Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:112888768-116379954

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673 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plyid 12 109217459 to 115921502 6704043 QTL Polymeric IgA dominance
Scrd2 12 109969663 to 113361762 3392099 heritable phenotypic marker smallest common region of deletion 2
D12Mit196 12 112891697 to 112891809 112 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 196
Jag2 12 112907803 to 112929517 21714 - protein coding gene jagged 2
Cpgi5191 12 112913228 to 112913617 389 CpG island CpG island 5191
Tssr3962 12 112914587 to 112914596 9 - TSS region transcription start site region 3962
Tssr117918 12 112917626 to 112917638 12 - TSS region transcription start site region 117918
Tssr117919 12 112917639 to 112917647 8 - TSS region transcription start site region 117919
Mir6941 12 112920483 to 112920541 58 - miRNA gene microRNA 6941
Cpgi5192 12 112928150 to 112930391 2241 CpG island CpG island 5192
Tssr117920 12 112929415 to 112929419 4 - TSS region transcription start site region 117920
Tssr117921 12 112929762 to 112929778 16 - TSS region transcription start site region 117921
Tssr117922 12 112929794 to 112929824 30 - TSS region transcription start site region 117922
Nudt14 12 112934291 to 112942124 7833 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 14
Cpgi5193 12 112941577 to 112942414 837 CpG island CpG island 5193
Tssr117923 12 112942090 to 112942097 7 - TSS region transcription start site region 117923
Tssr117924 12 112942102 to 112942150 48 - TSS region transcription start site region 117924
Gm26583 12 112946363 to 112950512 4149 - lincRNA gene predicted gene, 26583
Cpgi5194 12 112949763 to 112951015 1252 CpG island CpG island 5194
Tssr117925 12 112951577 to 112951582 5 - TSS region transcription start site region 117925
6530406A20Rik 12 112955546 to 112958397 2851 unclassified gene RIKEN cDNA 6530406A20 gene
Tssr117926 12 112959508 to 112959528 20 - TSS region transcription start site region 117926
Tssr117927 12 112959530 to 112959549 19 - TSS region transcription start site region 117927
Brf1 12 112960085 to 113000704 40619 - protein coding gene BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
Cpgi5195 12 112965834 to 112965991 157 CpG island CpG island 5195
Gm47541 12 112971745 to 112972145 400 - sense intronic lncRNA gene predicted gene, 47541
Cpgi5196 12 112976249 to 112977518 1269 CpG island CpG island 5196
Tssr115449 12 112976471 to 112976552 81 + TSS region transcription start site region 115449
Btbd6 12 112976482 to 112978945 2463 + protein coding gene BTB (POZ) domain containing 6
Tssr115450 12 112976745 to 112976752 7 + TSS region transcription start site region 115450
Cpgi5197 12 112999712 to 113001263 1551 CpG island CpG island 5197
9230104M06Rik 12 112999964 to 113001926 1962 + antisense lncRNA gene RIKEN cDNA 9230104M06 gene
Tssr117928 12 113000226 to 113000238 12 - TSS region transcription start site region 117928
Tssr117929 12 113000243 to 113000269 26 - TSS region transcription start site region 117929
Tssr117930 12 113000392 to 113000466 74 - TSS region transcription start site region 117930
Tssr117931 12 113000624 to 113000656 32 - TSS region transcription start site region 117931
Tssr117932 12 113000658 to 113000695 37 - TSS region transcription start site region 117932
Cpgi5198 12 113013784 to 113015219 1435 CpG island CpG island 5198
Tssr117933 12 113014224 to 113014263 39 - TSS region transcription start site region 117933
Tssr115451 12 113014385 to 113014470 85 + TSS region transcription start site region 115451
Tssr115452 12 113014502 to 113014513 11 + TSS region transcription start site region 115452
Pacs2 12 113014508 to 113074401 59893 + protein coding gene phosphofurin acidic cluster sorting protein 2
Tssr115453 12 113014515 to 113014539 24 + TSS region transcription start site region 115453
Tssr115454 12 113014546 to 113014557 11 + TSS region transcription start site region 115454
Tssr115455 12 113014559 to 113014568 9 + TSS region transcription start site region 115455
Tssr115456 12 113022365 to 113022384 19 + TSS region transcription start site region 115456
Tssr115457 12 113022436 to 113022440 4 + TSS region transcription start site region 115457
Tssr115458 12 113022529 to 113022540 11 + TSS region transcription start site region 115458
Tssr115459 12 113023370 to 113023389 19 + TSS region transcription start site region 115459
