Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Scrd2 | 12 | 3392099 | heritable phenotypic marker | smallest common region of deletion 2 | ||
Cpgi5194 | 12 | 1252 | CpG island | CpG island 5194 | ||
Tssr117925 | 12 | 5 | - | TSS region | transcription start site region 117925 | |
6530406A20Rik | 12 | 2851 | unclassified gene | RIKEN cDNA 6530406A20 gene | ||
Tssr117926 | 12 | 20 | - | TSS region | transcription start site region 117926 | |
Tssr117927 | 12 | 19 | - | TSS region | transcription start site region 117927 | |
Brf1 | 12 | 40619 | - | protein coding gene | BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit | |
Cpgi5195 | 12 | 157 | CpG island | CpG island 5195 | ||
Gm47541 | 12 | 400 | - | sense intronic lncRNA gene | predicted gene, 47541 | |
Cpgi5196 | 12 | 1269 | CpG island | CpG island 5196 | ||
Tssr115449 | 12 | 81 | + | TSS region | transcription start site region 115449 | |
Btbd6 | 12 | 2463 | + | protein coding gene | BTB (POZ) domain containing 6 | |
Tssr115450 | 12 | 7 | + | TSS region | transcription start site region 115450 | |
Cpgi5197 | 12 | 1551 | CpG island | CpG island 5197 | ||
9230104M06Rik | 12 | 1962 | + | antisense lncRNA gene | RIKEN cDNA 9230104M06 gene | |
Tssr117928 | 12 | 12 | - | TSS region | transcription start site region 117928 | |
Tssr117929 | 12 | 26 | - | TSS region | transcription start site region 117929 | |
Tssr117930 | 12 | 74 | - | TSS region | transcription start site region 117930 | |
Tssr117931 | 12 | 32 | - | TSS region | transcription start site region 117931 | |
Tssr117932 | 12 | 37 | - | TSS region | transcription start site region 117932 | |
Cpgi5198 | 12 | 1435 | CpG island | CpG island 5198 | ||
Tssr117933 | 12 | 39 | - | TSS region | transcription start site region 117933 | |
Tssr115451 | 12 | 85 | + | TSS region | transcription start site region 115451 | |
Tssr115452 | 12 | 11 | + | TSS region | transcription start site region 115452 | |
Pacs2 | 12 | 59893 | + | protein coding gene | phosphofurin acidic cluster sorting protein 2 | |
Tssr115453 | 12 | 24 | + | TSS region | transcription start site region 115453 | |
Tssr115454 | 12 | 11 | + | TSS region | transcription start site region 115454 | |
Tssr115455 | 12 | 9 | + | TSS region | transcription start site region 115455 | |
Tssr115456 | 12 | 19 | + | TSS region | transcription start site region 115456 | |
Tssr115457 | 12 | 4 | + | TSS region | transcription start site region 115457 | |
Tssr115458 | 12 | 11 | + | TSS region | transcription start site region 115458 | |
Tssr115459 | 12 | 19 | + | TSS region | transcription start site region 115459 | |
Cpgi5199 | 12 | 181 | CpG island | CpG island 5199 | ||
Tssr115460 | 12 | 9 | + | TSS region | transcription start site region 115460 | |
Tssr115461 | 12 | 12 | + | TSS region | transcription start site region 115461 | |
Tssr115462 | 12 | 9 | + | TSS region | transcription start site region 115462 | |
Tssr115463 | 12 | 11 | + | TSS region | transcription start site region 115463 | |
Tssr115464 | 12 | 13 | + | TSS region | transcription start site region 115464 | |
Tssr115465 | 12 | 24 | + | TSS region | transcription start site region 115465 | |
Gm44471 | 12 | 99 | - | miRNA gene | predicted gene, 44471 | |
Cpgi5200 | 12 | 956 | CpG island | CpG island 5200 | ||
Tssr115466 | 12 | 49 | + | TSS region | transcription start site region 115466 | |
Tex22 | 12 | 14415 | + | protein coding gene | testis expressed gene 22 | |
Tssr115467 | 12 | 11 | + | TSS region | transcription start site region 115467 | |
Tssr115468 | 12 | 24 | + | TSS region | transcription start site region 115468 | |
Tssr115469 | 12 | 13 | + | TSS region | transcription start site region 115469 | |
Tssr115470 | 12 | 3 | + | TSS region | transcription start site region 115470 | |
Cpgi5201 | 12 | 2017 | CpG island | CpG island 5201 | ||
Tssr115471 | 12 | 68 | + | TSS region | transcription start site region 115471 | |
Mta1 | 12 | 38928 | + | protein coding gene | metastasis associated 1 | |
