036 12 113482489 to 113482507 18 - TSS region transcription start site region 118036
Tssr118037 12 113482556 to 113482571 15 - TSS region transcription start site region 118037
Tssr118038 12 113482583 to 113482593 10 - TSS region transcription start site region 118038
Tssr118039 12 113482627 to 113482637 10 - TSS region transcription start site region 118039
Adam6b 12 113489565 to 113491835 2270 + protein coding gene a disintegrin and metallopeptidase domain 6B
Ighd3-1 12 113525313 to 113525329 16 - gene segment immunoglobulin heavy diversity 3-1
D12Mit263 12 113526429 to 113526541 112 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 263
Ighd5-1 12 113526800 to 113526809 9 - pseudogenic gene segment immunoglobulin heavy diversity 5-1
Gm16968 12 113528032 to 113528054 22 - gene segment predicted gene, 16968
Adam6a 12 113543908 to 113546414 2506 + protein coding gene a disintegrin and metallopeptidase domain 6A
Ighv5-1 12 113572929 to 113573222 293 - pseudogenic gene segment immunoglobulin heavy variable V5-1
Ighv2-1 12 113574247 to 113574540 293 - pseudogenic gene segment immunoglobulin heavy variable 2-1
Ighv5-2 12 113578504 to 113578990 486 - gene segment immunoglobulin heavy variable 5-2
Tssr118040 12 113579056 to 113579073 17 - TSS region transcription start site region 118040
Ighv2-2 12 113588267 to 113588700 433 - gene segment immunoglobulin heavy variable 2-2
Tssr118041 12 113588721 to 113588734 13 - TSS region transcription start site region 118041
Ighv5-3 12 113589967 to 113590243 276 - pseudogenic gene segment immunoglobulin heavy variable V5-3
Ighv5-4 12 113597448 to 113597741 293 - gene segment immunoglobulin heavy variable 5-4
Tssr118042 12 113597974 to 113597983 9 - TSS region transcription start site region 118042
Ighv6-1 12 113603460 to 113603928 468 - pseudogenic gene segment immunoglobulin heavy variable V6-1
Ighv2-3 12 113611184 to 113611476 292 - gene segment immunoglobulin heavy variable 2-3
Tssr118043 12 113611643 to 113611648 5 - TSS region transcription start site region 118043
Ighv5-5 12 113612989 to 113613442 453 - pseudogenic gene segment immunoglobulin heavy variable V5-5
Ighv5-6 12 113625508 to 113625801 293 - gene segment immunoglobulin heavy variable 5-6
Tssr118044 12 113626023 to 113626037 14 - TSS region transcription start site region 118044
Gm9517 12 113629994 to 113630867 873 - pseudogene predicted gene 9517
Ighv5-7 12 113634686 to 113634981 295 - pseudogenic gene segment immunoglobulin heavy variable V5-7
Ighv2-4 12 113653291 to 113653583 292 - gene segment immunoglobulin heavy variable V2-4
Ighv5-8 12 113654967 to 113655245 278 - pseudogenic gene segment immunoglobulin heavy variable V5-8
Ighv5-9 12 113661771 to 113662228 457 - gene segment immunoglobulin heavy variable 5-9
Tssr118045 12 113662293 to 113662309 16 - TSS region transcription start site region 118045
Ighv5-10 12 113669673 to 113669968 295 - pseudogenic gene segment immunoglobulin heavy variable 5-10
Gm37187 12 113682466 to 113682891 425 - pseudogenic gene segment predicted gene, 37187
Ighv2-5 12 113685482 to 113685774 292 - gene segment immunoglobulin heavy variable 2-5
Ighv5-11 12 113687229 to 113687505 276 - pseudogenic gene segment immunoglobulin heavy variable V5-11
Ighv5-12 12 113702126 to 113702419 293 - gene segment immunoglobulin heavy variable 5-12
Tssr118046 12 113702651 to 113702662 11 - TSS region transcription start site region 118046
Ighv2-6 12 113716672 to 113716962 290 - gene segment immunoglobulin heavy variable 2-6
Gm37976 12 113718318 to 113719231 913 - pseudogenic gene segment predicted gene, 37976
Gm37418 12 113724761 to 113725196 435 - pseudogenic gene segment predicted gene, 37418
Ighv5-9-1 12 113736113 to 113736406 293 - gene segment immunoglobulin heavy variable 5-9-1
Tssr118047 12 113736641 to 113736659 18 - TSS region transcription start site region 118047
Gm38203 12 113745520 to 113745889 369 - pseudogenic gene segment predicted gene, 38203
Ighv5-12-4 12 113762251 to 113762544 293 - gene segment immunoglobulin heavy variable 5-12-4
Gm38205 12 113767840 to 113768220 380 - pseudogenic gene segment predicted gene, 38205
Ighv2-9-1 12 113769857 to 113770142 285 - gene segment immunoglobulin heavy variable 2-9-1
Gm37722 12 113772004 to 113772334 330 - pseudogenic gene segment predicted gene, 37722
Ighv5-13 12 113794063 to 113794358 295 - pseudogenic gene segment immunoglobulin heavy variable V5-13
Ighv2-6-8 12 113796138 to 113796430 292 - gene segment immunoglobulin heavy variable 2-6-8
Gm7003 12 113803004 to 113803206 202 - pseudogenic gene segment predicted gene 7003
Ighv2-7 12 113807314 to 113807747 433 - gene segment immunoglobulin heavy variable 2-7
Tssr118048 12 113807773 to 113807779 6 - TSS region transcription start site region 118048
Rpl26-ps3 12 113825226 to 113825660 434 + pseudogene ribosomal protein L26, pseudogene 3
Ighv5-15 12 113826648 to 113826941 293 - gene segment immunoglobulin heavy variable 5-15
Tssr118049 12 113827187 to 113827204 17 - TSS region transcription start site region 118049
Ighv5-16 12 113838528 to 113838821 293 - gene segment immunoglobulin heavy variable 5-16
Tssr118050 12 113839029 to 113839045 16 - TSS region transcription start site region 118050
Ighv5-17 12 113859149 to 113859442 293 - gene segment immunoglobulin heavy variable 5-17
Tssr118051 12 113859682 to 113859700 18 - TSS region transcription start site region 118051
Ighv5-18 12 113875796 to 113876239 443 - pseudogenic gene segment immunoglobulin heavy variable V5-18
Ighv2-8 12 113877361 to 113877659 298 - pseudogenic gene segment immunoglobulin heavy variable V2-8
Ighv2-9 12 113879097 to 113879388 291 - gene segment immunoglobulin heavy variable 2-9
Tssr118052 12 113879554 to 113879558 4 - TSS region transcription start site region 118052
Ighv5-19 12 113884761 to 113885057 296 - pseudogenic gene segment immunoglobulin heavy variable V5-19
Ighv7-1 12 113896408 to 113896946 538 - pseudogenic gene segment immunoglobulin heavy variable 7-1