Cpgi5199 12 113046928 to 113047109 181 CpG island CpG island 5199
Tssr115460 12 113049966 to 113049975 9 + TSS region transcription start site region 115460
Tssr115461 12 113050501 to 113050513 12 + TSS region transcription start site region 115461
Tssr115462 12 113050530 to 113050539 9 + TSS region transcription start site region 115462
Tssr115463 12 113050545 to 113050556 11 + TSS region transcription start site region 115463
Tssr115464 12 113052397 to 113052410 13 + TSS region transcription start site region 115464
Tssr115465 12 113052562 to 113052586 24 + TSS region transcription start site region 115465
Gm44471 12 113063339 to 113063438 99 - miRNA gene predicted gene, 44471
Cpgi5200 12 113074063 to 113075019 956 CpG island CpG island 5200
Tssr115466 12 113074475 to 113074524 49 + TSS region transcription start site region 115466
Tex22 12 113074502 to 113088917 14415 + protein coding gene testis expressed gene 22
Tssr115467 12 113074764 to 113074775 11 + TSS region transcription start site region 115467
Tssr115468 12 113074777 to 113074801 24 + TSS region transcription start site region 115468
Tssr115469 12 113074805 to 113074818 13 + TSS region transcription start site region 115469
Tssr115470 12 113074819 to 113074822 3 + TSS region transcription start site region 115470
Cpgi5201 12 113097397 to 113099414 2017 CpG island CpG island 5201
Tssr115471 12 113098199 to 113098267 68 + TSS region transcription start site region 115471
Mta1 12 113098278 to 113137206 38928 + protein coding gene metastasis associated 1
Tssr115472 12 113132829 to 113132852 23 + TSS region transcription start site region 115472
Tssr115473 12 113133176 to 113133215 39 + TSS region transcription start site region 115473
Tssr115474 12 113133469 to 113133480 11 + TSS region transcription start site region 115474
Tssr115475 12 113133508 to 113133528 20 + TSS region transcription start site region 115475
F930026P19Rik 12 113138355 to 113140140 1785 - lncRNA gene RIKEN cDNA F930026P19 gene
Cpgi5202 12 113139717 to 113141258 1541 CpG island CpG island 5202
Tssr117934 12 113140098 to 113140106 8 - TSS region transcription start site region 117934
Tssr117935 12 113140126 to 113140143 17 - TSS region transcription start site region 117935
Tssr115476 12 113140198 to 113140257 59 + TSS region transcription start site region 115476
Crip2 12 113140236 to 113145506 5270 + protein coding gene cysteine rich protein 2
Tssr115477 12 113140473 to 113140482 9 + TSS region transcription start site region 115477
Tssr115478 12 113140500 to 113140565 65 + TSS region transcription start site region 115478
Tssr115479 12 113140566 to 113140577 11 + TSS region transcription start site region 115479
Tssr3963 12 113140592 to 113140599 7 + TSS region transcription start site region 3963
Tssr3964 12 113140603 to 113140608 5 + TSS region transcription start site region 3964
Tssr3965 12 113140666 to 113140670 4 + TSS region transcription start site region 3965
Tssr3966 12 113140707 to 113140718 11 + TSS region transcription start site region 3966
Tssr115480 12 113141504 to 113141509 5 + TSS region transcription start site region 115480
Tssr115481 12 113142765 to 113142823 58 + TSS region transcription start site region 115481
Tssr115482 12 113142836 to 113142861 25 + TSS region transcription start site region 115482
Tssr115483 12 113142864 to 113142880 16 + TSS region transcription start site region 115483
Tssr115484 12 113143510 to 113143547 37 + TSS region transcription start site region 115484
Tssr115485 12 113144024 to 113144037 13 + TSS region transcription start site region 115485
Tssr3967 12 113145462 to 113145474 12 + TSS region transcription start site region 3967
Gm30599 12 113145603 to 113147877 2274 + protein coding gene predicted gene, 30599
Tssr115486 12 113146311 to 113146335 24 + TSS region transcription start site region 115486
Tssr115487 12 113146479 to 113146527 48 + TSS region transcription start site region 115487
Cpgi5203 12 113146481 to 113147138 657 CpG island CpG island 5203
Tssr117936 12 113147509 to 113147521 12 - TSS region transcription start site region 117936
Tssr115488 12 113148691 to 113148704 13 + TSS region transcription start site region 115488
9230109C02Rik 12 113150389 to 113151357 968 unclassified gene RIKEN cDNA 9230109C02 gene
Cpgi5204 12 113151824 to 113152629 805 CpG island CpG island 5204
Crip1 12 113152012 to 113153879 1867 + protein coding gene cysteine-rich protein 1 (intestinal)
