Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:11333045-12713658

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vsnl1 12 11325242 to 11436613 111371 - protein coding gene visinin-like 1
Tssr115744 12 11386872 to 11386888 16 - TSS region transcription start site region 115744
Tssr115745 12 11435638 to 11435653 15 - TSS region transcription start site region 115745
Tssr3791 12 11436475 to 11436487 12 - TSS region transcription start site region 3791
Cpgi4418 12 11436489 to 11436772 283 CpG island CpG island 4418
Tssr115746 12 11436498 to 11436509 11 - TSS region transcription start site region 115746
Tssr3792 12 11436518 to 11436540 22 - TSS region transcription start site region 3792
Tssr115747 12 11436550 to 11436603 53 - TSS region transcription start site region 115747
Tssr115748 12 11436607 to 11436618 11 - TSS region transcription start site region 115748
Tssr3793 12 11436711 to 11436720 9 - TSS region transcription start site region 3793
Cpgi4419 12 11438020 to 11438277 257 CpG island CpG island 4419
Tssr112802 12 11438191 to 11438238 47 + TSS region transcription start site region 112802
4930511A02Rik 12 11438233 to 11444812 6579 + lincRNA gene RIKEN cDNA 4930511A02 gene
Cpgi4420 12 11455744 to 11456419 675 CpG island CpG island 4420
Tssr112803 12 11456052 to 11456058 6 + TSS region transcription start site region 112803
Rad51ap2 12 11456079 to 11462928 6849 + protein coding gene RAD51 associated protein 2
D12Mit168 12 11465395 to 11465581 186 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 168
Gm47807 12 11499295 to 11499892 597 + pseudogene predicted gene, 47807
Gm47808 12 11507226 to 11512390 5164 - unclassified non-coding RNA gene predicted gene, 47808
Tcq14 12 11610000 to 97210000 85600000 QTL total cholesterol QTL 14
Gm4803 12 11665771 to 11667049 1278 - pseudogene predicted gene 4803
Gm23781 12 11688697 to 11689004 307 - unclassified non-coding RNA gene predicted gene, 23781
Gm47821 12 11698868 to 11700546 1678 - unclassified gene predicted gene, 47821
Gm47822 12 11701306 to 11701678 372 - unclassified gene predicted gene, 47822
Gm6867 12 11760447 to 11760871 424 - pseudogene predicted gene 6867
Gm47833 12 11781535 to 11792951 11416 + lincRNA gene predicted gene, 47833
Tssr112804 12 11802132 to 11802133 1 + TSS region transcription start site region 112804
Gm34237 12 11826706 to 11897710 71004 + lincRNA gene predicted gene, 34237
Cpgi4421 12 11881518 to 11881823 305 CpG island CpG island 4421
Tubb2a-ps2 12 11882196 to 11882899 703 - pseudogene tubulin, beta 2a, pseudogene 2
Tssr115749 12 11882392 to 11882417 25 - TSS region transcription start site region 115749
Tssr112805 12 11882466 to 11882487 21 + TSS region transcription start site region 112805
Gm25610 12 12013623 to 12013751 128 + snoRNA gene predicted gene, 25610
Tssr112806 12 12022997 to 12023001 4 + TSS region transcription start site region 112806
Gm4294 12 12023045 to 12023658 613 + pseudogene predicted gene 4294
Gm46334 12 12031934 to 12039401 7467 + lncRNA gene predicted gene, 46334
Gm18240 12 12097732 to 12123271 25539 - pseudogene predicted gene, 18240
Gm26171 12 12106737 to 12106867 130 + rRNA gene predicted gene, 26171
Gm34348 12 12145208 to 12147695 2487 - lncRNA gene predicted gene, 34348
Tssr3794 12 12170538 to 12170540 2 - TSS region transcription start site region 3794
Tssr115750 12 12177311 to 12177331 20 - TSS region transcription start site region 115750
Gm40838 12 12237189 to 12254299 17110 + lncRNA gene predicted gene, 40838
Cpgi4422 12 12261806 to 12262771 965 CpG island CpG island 4422
Fam49a 12 12262133 to 12376363 114230 + protein coding gene family with sequence similarity 49, member A
Tssr112807 12 12262139 to 12262157 18 + TSS region transcription start site region 112807
Tssr112808 12 12262164 to 12262191 27 + TSS region transcription start site region 112808
Gm34407 12 12284555 to 12289464 4909 - lncRNA gene predicted gene, 34407
9530022J15Rik 12 12293444 to 12294051 607 unclassified gene RIKEN cDNA 9530022J15 gene
D12Mit56 12 12302608 to 12302754 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 56
Cpgi4423 12 12324380 to 12324714 334 CpG island CpG island 4423
Tssr112809 12 12342174 to 12342178 4 + TSS region transcription start site region 112809
Tssr112810 12 12345312 to 12345320 8 + TSS region transcription start site region 112810
4921511I17Rik 12 12351522 to 12392475 40953 - antisense lncRNA gene RIKEN cDNA 4921511I17 gene
Cpgi4424 12 12420933 to 12421312 379 CpG island CpG island 4424
Gm34489 12 12421041 to 12524489 103448 + lncRNA gene predicted gene, 34489
Tssr115751 12 12491873 to 12491878 5 - TSS region transcription start site region 115751
Tssr115752 12 12492013 to 12492022 9 - TSS region transcription start site region 115752
Tssr115753 12 12492253 to 12492260 7 - TSS region transcription start site region 115753
Tssr115754 12 12492762 to 12492772 10 - TSS region transcription start site region 115754
Tssr115755 12 12492843 to 12492881 38 - TSS region transcription start site region 115755
Tssr115756 12 12492906 to 12492913 7 - TSS region transcription start site region 115756
Tssr115757 12 12493102 to 12493117 15 - TSS region transcription start site region 115757
Tssr115758 12 12493119 to 12493128 9 - TSS region transcription start site region 115758
Tssr115759 12 12546624 to 12546635 11 - TSS region transcription start site region 115759
Tssr112811 12 12547912 to 12547944 32 + TSS region transcription start site region 112811
Tssr112812 12 12580917 to 12580951 34 + TSS region transcription start site region 112812
Gm34637 12 12667732 to 12669917 2185 - lncRNA gene predicted gene, 34637
Gm27952 12 12682514 to 12682618 104 - rRNA gene predicted gene, 27952
Gm34696 12 12688361 to 12704861 16500 - lncRNA gene predicted gene, 34696
Gm25538 12 12700039 to 12700145 106 + snRNA gene predicted gene, 25538
Gm40269 12 12708261 to 12711956 3695 - lncRNA gene predicted gene, 40269