Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:113210712-113422877

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scrd2 12 109969663 to 113361762 3392099 heritable phenotypic marker smallest common region of deletion 2
Gm25622 12 113214149 to 113214252 103 + snRNA gene predicted gene, 25622
Cpgi5209 12 113214376 to 113214588 212 CpG island CpG island 5209
Tssr117939 12 113215020 to 113215054 34 - TSS region transcription start site region 117939
Igha 12 113256204 to 113260236 4032 - gene segment immunoglobulin heavy constant alpha
Tssr3968 12 113258740 to 113258788 48 - TSS region transcription start site region 3968
Igh 12 113258768 to 116009954 2751186 - complex/cluster/region immunoglobulin heavy chain complex
Tssr3969 12 113259120 to 113259141 21 - TSS region transcription start site region 3969
Tssr117940 12 113259540 to 113259549 9 - TSS region transcription start site region 117940
Tssr115495 12 113259627 to 113259658 31 + TSS region transcription start site region 115495
Tssr117941 12 113259670 to 113259706 36 - TSS region transcription start site region 117941
Tssr117942 12 113259974 to 113259982 8 - TSS region transcription start site region 117942
Tssr117943 12 113260028 to 113260039 11 - TSS region transcription start site region 117943
Tssr117944 12 113260046 to 113260062 16 - TSS region transcription start site region 117944
Tssr115496 12 113260160 to 113260171 11 + TSS region transcription start site region 115496
Tssr115497 12 113260176 to 113260197 21 + TSS region transcription start site region 115497
Tssr117945 12 113260217 to 113260232 15 - TSS region transcription start site region 117945
Igh-7 12 113264521 to 113277715 13194 gene segment immunoglobulin heavy chain 7 (heavy chain of IgE)
Igh-Ia 12 113264670 to 113265262 592 gene segment immunoglobulin heavy chain Ia
Tssr117946 12 113265070 to 113265082 12 - TSS region transcription start site region 117946
Tssr117947 12 113265132 to 113265147 15 - TSS region transcription start site region 117947
Ighe 12 113269263 to 113273248 3985 - gene segment Immunoglobulin heavy constant epsilon
Ighg2c 12 113287389 to 113288932 1543 - gene segment immunoglobulin heavy constant gamma 2C
Tssr117948 12 113287858 to 113287877 19 - TSS region transcription start site region 117948
Tssr117949 12 113288746 to 113288762 16 - TSS region transcription start site region 117949
D12Mit41.3 12 113302899 to 113303023 124 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 41.3
D12Mit41 12 113302996 to 113303215 219 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 41
D12Mit41.1 12 113303159 to 113303300 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 41.1
Ighg2b 12 113304314 to 113307933 3619 - gene segment immunoglobulin heavy constant gamma 2B
Tssr117950 12 113307085 to 113307105 20 - TSS region transcription start site region 117950
Tssr117951 12 113307912 to 113307923 11 - TSS region transcription start site region 117951
Gm37944 12 113315712 to 113317877 2165 + pseudogenic gene segment predicted gene, 37944
Ighg1 12 113326544 to 113330523 3979 - gene segment immunoglobulin heavy constant gamma 1 (G1m marker)
Tssr117952 12 113329295 to 113329296 1 - TSS region transcription start site region 117952
Tssr117953 12 113329466 to 113329475 9 - TSS region transcription start site region 117953
Tssr117954 12 113329701 to 113329716 15 - TSS region transcription start site region 117954
Tssr117955 12 113330427 to 113330440 13 - TSS region transcription start site region 117955
Tssr117956 12 113330502 to 113330514 12 - TSS region transcription start site region 117956
Tssr117957 12 113330518 to 113330523 5 - TSS region transcription start site region 117957
Ighg3 12 113357442 to 113361232 3790 - gene segment Immunoglobulin heavy constant gamma 3
Tssr115498 12 113359910 to 113359956 46 + TSS region transcription start site region 115498
Tssr117958 12 113360371 to 113360398 27 - TSS region transcription start site region 117958