Tssr115489 12 113152043 to 113152057 14 + TSS region transcription start site region 115489
Tssr115490 12 113152637 to 113152651 14 + TSS region transcription start site region 115490
Tssr115491 12 113152771 to 113152800 29 + TSS region transcription start site region 115491
Tssr117937 12 113153874 to 113153877 3 - TSS region transcription start site region 117937
Cpgi5205 12 113155090 to 113156765 1675 CpG island CpG island 5205
Tssr117938 12 113155190 to 113155201 11 - TSS region transcription start site region 117938
Tssr115492 12 113155362 to 113155384 22 + TSS region transcription start site region 115492
Tssr115493 12 113156403 to 113156442 39 + TSS region transcription start site region 115493
Tedc1 12 113156421 to 113165458 9037 + protein coding gene tubulin epsilon and delta complex 1
Gm43310 12 113172487 to 113173306 819 - pseudogene predicted gene 43310
Cpgi5206 12 113185207 to 113186776 1569 CpG island CpG island 5206
Tssr115494 12 113185877 to 113185937 60 + TSS region transcription start site region 115494
Tmem121 12 113185930 to 113189523 3593 + protein coding gene transmembrane protein 121
Cpgi5207 12 113187485 to 113189374 1889 CpG island CpG island 5207
Cpgi5208 12 113204309 to 113204489 180 CpG island CpG island 5208
Gm25622 12 113214149 to 113214252 103 + snRNA gene predicted gene, 25622
Cpgi5209 12 113214376 to 113214588 212 CpG island CpG island 5209
Tssr117939 12 113215020 to 113215054 34 - TSS region transcription start site region 117939
Igha 12 113256204 to 113260236 4032 - gene segment immunoglobulin heavy constant alpha
Tssr3968 12 113258740 to 113258788 48 - TSS region transcription start site region 3968
Igh 12 113258768 to 116009954 2751186 - complex/cluster/region immunoglobulin heavy chain complex
Tssr3969 12 113259120 to 113259141 21 - TSS region transcription start site region 3969
Tssr117940 12 113259540 to 113259549 9 - TSS region transcription start site region 117940
Tssr115495 12 113259627 to 113259658 31 + TSS region transcription start site region 115495
Tssr117941 12 113259670 to 113259706 36 - TSS region transcription start site region 117941
Tssr117942 12 113259974 to 113259982 8 - TSS region transcription start site region 117942
Tssr117943 12 113260028 to 113260039 11 - TSS region transcription start site region 117943
Tssr117944 12 113260046 to 113260062 16 - TSS region transcription start site region 117944
Tssr115496 12 113260160 to 113260171 11 + TSS region transcription start site region 115496
Tssr115497 12 113260176 to 113260197 21 + TSS region transcription start site region 115497
Tssr117945 12 113260217 to 113260232 15 - TSS region transcription start site region 117945
Igh-7 12 113264521 to 113277715 13194 gene segment immunoglobulin heavy chain 7 (heavy chain of IgE)
Igh-Ia 12 113264670 to 113265262 592 gene segment immunoglobulin heavy chain Ia
Tssr117946 12 113265070 to 113265082 12 - TSS region transcription start site region 117946
Tssr117947 12 113265132 to 113265147 15 - TSS region transcription start site region 117947
Ighe 12 113269263 to 113273248 3985 - gene segment Immunoglobulin heavy constant epsilon
Ighg2c 12 113287389 to 113288932 1543 - gene segment immunoglobulin heavy constant gamma 2C
Tssr117948 12 113287858 to 113287877 19 - TSS region transcription start site region 117948
Tssr117949 12 113288746 to 113288762 16 - TSS region transcription start site region 117949
D12Mit41.3 12 113302899 to 113303023 124 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 41.3
D12Mit41 12 113302996 to 113303215 219 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 41
D12Mit41.1 12 113303159 to 113303300 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 41.1
Ighg2b 12 113304314 to 113307933 3619 - gene segment immunoglobulin heavy constant gamma 2B
Tssr117950 12 113307085 to 113307105 20 - TSS region transcription start site region 117950
Tssr117951 12 113307912 to 113307923 11 - TSS region transcription start site region 117951
Gm37944 12 113315712 to 113317877 2165 + pseudogenic gene segment predicted gene, 37944
Ighg1 12 113326544 to 113330523 3979 - gene segment immunoglobulin heavy constant gamma 1 (G1m marker)
Tssr117952 12 113329295 to 113329296 1 - TSS region transcription start site region 117952
Tssr117953 12 113329466 to 113329475 9 - TSS region transcription start site region 117953
Tssr117954 12 113329701 to 113329716 15 - TSS region transcription start site region 117954
