Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:112919763-112981015

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23 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Jag2 12 112907803 to 112929517 21714 - protein coding gene jagged 2
Mir6941 12 112920483 to 112920541 58 - miRNA gene microRNA 6941
Cpgi5192 12 112928150 to 112930391 2241 CpG island CpG island 5192
Tssr117920 12 112929415 to 112929419 4 - TSS region transcription start site region 117920
Tssr117921 12 112929762 to 112929778 16 - TSS region transcription start site region 117921
Tssr117922 12 112929794 to 112929824 30 - TSS region transcription start site region 117922
Nudt14 12 112934291 to 112942124 7833 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 14
Cpgi5193 12 112941577 to 112942414 837 CpG island CpG island 5193
Tssr117923 12 112942090 to 112942097 7 - TSS region transcription start site region 117923
Tssr117924 12 112942102 to 112942150 48 - TSS region transcription start site region 117924
Gm26583 12 112946363 to 112950512 4149 - lincRNA gene predicted gene, 26583
Cpgi5194 12 112949763 to 112951015 1252 CpG island CpG island 5194
Tssr117925 12 112951577 to 112951582 5 - TSS region transcription start site region 117925
6530406A20Rik 12 112955546 to 112958397 2851 unclassified gene RIKEN cDNA 6530406A20 gene
Tssr117926 12 112959508 to 112959528 20 - TSS region transcription start site region 117926
Tssr117927 12 112959530 to 112959549 19 - TSS region transcription start site region 117927
Brf1 12 112960085 to 113000704 40619 - protein coding gene BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
Cpgi5195 12 112965834 to 112965991 157 CpG island CpG island 5195
Gm47541 12 112971745 to 112972145 400 - sense intronic lncRNA gene predicted gene, 47541
Cpgi5196 12 112976249 to 112977518 1269 CpG island CpG island 5196
Tssr115449 12 112976471 to 112976552 81 + TSS region transcription start site region 115449
Btbd6 12 112976482 to 112978945 2463 + protein coding gene BTB (POZ) domain containing 6
Tssr115450 12 112976745 to 112976752 7 + TSS region transcription start site region 115450