Tssr115472 | 12 | 23 | + | TSS region | transcription start site region 115472 | |
Tssr115473 | 12 | 39 | + | TSS region | transcription start site region 115473 | |
Tssr115474 | 12 | 11 | + | TSS region | transcription start site region 115474 | |
Tssr115475 | 12 | 20 | + | TSS region | transcription start site region 115475 | |
F930026P19Rik | 12 | 1785 | - | lncRNA gene | RIKEN cDNA F930026P19 gene | |
Cpgi5202 | 12 | 1541 | CpG island | CpG island 5202 | ||
Tssr117934 | 12 | 8 | - | TSS region | transcription start site region 117934 | |
Tssr117935 | 12 | 17 | - | TSS region | transcription start site region 117935 | |
Tssr115476 | 12 | 59 | + | TSS region | transcription start site region 115476 | |
Crip2 | 12 | 5270 | + | protein coding gene | cysteine rich protein 2 | |
Tssr115477 | 12 | 9 | + | TSS region | transcription start site region 115477 | |
Tssr115478 | 12 | 65 | + | TSS region | transcription start site region 115478 | |
Tssr115479 | 12 | 11 | + | TSS region | transcription start site region 115479 | |
Tssr3963 | 12 | 7 | + | TSS region | transcription start site region 3963 | |
Tssr3964 | 12 | 5 | + | TSS region | transcription start site region 3964 | |
Tssr3965 | 12 | 4 | + | TSS region | transcription start site region 3965 | |
Tssr3966 | 12 | 11 | + | TSS region | transcription start site region 3966 | |
Tssr115480 | 12 | 5 | + | TSS region | transcription start site region 115480 | |
Tssr115481 | 12 | 58 | + | TSS region | transcription start site region 115481 | |
Tssr115482 | 12 | 25 | + | TSS region | transcription start site region 115482 | |
Tssr115483 | 12 | 16 | + | TSS region | transcription start site region 115483 | |
Tssr115484 | 12 | 37 | + | TSS region | transcription start site region 115484 | |
Tssr115485 | 12 | 13 | + | TSS region | transcription start site region 115485 | |
Tssr3967 | 12 | 12 | + | TSS region | transcription start site region 3967 | |
Gm30599 | 12 | 2274 | + | protein coding gene | predicted gene, 30599 | |
Tssr115486 | 12 | 24 | + | TSS region | transcription start site region 115486 | |
Tssr115487 | 12 | 48 | + | TSS region | transcription start site region 115487 | |
Cpgi5203 | 12 | 657 | CpG island | CpG island 5203 | ||
Tssr117936 | 12 | 12 | - | TSS region | transcription start site region 117936 | |
Tssr115488 | 12 | 13 | + | TSS region | transcription start site region 115488 | |
9230109C02Rik | 12 | 968 | unclassified gene | RIKEN cDNA 9230109C02 gene | ||
Cpgi5204 | 12 | 805 | CpG island | CpG island 5204 | ||
Crip1 | 12 | 1867 | + | protein coding gene | cysteine-rich protein 1 (intestinal) | |
Tssr115489 | 12 | 14 | + | TSS region | transcription start site region 115489 | |
Tssr115490 | 12 | 14 | + | TSS region | transcription start site region 115490 | |
Tssr115491 | 12 | 29 | + | TSS region | transcription start site region 115491 | |
Tssr117937 | 12 | 3 | - | TSS region | transcription start site region 117937 | |
Cpgi5205 | 12 | 1675 | CpG island | CpG island 5205 | ||
Tssr117938 | 12 | 11 | - | TSS region | transcription start site region 117938 | |
Tssr115492 | 12 | 22 | + | TSS region | transcription start site region 115492 | |
Tssr115493 | 12 | 39 | + | TSS region | transcription start site region 115493 | |
Tedc1 | 12 | 9037 | + | protein coding gene | tubulin epsilon and delta complex 1 | |
Gm43310 | 12 | 819 | - | pseudogene | predicted gene 43310 | |
Cpgi5206 | 12 | 1569 | CpG island | CpG island 5206 | ||
Tssr115494 | 12 | 60 | + | TSS region | transcription start site region 115494 | |
Tmem121 | 12 | 3593 | + | protein coding gene | transmembrane protein 121 | |
Cpgi5207 | 12 | 1889 | CpG island | CpG island 5207 | ||
Cpgi5208 | 12 | 180 | CpG island | CpG island 5208 | ||
Gm25622 | 12 | 103 | + | snRNA gene | predicted gene, 25622 | |
Cpgi5209 | 12 | 212 | CpG island | CpG island 5209 | ||
Tssr117939 | 12 | 34 | - | TSS region | transcription start site region 117939 | |
Igha | 12 | 4032 | - | gene segment | immunoglobulin heavy constant alpha | |