Tssr117955 12 113330427 to 113330440 13 - TSS region transcription start site region 117955
Tssr117956 12 113330502 to 113330514 12 - TSS region transcription start site region 117956
Tssr117957 12 113330518 to 113330523 5 - TSS region transcription start site region 117957
Ighg3 12 113357442 to 113361232 3790 - gene segment Immunoglobulin heavy constant gamma 3
Tssr115498 12 113359910 to 113359956 46 + TSS region transcription start site region 115498
Tssr117958 12 113360371 to 113360398 27 - TSS region transcription start site region 117958
Tssr3970 12 113360554 to 113360574 20 - TSS region transcription start site region 3970
D12Mit20 12 113361566 to 113361762 196 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 20
Igh-8 12 113365795 to 113367226 1431 gene segment immunoglobulin heavy chain 8 (heavy chain of IgG3)
Tssr117959 12 113366503 to 113366538 35 - TSS region transcription start site region 117959
Gm17421 12 113369522 to 113372201 2679 + pseudogene predicted gene, 17421
Gm9134 12 113381011 to 113381561 550 - pseudogene predicted gene 9134
Cpgi5210 12 113381449 to 113381734 285 CpG island CpG island 5210
Gm9136 12 113396783 to 113397225 442 - pseudogene predicted gene 9136
Gm5190 12 113397229 to 113397585 356 + pseudogene predicted gene 5190
Tssr117960 12 113407307 to 113407318 11 - TSS region transcription start site region 117960
Ighd 12 113407535 to 113416324 8789 - gene segment immunoglobulin heavy constant delta
Tssr117961 12 113414396 to 113414408 12 - TSS region transcription start site region 117961
Tssr117962 12 113414583 to 113414594 11 - TSS region transcription start site region 117962
Tssr117963 12 113415553 to 113415566 13 - TSS region transcription start site region 117963
Tssr117964 12 113416305 to 113416314 9 - TSS region transcription start site region 117964
Ighm 12 113418826 to 113422730 3904 - gene segment immunoglobulin heavy constant mu
D12Mit8 12 113419742 to 113419913 171 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 8
Lvrq10 12 113419913 to 80909934 -32509979 QTL liver weight QTL 10
W6q10 12 113419913 to 80909934 -32509979 QTL weight 6 weeks QTL 10
Tailaq1 12 113419913 to 80909934 -32509979 QTL tail length adjusted QTL 1
Egq10 12 113419913 to 80909934 -32509979 QTL early growth QTL 10
Tssr117965 12 113419994 to 113420006 12 - TSS region transcription start site region 117965
Tssr117966 12 113421115 to 113421132 17 - TSS region transcription start site region 117966
Tssr117967 12 113421159 to 113421174 15 - TSS region transcription start site region 117967
Tssr117968 12 113421188 to 113421199 11 - TSS region transcription start site region 117968
Tssr117969 12 113421422 to 113421441 19 - TSS region transcription start site region 117969
Tssr117970 12 113421469 to 113421492 23 - TSS region transcription start site region 117970
Tssr115499 12 113421605 to 113421617 12 + TSS region transcription start site region 115499
Tssr117971 12 113421632 to 113421692 60 - TSS region transcription start site region 117971
Tssr115500 12 113421641 to 113421661 20 + TSS region transcription start site region 115500
Tssr117972 12 113421998 to 113422012 14 - TSS region transcription start site region 117972
Tssr117973 12 113422034 to 113422043 9 - TSS region transcription start site region 117973
Tssr115501 12 113422040 to 113422075 35 + TSS region transcription start site region 115501
Tssr117974 12 113422067 to 113422118 51 - TSS region transcription start site region 117974
Tssr115502 12 113422082 to 113422101 19 + TSS region transcription start site region 115502
Tssr117975 12 113422142 to 113422171 29 - TSS region transcription start site region 117975
Tssr117976 12 113422201 to 113422229 28 - TSS region transcription start site region 117976
Tssr117977 12 113422235 to 113422271 36 - TSS region transcription start site region 117977
Tssr117978 12 113422386 to 113422414 28 - TSS region transcription start site region 117978
Tssr117979 12 113422511 to 113422518 7 - TSS region transcription start site region 117979
Tssr115503 12 113422529 to 113422542 13 + TSS region transcription start site region 115503
Tssr117980 12 113422532 to 113422548 16 - TSS region transcription start site region 117980
Tssr117981 12 113422631 to 113422641 10 - TSS region transcription start site region 117981
Tssr117982 12 113422652 to 113422661 9 - TSS region transcription start site region 117982