Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:112898370-113148389

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Jag2 12 112907803 to 112929517 21714 - protein coding gene jagged 2
Cpgi5191 12 112913228 to 112913617 389 CpG island CpG island 5191
Tssr3962 12 112914587 to 112914596 9 - TSS region transcription start site region 3962
Tssr117918 12 112917626 to 112917638 12 - TSS region transcription start site region 117918
Tssr117919 12 112917639 to 112917647 8 - TSS region transcription start site region 117919
Mir6941 12 112920483 to 112920541 58 - miRNA gene microRNA 6941
Cpgi5192 12 112928150 to 112930391 2241 CpG island CpG island 5192
Tssr117920 12 112929415 to 112929419 4 - TSS region transcription start site region 117920
Tssr117921 12 112929762 to 112929778 16 - TSS region transcription start site region 117921
Tssr117922 12 112929794 to 112929824 30 - TSS region transcription start site region 117922
Nudt14 12 112934291 to 112942124 7833 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 14
Cpgi5193 12 112941577 to 112942414 837 CpG island CpG island 5193
Tssr117923 12 112942090 to 112942097 7 - TSS region transcription start site region 117923
Tssr117924 12 112942102 to 112942150 48 - TSS region transcription start site region 117924
Gm26583 12 112946363 to 112950512 4149 - lincRNA gene predicted gene, 26583
Cpgi5194 12 112949763 to 112951015 1252 CpG island CpG island 5194
Tssr117925 12 112951577 to 112951582 5 - TSS region transcription start site region 117925
6530406A20Rik 12 112955546 to 112958397 2851 unclassified gene RIKEN cDNA 6530406A20 gene
Tssr117926 12 112959508 to 112959528 20 - TSS region transcription start site region 117926
Tssr117927 12 112959530 to 112959549 19 - TSS region transcription start site region 117927
Brf1 12 112960085 to 113000704 40619 - protein coding gene BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
Cpgi5195 12 112965834 to 112965991 157 CpG island CpG island 5195
Gm47541 12 112971745 to 112972145 400 - sense intronic lncRNA gene predicted gene, 47541
Cpgi5196 12 112976249 to 112977518 1269 CpG island CpG island 5196
Tssr115449 12 112976471 to 112976552 81 + TSS region transcription start site region 115449
Btbd6 12 112976482 to 112978945 2463 + protein coding gene BTB (POZ) domain containing 6
Tssr115450 12 112976745 to 112976752 7 + TSS region transcription start site region 115450
Cpgi5197 12 112999712 to 113001263 1551 CpG island CpG island 5197
9230104M06Rik 12 112999964 to 113001926 1962 + antisense lncRNA gene RIKEN cDNA 9230104M06 gene
Tssr117928 12 113000226 to 113000238 12 - TSS region transcription start site region 117928
Tssr117929 12 113000243 to 113000269 26 - TSS region transcription start site region 117929
Tssr117930 12 113000392 to 113000466 74 - TSS region transcription start site region 117930
Tssr117931 12 113000624 to 113000656 32 - TSS region transcription start site region 117931
Tssr117932 12 113000658 to 113000695 37 - TSS region transcription start site region 117932
Cpgi5198 12 113013784 to 113015219 1435 CpG island CpG island 5198
Tssr117933 12 113014224 to 113014263 39 - TSS region transcription start site region 117933
Tssr115451 12 113014385 to 113014470 85 + TSS region transcription start site region 115451
Tssr115452 12 113014502 to 113014513 11 + TSS region transcription start site region 115452
Pacs2 12 113014508 to 113074401 59893 + protein coding gene phosphofurin acidic cluster sorting protein 2
Tssr115453 12 113014515 to 113014539 24 + TSS region transcription start site region 115453
Tssr115454 12 113014546 to 113014557 11 + TSS region transcription start site region 115454
Tssr115455 12 113014559 to 113014568 9 + TSS region transcription start site region 115455
Tssr115456 12 113022365 to 113022384 19 + TSS region transcription start site region 115456
Tssr115457 12 113022436 to 113022440 4 + TSS region transcription start site region 115457
Tssr115458 12 113022529 to 113022540 11 + TSS region transcription start site region 115458
Tssr115459 12 113023370 to 113023389 19 + TSS region transcription start site region 115459
