Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:113092054-116202057

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595 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plyid 12 109217459 to 115921502 6704043 QTL Polymeric IgA dominance
Scrd2 12 109969663 to 113361762 3392099 heritable phenotypic marker smallest common region of deletion 2
Cpgi5201 12 113097397 to 113099414 2017 CpG island CpG island 5201
Tssr115471 12 113098199 to 113098267 68 + TSS region transcription start site region 115471
Mta1 12 113098278 to 113137206 38928 + protein coding gene metastasis associated 1
Tssr115472 12 113132829 to 113132852 23 + TSS region transcription start site region 115472
Tssr115473 12 113133176 to 113133215 39 + TSS region transcription start site region 115473
Tssr115474 12 113133469 to 113133480 11 + TSS region transcription start site region 115474
Tssr115475 12 113133508 to 113133528 20 + TSS region transcription start site region 115475
F930026P19Rik 12 113138355 to 113140140 1785 - lncRNA gene RIKEN cDNA F930026P19 gene
Cpgi5202 12 113139717 to 113141258 1541 CpG island CpG island 5202
Tssr117934 12 113140098 to 113140106 8 - TSS region transcription start site region 117934
Tssr117935 12 113140126 to 113140143 17 - TSS region transcription start site region 117935
Tssr115476 12 113140198 to 113140257 59 + TSS region transcription start site region 115476
Crip2 12 113140236 to 113145506 5270 + protein coding gene cysteine rich protein 2
Tssr115477 12 113140473 to 113140482 9 + TSS region transcription start site region 115477
Tssr115478 12 113140500 to 113140565 65 + TSS region transcription start site region 115478
Tssr115479 12 113140566 to 113140577 11 + TSS region transcription start site region 115479
Tssr3963 12 113140592 to 113140599 7 + TSS region transcription start site region 3963
Tssr3964 12 113140603 to 113140608 5 + TSS region transcription start site region 3964
Tssr3965 12 113140666 to 113140670 4 + TSS region transcription start site region 3965
Tssr3966 12 113140707 to 113140718 11 + TSS region transcription start site region 3966
Tssr115480 12 113141504 to 113141509 5 + TSS region transcription start site region 115480
Tssr115481 12 113142765 to 113142823 58 + TSS region transcription start site region 115481
Tssr115482 12 113142836 to 113142861 25 + TSS region transcription start site region 115482
Tssr115483 12 113142864 to 113142880 16 + TSS region transcription start site region 115483
Tssr115484 12 113143510 to 113143547 37 + TSS region transcription start site region 115484
Tssr115485 12 113144024 to 113144037 13 + TSS region transcription start site region 115485
Tssr3967 12 113145462 to 113145474 12 + TSS region transcription start site region 3967
Gm30599 12 113145603 to 113147877 2274 + protein coding gene predicted gene, 30599
Tssr115486 12 113146311 to 113146335 24 + TSS region transcription start site region 115486
Tssr115487 12 113146479 to 113146527 48 + TSS region transcription start site region 115487
Cpgi5203 12 113146481 to 113147138 657 CpG island CpG island 5203
Tssr117936 12 113147509 to 113147521 12 - TSS region transcription start site region 117936
Tssr115488 12 113148691 to 113148704 13 + TSS region transcription start site region 115488
9230109C02Rik 12 113150389 to 113151357 968 unclassified gene RIKEN cDNA 9230109C02 gene
Cpgi5204 12 113151824 to 113152629 805 CpG island CpG island 5204
Crip1 12 113152012 to 113153879 1867 + protein coding gene cysteine-rich protein 1 (intestinal)
Tssr115489 12 113152043 to 113152057 14 + TSS region transcription start site region 115489
Tssr115490 12 113152637 to 113152651 14 + TSS region transcription start site region 115490
Tssr115491 12 113152771 to 113152800 29 + TSS region transcription start site region 115491
Tssr117937 12 113153874 to 113153877 3 - TSS region transcription start site region 117937
Cpgi5205 12 113155090 to 113156765 1675 CpG island CpG island 5205
Tssr117938 12 113155190 to 113155201 11 - TSS region transcription start site region 117938
Tssr115492 12 113155362 to 113155384 22 + TSS region transcription start site region 115492
Tssr115493 12 113156403 to 113156442 39 + TSS region transcription start site region 115493
Tedc1 12 113156421 to 113165458 9037 + protein coding gene tubulin epsilon and delta complex 1
Gm43310 12 113172487 to 113173306 819 - pseudogene predicted gene 43310
Cpgi5206 12 113185207 to 113186776 1569 CpG island CpG island 5206