Tssr3968 | 12 | 48 | - | TSS region | transcription start site region 3968 | |
Igh | 12 | 2751186 | - | complex/cluster/region | immunoglobulin heavy chain complex | |
Tssr3969 | 12 | 21 | - | TSS region | transcription start site region 3969 | |
Tssr117940 | 12 | 9 | - | TSS region | transcription start site region 117940 | |
Tssr115495 | 12 | 31 | + | TSS region | transcription start site region 115495 | |
Tssr117941 | 12 | 36 | - | TSS region | transcription start site region 117941 | |
Tssr117942 | 12 | 8 | - | TSS region | transcription start site region 117942 | |
Tssr117943 | 12 | 11 | - | TSS region | transcription start site region 117943 | |
Tssr117944 | 12 | 16 | - | TSS region | transcription start site region 117944 | |
Tssr115496 | 12 | 11 | + | TSS region | transcription start site region 115496 | |
Tssr115497 | 12 | 21 | + | TSS region | transcription start site region 115497 | |
Tssr117945 | 12 | 15 | - | TSS region | transcription start site region 117945 | |
Igh-7 | 12 | 13194 | gene segment | immunoglobulin heavy chain 7 (heavy chain of IgE) | ||
Igh-Ia | 12 | 592 | gene segment | immunoglobulin heavy chain Ia | ||
Tssr117946 | 12 | 12 | - | TSS region | transcription start site region 117946 | |
Tssr117947 | 12 | 15 | - | TSS region | transcription start site region 117947 | |
Ighe | 12 | 3985 | - | gene segment | Immunoglobulin heavy constant epsilon | |
Ighg2c | 12 | 1543 | - | gene segment | immunoglobulin heavy constant gamma 2C | |
Tssr117948 | 12 | 19 | - | TSS region | transcription start site region 117948 | |
Tssr117949 | 12 | 16 | - | TSS region | transcription start site region 117949 | |
D12Mit41.3 | 12 | 124 | DNA segment | DNA segment, Chr 12, Massachusetts Institute of Technology 41.3 | ||
D12Mit41 | 12 | 219 | DNA segment | DNA segment, Chr 12, Massachusetts Institute of Technology 41 | ||
D12Mit41.1 | 12 | 141 | DNA segment | DNA segment, Chr 12, Massachusetts Institute of Technology 41.1 | ||
Ighg2b | 12 | 3619 | - | gene segment | immunoglobulin heavy constant gamma 2B | |
Tssr117950 | 12 | 20 | - | TSS region | transcription start site region 117950 | |
Tssr117951 | 12 | 11 | - | TSS region | transcription start site region 117951 | |
Gm37944 | 12 | 2165 | + | pseudogenic gene segment | predicted gene, 37944 | |
Ighg1 | 12 | 3979 | - | gene segment | immunoglobulin heavy constant gamma 1 (G1m marker) | |
Tssr117952 | 12 | 1 | - | TSS region | transcription start site region 117952 | |
Tssr117953 | 12 | 9 | - | TSS region | transcription start site region 117953 | |
Tssr117954 | 12 | 15 | - | TSS region | transcription start site region 117954 | |
Tssr117955 | 12 | 13 | - | TSS region | transcription start site region 117955 | |
Tssr117956 | 12 | 12 | - | TSS region | transcription start site region 117956 | |
Tssr117957 | 12 | 5 | - | TSS region | transcription start site region 117957 | |
Ighg3 | 12 | 3790 | - | gene segment | Immunoglobulin heavy constant gamma 3 | |
Tssr115498 | 12 | 46 | + | TSS region | transcription start site region 115498 | |
Tssr117958 | 12 | 27 | - | TSS region | transcription start site region 117958 | |
Tssr3970 | 12 | 20 | - | TSS region | transcription start site region 3970 | |
D12Mit20 | 12 | 196 | DNA segment | DNA segment, Chr 12, Massachusetts Institute of Technology 20 | ||
Igh-8 | 12 | 1431 | gene segment | immunoglobulin heavy chain 8 (heavy chain of IgG3) | ||
Tssr117959 | 12 | 35 | - | TSS region | transcription start site region 117959 | |
Gm17421 | 12 | 2679 | + | pseudogene | predicted gene, 17421 | |
Gm9134 | 12 | 550 | - | pseudogene | predicted gene 9134 | |
Cpgi5210 | 12 | 285 | CpG island | CpG island 5210 | ||
Gm9136 | 12 | 442 | - | pseudogene | predicted gene 9136 | |
Gm5190 | 12 | 356 | + | pseudogene | predicted gene 5190 | |
Tssr117960 | 12 | 11 | - | TSS region | transcription start site region 117960 | |
Ighd | 12 | 8789 | - | gene segment | immunoglobulin heavy constant delta | |