Cpgi5199 12 113046928 to 113047109 181 CpG island CpG island 5199
Tssr115460 12 113049966 to 113049975 9 + TSS region transcription start site region 115460
Tssr115461 12 113050501 to 113050513 12 + TSS region transcription start site region 115461
Tssr115462 12 113050530 to 113050539 9 + TSS region transcription start site region 115462
Tssr115463 12 113050545 to 113050556 11 + TSS region transcription start site region 115463
Tssr115464 12 113052397 to 113052410 13 + TSS region transcription start site region 115464
Tssr115465 12 113052562 to 113052586 24 + TSS region transcription start site region 115465
Gm44471 12 113063339 to 113063438 99 - miRNA gene predicted gene, 44471
Cpgi5200 12 113074063 to 113075019 956 CpG island CpG island 5200
Tssr115466 12 113074475 to 113074524 49 + TSS region transcription start site region 115466
Tex22 12 113074502 to 113088917 14415 + protein coding gene testis expressed gene 22
Tssr115467 12 113074764 to 113074775 11 + TSS region transcription start site region 115467
Tssr115468 12 113074777 to 113074801 24 + TSS region transcription start site region 115468
Tssr115469 12 113074805 to 113074818 13 + TSS region transcription start site region 115469
Tssr115470 12 113074819 to 113074822 3 + TSS region transcription start site region 115470
Cpgi5201 12 113097397 to 113099414 2017 CpG island CpG island 5201
Tssr115471 12 113098199 to 113098267 68 + TSS region transcription start site region 115471
Mta1 12 113098278 to 113137206 38928 + protein coding gene metastasis associated 1
Tssr115472 12 113132829 to 113132852 23 + TSS region transcription start site region 115472
Tssr115473 12 113133176 to 113133215 39 + TSS region transcription start site region 115473
Tssr115474 12 113133469 to 113133480 11 + TSS region transcription start site region 115474
Tssr115475 12 113133508 to 113133528 20 + TSS region transcription start site region 115475
F930026P19Rik 12 113138355 to 113140140 1785 - lncRNA gene RIKEN cDNA F930026P19 gene
Cpgi5202 12 113139717 to 113141258 1541 CpG island CpG island 5202
Tssr117934 12 113140098 to 113140106 8 - TSS region transcription start site region 117934
Tssr117935 12 113140126 to 113140143 17 - TSS region transcription start site region 117935
Tssr115476 12 113140198 to 113140257 59 + TSS region transcription start site region 115476
Crip2 12 113140236 to 113145506 5270 + protein coding gene cysteine rich protein 2
Tssr115477 12 113140473 to 113140482 9 + TSS region transcription start site region 115477
Tssr115478 12 113140500 to 113140565 65 + TSS region transcription start site region 115478
Tssr115479 12 113140566 to 113140577 11 + TSS region transcription start site region 115479
Tssr3963 12 113140592 to 113140599 7 + TSS region transcription start site region 3963
Tssr3964 12 113140603 to 113140608 5 + TSS region transcription start site region 3964
Tssr3965 12 113140666 to 113140670 4 + TSS region transcription start site region 3965
Tssr3966 12 113140707 to 113140718 11 + TSS region transcription start site region 3966
Tssr115480 12 113141504 to 113141509 5 + TSS region transcription start site region 115480
Tssr115481 12 113142765 to 113142823 58 + TSS region transcription start site region 115481
Tssr115482 12 113142836 to 113142861 25 + TSS region transcription start site region 115482
Tssr115483 12 113142864 to 113142880 16 + TSS region transcription start site region 115483
Tssr115484 12 113143510 to 113143547 37 + TSS region transcription start site region 115484
Tssr115485 12 113144024 to 113144037 13 + TSS region transcription start site region 115485
Tssr3967 12 113145462 to 113145474 12 + TSS region transcription start site region 3967
Gm30599 12 113145603 to 113147877 2274 + protein coding gene predicted gene, 30599
Tssr115486 12 113146311 to 113146335 24 + TSS region transcription start site region 115486
Tssr115487 12 113146479 to 113146527 48 + TSS region transcription start site region 115487
Cpgi5203 12 113146481 to 113147138 657 CpG island CpG island 5203
Tssr117936 12 113147509 to 113147521 12 - TSS region transcription start site region 117936