Tssr115494 12 113185877 to 113185937 60 + TSS region transcription start site region 115494
Tmem121 12 113185930 to 113189523 3593 + protein coding gene transmembrane protein 121
Cpgi5207 12 113187485 to 113189374 1889 CpG island CpG island 5207
Cpgi5208 12 113204309 to 113204489 180 CpG island CpG island 5208
Gm25622 12 113214149 to 113214252 103 + snRNA gene predicted gene, 25622
Cpgi5209 12 113214376 to 113214588 212 CpG island CpG island 5209
Tssr117939 12 113215020 to 113215054 34 - TSS region transcription start site region 117939
Igha 12 113256204 to 113260236 4032 - gene segment immunoglobulin heavy constant alpha
Tssr3968 12 113258740 to 113258788 48 - TSS region transcription start site region 3968
Igh 12 113258768 to 116009954 2751186 - complex/cluster/region immunoglobulin heavy chain complex
Tssr3969 12 113259120 to 113259141 21 - TSS region transcription start site region 3969
Tssr117940 12 113259540 to 113259549 9 - TSS region transcription start site region 117940
Tssr115495 12 113259627 to 113259658 31 + TSS region transcription start site region 115495
Tssr117941 12 113259670 to 113259706 36 - TSS region transcription start site region 117941
Tssr117942 12 113259974 to 113259982 8 - TSS region transcription start site region 117942
Tssr117943 12 113260028 to 113260039 11 - TSS region transcription start site region 117943
Tssr117944 12 113260046 to 113260062 16 - TSS region transcription start site region 117944
Tssr115496 12 113260160 to 113260171 11 + TSS region transcription start site region 115496
Tssr115497 12 113260176 to 113260197 21 + TSS region transcription start site region 115497
Tssr117945 12 113260217 to 113260232 15 - TSS region transcription start site region 117945
Igh-7 12 113264521 to 113277715 13194 gene segment immunoglobulin heavy chain 7 (heavy chain of IgE)
Igh-Ia 12 113264670 to 113265262 592 gene segment immunoglobulin heavy chain Ia
Tssr117946 12 113265070 to 113265082 12 - TSS region transcription start site region 117946
Tssr117947 12 113265132 to 113265147 15 - TSS region transcription start site region 117947
Ighe 12 113269263 to 113273248 3985 - gene segment Immunoglobulin heavy constant epsilon
Ighg2c 12 113287389 to 113288932 1543 - gene segment immunoglobulin heavy constant gamma 2C
Tssr117948 12 113287858 to 113287877 19 - TSS region transcription start site region 117948
Tssr117949 12 113288746 to 113288762 16 - TSS region transcription start site region 117949
D12Mit41.3 12 113302899 to 113303023 124 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 41.3
D12Mit41 12 113302996 to 113303215 219 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 41
D12Mit41.1 12 113303159 to 113303300 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 41.1
Ighg2b 12 113304314 to 113307933 3619 - gene segment immunoglobulin heavy constant gamma 2B
Tssr117950 12 113307085 to 113307105 20 - TSS region transcription start site region 117950
Tssr117951 12 113307912 to 113307923 11 - TSS region transcription start site region 117951
Gm37944 12 113315712 to 113317877 2165 + pseudogenic gene segment predicted gene, 37944
Ighg1 12 113326544 to 113330523 3979 - gene segment immunoglobulin heavy constant gamma 1 (G1m marker)
Tssr117952 12 113329295 to 113329296 1 - TSS region transcription start site region 117952
Tssr117953 12 113329466 to 113329475 9 - TSS region transcription start site region 117953
Tssr117954 12 113329701 to 113329716 15 - TSS region transcription start site region 117954
Tssr117955 12 113330427 to 113330440 13 - TSS region transcription start site region 117955
Tssr117956 12 113330502 to 113330514 12 - TSS region transcription start site region 117956
Tssr117957 12 113330518 to 113330523 5 - TSS region transcription start site region 117957
Ighg3 12 113357442 to 113361232 3790 - gene segment Immunoglobulin heavy constant gamma 3
Tssr115498 12 113359910 to 113359956 46 + TSS region transcription start site region 115498
Tssr117958 12 113360371 to 113360398 27 - TSS region transcription start site region 117958
Tssr3970 12 113360554 to 113360574 20 - TSS region transcription start site region 3970
D12Mit20 12 113361566 to 113361762 196 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 20
Igh-8 12 113365795 to 113367226 1431 gene segment immunoglobulin heavy chain 8 (heavy chain of IgG3)
Tssr117959 12 113366503 to 113366538 35 - TSS region transcription start site region 117959
Gm17421 12 113369522 to 113372201 2679 + pseudogene predicted gene, 17421