Tssr3970 12 113360554 to 113360574 20 - TSS region transcription start site region 3970
D12Mit20 12 113361566 to 113361762 196 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 20
Igh-8 12 113365795 to 113367226 1431 gene segment immunoglobulin heavy chain 8 (heavy chain of IgG3)
Tssr117959 12 113366503 to 113366538 35 - TSS region transcription start site region 117959
Gm17421 12 113369522 to 113372201 2679 + pseudogene predicted gene, 17421
Gm9134 12 113381011 to 113381561 550 - pseudogene predicted gene 9134
Cpgi5210 12 113381449 to 113381734 285 CpG island CpG island 5210
Gm9136 12 113396783 to 113397225 442 - pseudogene predicted gene 9136
Gm5190 12 113397229 to 113397585 356 + pseudogene predicted gene 5190
Tssr117960 12 113407307 to 113407318 11 - TSS region transcription start site region 117960
Ighd 12 113407535 to 113416324 8789 - gene segment immunoglobulin heavy constant delta
Tssr117961 12 113414396 to 113414408 12 - TSS region transcription start site region 117961
Tssr117962 12 113414583 to 113414594 11 - TSS region transcription start site region 117962
Tssr117963 12 113415553 to 113415566 13 - TSS region transcription start site region 117963
Tssr117964 12 113416305 to 113416314 9 - TSS region transcription start site region 117964
Ighm 12 113418826 to 113422730 3904 - gene segment immunoglobulin heavy constant mu
D12Mit8 12 113419742 to 113419913 171 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 8
Egq10 12 113419913 to 80909934 -32509979 QTL early growth QTL 10
W6q10 12 113419913 to 80909934 -32509979 QTL weight 6 weeks QTL 10
Tailaq1 12 113419913 to 80909934 -32509979 QTL tail length adjusted QTL 1
Lvrq10 12 113419913 to 80909934 -32509979 QTL liver weight QTL 10
Tssr117965 12 113419994 to 113420006 12 - TSS region transcription start site region 117965
Tssr117966 12 113421115 to 113421132 17 - TSS region transcription start site region 117966
Tssr117967 12 113421159 to 113421174 15 - TSS region transcription start site region 117967
Tssr117968 12 113421188 to 113421199 11 - TSS region transcription start site region 117968
Tssr117969 12 113421422 to 113421441 19 - TSS region transcription start site region 117969
Tssr117970 12 113421469 to 113421492 23 - TSS region transcription start site region 117970
Tssr115499 12 113421605 to 113421617 12 + TSS region transcription start site region 115499
Tssr117971 12 113421632 to 113421692 60 - TSS region transcription start site region 117971
Tssr115500 12 113421641 to 113421661 20 + TSS region transcription start site region 115500
Tssr117972 12 113421998 to 113422012 14 - TSS region transcription start site region 117972
Tssr117973 12 113422034 to 113422043 9 - TSS region transcription start site region 117973
Tssr115501 12 113422040 to 113422075 35 + TSS region transcription start site region 115501
Tssr117974 12 113422067 to 113422118 51 - TSS region transcription start site region 117974
Tssr115502 12 113422082 to 113422101 19 + TSS region transcription start site region 115502
Tssr117975 12 113422142 to 113422171 29 - TSS region transcription start site region 117975
Tssr117976 12 113422201 to 113422229 28 - TSS region transcription start site region 117976
Tssr117977 12 113422235 to 113422271 36 - TSS region transcription start site region 117977
Tssr117978 12 113422386 to 113422414 28 - TSS region transcription start site region 117978
Tssr117979 12 113422511 to 113422518 7 - TSS region transcription start site region 117979
Tssr115503 12 113422529 to 113422542 13 + TSS region transcription start site region 115503
Tssr117980 12 113422532 to 113422548 16 - TSS region transcription start site region 117980
Tssr117981 12 113422631 to 113422641 10 - TSS region transcription start site region 117981
Tssr117982 12 113422652 to 113422661 9 - TSS region transcription start site region 117982
Tssr117983 12 113422692 to 113422714 22 - TSS region transcription start site region 117983
Tssr117984 12 113422735 to 113422744 9 - TSS region transcription start site region 117984