Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:112926745-113017145

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Jag2 12 112907803 to 112929517 21714 - protein coding gene jagged 2
Cpgi5192 12 112928150 to 112930391 2241 CpG island CpG island 5192
Tssr117920 12 112929415 to 112929419 4 - TSS region transcription start site region 117920
Tssr117921 12 112929762 to 112929778 16 - TSS region transcription start site region 117921
Tssr117922 12 112929794 to 112929824 30 - TSS region transcription start site region 117922
Nudt14 12 112934291 to 112942124 7833 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 14
Cpgi5193 12 112941577 to 112942414 837 CpG island CpG island 5193
Tssr117923 12 112942090 to 112942097 7 - TSS region transcription start site region 117923
Tssr117924 12 112942102 to 112942150 48 - TSS region transcription start site region 117924
Gm26583 12 112946363 to 112950512 4149 - lincRNA gene predicted gene, 26583
Cpgi5194 12 112949763 to 112951015 1252 CpG island CpG island 5194
Tssr117925 12 112951577 to 112951582 5 - TSS region transcription start site region 117925
6530406A20Rik 12 112955546 to 112958397 2851 unclassified gene RIKEN cDNA 6530406A20 gene
Tssr117926 12 112959508 to 112959528 20 - TSS region transcription start site region 117926
Tssr117927 12 112959530 to 112959549 19 - TSS region transcription start site region 117927
Brf1 12 112960085 to 113000704 40619 - protein coding gene BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
Cpgi5195 12 112965834 to 112965991 157 CpG island CpG island 5195
Gm47541 12 112971745 to 112972145 400 - sense intronic lncRNA gene predicted gene, 47541
Cpgi5196 12 112976249 to 112977518 1269 CpG island CpG island 5196
Tssr115449 12 112976471 to 112976552 81 + TSS region transcription start site region 115449
Btbd6 12 112976482 to 112978945 2463 + protein coding gene BTB (POZ) domain containing 6
Tssr115450 12 112976745 to 112976752 7 + TSS region transcription start site region 115450
Cpgi5197 12 112999712 to 113001263 1551 CpG island CpG island 5197
9230104M06Rik 12 112999964 to 113001926 1962 + antisense lncRNA gene RIKEN cDNA 9230104M06 gene
Tssr117928 12 113000226 to 113000238 12 - TSS region transcription start site region 117928
Tssr117929 12 113000243 to 113000269 26 - TSS region transcription start site region 117929
Tssr117930 12 113000392 to 113000466 74 - TSS region transcription start site region 117930
Tssr117931 12 113000624 to 113000656 32 - TSS region transcription start site region 117931
Tssr117932 12 113000658 to 113000695 37 - TSS region transcription start site region 117932
Cpgi5198 12 113013784 to 113015219 1435 CpG island CpG island 5198
Tssr117933 12 113014224 to 113014263 39 - TSS region transcription start site region 117933
Tssr115451 12 113014385 to 113014470 85 + TSS region transcription start site region 115451
Tssr115452 12 113014502 to 113014513 11 + TSS region transcription start site region 115452
Pacs2 12 113014508 to 113074401 59893 + protein coding gene phosphofurin acidic cluster sorting protein 2
Tssr115453 12 113014515 to 113014539 24 + TSS region transcription start site region 115453
Tssr115454 12 113014546 to 113014557 11 + TSS region transcription start site region 115454
Tssr115455 12 113014559 to 113014568 9 + TSS region transcription start site region 115455