Gm9134 12 113381011 to 113381561 550 - pseudogene predicted gene 9134
Cpgi5210 12 113381449 to 113381734 285 CpG island CpG island 5210
Gm9136 12 113396783 to 113397225 442 - pseudogene predicted gene 9136
Gm5190 12 113397229 to 113397585 356 + pseudogene predicted gene 5190
Tssr117960 12 113407307 to 113407318 11 - TSS region transcription start site region 117960
Ighd 12 113407535 to 113416324 8789 - gene segment immunoglobulin heavy constant delta
Tssr117961 12 113414396 to 113414408 12 - TSS region transcription start site region 117961
Tssr117962 12 113414583 to 113414594 11 - TSS region transcription start site region 117962
Tssr117963 12 113415553 to 113415566 13 - TSS region transcription start site region 117963
Tssr117964 12 113416305 to 113416314 9 - TSS region transcription start site region 117964
Ighm 12 113418826 to 113422730 3904 - gene segment immunoglobulin heavy constant mu
D12Mit8 12 113419742 to 113419913 171 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 8
Tailaq1 12 113419913 to 80909934 -32509979 QTL tail length adjusted QTL 1
Egq10 12 113419913 to 80909934 -32509979 QTL early growth QTL 10
Lvrq10 12 113419913 to 80909934 -32509979 QTL liver weight QTL 10
W6q10 12 113419913 to 80909934 -32509979 QTL weight 6 weeks QTL 10
Tssr117965 12 113419994 to 113420006 12 - TSS region transcription start site region 117965
Tssr117966 12 113421115 to 113421132 17 - TSS region transcription start site region 117966
Tssr117967 12 113421159 to 113421174 15 - TSS region transcription start site region 117967
Tssr117968 12 113421188 to 113421199 11 - TSS region transcription start site region 117968
Tssr117969 12 113421422 to 113421441 19 - TSS region transcription start site region 117969
Tssr117970 12 113421469 to 113421492 23 - TSS region transcription start site region 117970
Tssr115499 12 113421605 to 113421617 12 + TSS region transcription start site region 115499
Tssr117971 12 113421632 to 113421692 60 - TSS region transcription start site region 117971
Tssr115500 12 113421641 to 113421661 20 + TSS region transcription start site region 115500
Tssr117972 12 113421998 to 113422012 14 - TSS region transcription start site region 117972
Tssr117973 12 113422034 to 113422043 9 - TSS region transcription start site region 117973
Tssr115501 12 113422040 to 113422075 35 + TSS region transcription start site region 115501
Tssr117974 12 113422067 to 113422118 51 - TSS region transcription start site region 117974
Tssr115502 12 113422082 to 113422101 19 + TSS region transcription start site region 115502
Tssr117975 12 113422142 to 113422171 29 - TSS region transcription start site region 117975
Tssr117976 12 113422201 to 113422229 28 - TSS region transcription start site region 117976
Tssr117977 12 113422235 to 113422271 36 - TSS region transcription start site region 117977
Tssr117978 12 113422386 to 113422414 28 - TSS region transcription start site region 117978
Tssr117979 12 113422511 to 113422518 7 - TSS region transcription start site region 117979
Tssr115503 12 113422529 to 113422542 13 + TSS region transcription start site region 115503
Tssr117980 12 113422532 to 113422548 16 - TSS region transcription start site region 117980
Tssr117981 12 113422631 to 113422641 10 - TSS region transcription start site region 117981
Tssr117982 12 113422652 to 113422661 9 - TSS region transcription start site region 117982
Tssr117983 12 113422692 to 113422714 22 - TSS region transcription start site region 117983
Tssr117984 12 113422735 to 113422744 9 - TSS region transcription start site region 117984
Gm25747 12 113424645 to 113424722 77 - miRNA gene predicted gene, 25747
Gm24022 12 113424724 to 113424783 59 - miRNA gene predicted gene, 24022
Gm22175 12 113425150 to 113425227 77 - miRNA gene predicted gene, 22175
Tssr117985 12 113425361 to 113425390 29 - TSS region transcription start site region 117985
Tssr117986 12 113425420 to 113425434 14 - TSS region transcription start site region 117986
Tssr117987 12 113425476 to 113425498 22 - TSS region transcription start site region 117987
Tssr117988 12 113425679 to 113425694 15 - TSS region transcription start site region 117988
Tssr117989 12 113425708 to 113425732 24 - TSS region transcription start site region 117989
Tssr117990 12 113425765 to 113425776 11 - TSS region transcription start site region 117990
Tssr117991 12 113425792 to 113425838 46 - TSS region transcription start site region 117991
Tssr117992 12 113425924 to 113425969 45 - TSS region transcription start site region 117992