Tssr117961 | 12 | 12 | - | TSS region | transcription start site region 117961 | |
Tssr117962 | 12 | 11 | - | TSS region | transcription start site region 117962 | |
Tssr117963 | 12 | 13 | - | TSS region | transcription start site region 117963 | |
Tssr117964 | 12 | 9 | - | TSS region | transcription start site region 117964 | |
Ighm | 12 | 3904 | - | gene segment | immunoglobulin heavy constant mu | |
D12Mit8 | 12 | 171 | DNA segment | DNA segment, Chr 12, Massachusetts Institute of Technology 8 | ||
Tailaq1 | 12 | -32509979 | QTL | tail length adjusted QTL 1 | ||
W6q10 | 12 | -32509979 | QTL | weight 6 weeks QTL 10 | ||
Egq10 | 12 | -32509979 | QTL | early growth QTL 10 | ||
Lvrq10 | 12 | -32509979 | QTL | liver weight QTL 10 | ||
Tssr117965 | 12 | 12 | - | TSS region | transcription start site region 117965 | |
Tssr117966 | 12 | 17 | - | TSS region | transcription start site region 117966 | |
Tssr117967 | 12 | 15 | - | TSS region | transcription start site region 117967 | |
Tssr117968 | 12 | 11 | - | TSS region | transcription start site region 117968 | |
Tssr117969 | 12 | 19 | - | TSS region | transcription start site region 117969 | |
Tssr117970 | 12 | 23 | - | TSS region | transcription start site region 117970 | |
Tssr115499 | 12 | 12 | + | TSS region | transcription start site region 115499 | |
Tssr117971 | 12 | 60 | - | TSS region | transcription start site region 117971 | |
Tssr115500 | 12 | 20 | + | TSS region | transcription start site region 115500 | |
Tssr117972 | 12 | 14 | - | TSS region | transcription start site region 117972 | |
Tssr117973 | 12 | 9 | - | TSS region | transcription start site region 117973 | |
Tssr115501 | 12 | 35 | + | TSS region | transcription start site region 115501 | |
Tssr117974 | 12 | 51 | - | TSS region | transcription start site region 117974 | |
Tssr115502 | 12 | 19 | + | TSS region | transcription start site region 115502 | |
Tssr117975 | 12 | 29 | - | TSS region | transcription start site region 117975 | |
Tssr117976 | 12 | 28 | - | TSS region | transcription start site region 117976 | |
Tssr117977 | 12 | 36 | - | TSS region | transcription start site region 117977 | |
Tssr117978 | 12 | 28 | - | TSS region | transcription start site region 117978 | |
Tssr117979 | 12 | 7 | - | TSS region | transcription start site region 117979 | |
Tssr115503 | 12 | 13 | + | TSS region | transcription start site region 115503 | |
Tssr117980 | 12 | 16 | - | TSS region | transcription start site region 117980 | |
Tssr117981 | 12 | 10 | - | TSS region | transcription start site region 117981 | |
Tssr117982 | 12 | 9 | - | TSS region | transcription start site region 117982 | |
Tssr117983 | 12 | 22 | - | TSS region | transcription start site region 117983 | |
Tssr117984 | 12 | 9 | - | TSS region | transcription start site region 117984 | |
Gm25747 | 12 | 77 | - | miRNA gene | predicted gene, 25747 | |
Gm24022 | 12 | 59 | - | miRNA gene | predicted gene, 24022 | |
Gm22175 | 12 | 77 | - | miRNA gene | predicted gene, 22175 | |
Tssr117985 | 12 | 29 | - | TSS region | transcription start site region 117985 | |
Tssr117986 | 12 | 14 | - | TSS region | transcription start site region 117986 | |
Tssr117987 | 12 | 22 | - | TSS region | transcription start site region 117987 | |
Tssr117988 | 12 | 15 | - | TSS region | transcription start site region 117988 | |
Tssr117989 | 12 | 24 | - | TSS region | transcription start site region 117989 | |
Tssr117990 | 12 | 11 | - | TSS region | transcription start site region 117990 | |
Tssr117991 | 12 | 46 | - | TSS region | transcription start site region 117991 | |
Tssr117992 | 12 | 45 | - | TSS region | transcription start site region 117992 | |
Tssr117993 | 12 | 38 | - | TSS region | transcription start site region 117993 | |
Tssr117994 | 12 | 10 | - | TSS region | transcription start site region 117994 | |
Tssr117995 | 12 | 13 | - | TSS region | transcription start site region 117995 | |
Tssr117996 | 12 | 11 | - | TSS region | transcription start site region 117996 |