Tssr117993 12 113425992 to 113426030 38 - TSS region transcription start site region 117993
Tssr117994 12 113426691 to 113426701 10 - TSS region transcription start site region 117994
Tssr117995 12 113426767 to 113426780 13 - TSS region transcription start site region 117995
Tssr117996 12 113426783 to 113426794 11 - TSS region transcription start site region 117996
Tssr117997 12 113426823 to 113426882 59 - TSS region transcription start site region 117997
Tssr117998 12 113426890 to 113426906 16 - TSS region transcription start site region 117998
Tssr117999 12 113426916 to 113426947 31 - TSS region transcription start site region 117999
Tssr118000 12 113426960 to 113426971 11 - TSS region transcription start site region 118000
Tssr118001 12 113427285 to 113427294 9 - TSS region transcription start site region 118001
Tssr118002 12 113427317 to 113427330 13 - TSS region transcription start site region 118002
Tssr118003 12 113427332 to 113427396 64 - TSS region transcription start site region 118003
Tssr118004 12 113427407 to 113427422 15 - TSS region transcription start site region 118004
Tssr3971 12 113427466 to 113427473 7 - TSS region transcription start site region 3971
Tssr3972 12 113427510 to 113427513 3 - TSS region transcription start site region 3972
Tssr3973 12 113427523 to 113427531 8 - TSS region transcription start site region 3973
Ighj4 12 113428514 to 113428567 53 - gene segment immunoglobulin heavy joining 4
Tssr118005 12 113428534 to 113428547 13 - TSS region transcription start site region 118005
Tssr118006 12 113428555 to 113428578 23 - TSS region transcription start site region 118006
Tssr118007 12 113428608 to 113428624 16 - TSS region transcription start site region 118007
Tssr118008 12 113428639 to 113428651 12 - TSS region transcription start site region 118008
Tssr118009 12 113428652 to 113428662 10 - TSS region transcription start site region 118009
Tssr118010 12 113428789 to 113428800 11 - TSS region transcription start site region 118010
Tssr118011 12 113428888 to 113428898 10 - TSS region transcription start site region 118011
Ighj3 12 113429085 to 113429132 47 - gene segment immunoglobulin heavy joining 3
Tssr118012 12 113429108 to 113429133 25 - TSS region transcription start site region 118012
Tssr118013 12 113429136 to 113429148 12 - TSS region transcription start site region 118013
Tssr118014 12 113429242 to 113429252 10 - TSS region transcription start site region 118014
Tssr118015 12 113429308 to 113429348 40 - TSS region transcription start site region 118015
Ighj2 12 113429468 to 113429515 47 - gene segment immunoglobulin heavy joining 2
Tssr118016 12 113429490 to 113429502 12 - TSS region transcription start site region 118016
Ighj1 12 113429781 to 113429833 52 - gene segment immunoglobulin heavy joining 1
Tssr118017 12 113429820 to 113429842 22 - TSS region transcription start site region 118017
Tssr115504 12 113430227 to 113430240 13 + TSS region transcription start site region 115504
Tssr118018 12 113430376 to 113430385 9 - TSS region transcription start site region 118018
Tssr118019 12 113430393 to 113430441 48 - TSS region transcription start site region 118019
Tssr118020 12 113430449 to 113430486 37 - TSS region transcription start site region 118020
Ighd4-1 12 113430528 to 113430538 10 - gene segment immunoglobulin heavy diversity 4-1
Tssr118021 12 113430589 to 113430603 14 - TSS region transcription start site region 118021
Tssr118022 12 113430621 to 113430632 11 - TSS region transcription start site region 118022
Tssr118023 12 113430786 to 113430795 9 - TSS region transcription start site region 118023
Tssr115505 12 113446406 to 113446410 4 + TSS region transcription start site region 115505
Ighd3-2 12 113448214 to 113448229 15 - gene segment immunoglobulin heavy diversity 3-2
Ighd5-6 12 113449588 to 113449597 9 - pseudogenic gene segment immunoglobulin heavy diversity 5-6
Ighd2-8 12 113450851 to 113450867 16 - gene segment immunoglobulin heavy diversity 2-8
Ighd5-5 12 113454942 to 113454951 9 - pseudogenic gene segment immunoglobulin heavy diversity 5-5
Ighd2-7 12 113456720 to 113456736 16 - gene segment immunoglobulin heavy diversity 2-7
Ighd5-8 12 113459864 to 113459892 28 - pseudogenic gene segment immunoglobulin heavy diversity 5-8
Ighd5-4 12 113460101 to 113460110 9 - pseudogenic gene segment immunoglobulin heavy diversity 5-4
Ighd2-6 12 113461369 to 113461385 16 - gene segment immunoglobulin heavy diversity 2-6