Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:112880658-113120695

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D12Mit196 12 112891697 to 112891809 112 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 196
Jag2 12 112907803 to 112929517 21714 - protein coding gene jagged 2
Cpgi5191 12 112913228 to 112913617 389 CpG island CpG island 5191
Tssr3962 12 112914587 to 112914596 9 - TSS region transcription start site region 3962
Tssr117918 12 112917626 to 112917638 12 - TSS region transcription start site region 117918
Tssr117919 12 112917639 to 112917647 8 - TSS region transcription start site region 117919
Mir6941 12 112920483 to 112920541 58 - miRNA gene microRNA 6941
Cpgi5192 12 112928150 to 112930391 2241 CpG island CpG island 5192
Tssr117920 12 112929415 to 112929419 4 - TSS region transcription start site region 117920
Tssr117921 12 112929762 to 112929778 16 - TSS region transcription start site region 117921
Tssr117922 12 112929794 to 112929824 30 - TSS region transcription start site region 117922
Nudt14 12 112934291 to 112942124 7833 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 14
Cpgi5193 12 112941577 to 112942414 837 CpG island CpG island 5193
Tssr117923 12 112942090 to 112942097 7 - TSS region transcription start site region 117923
Tssr117924 12 112942102 to 112942150 48 - TSS region transcription start site region 117924
Gm26583 12 112946363 to 112950512 4149 - lincRNA gene predicted gene, 26583
Cpgi5194 12 112949763 to 112951015 1252 CpG island CpG island 5194
Tssr117925 12 112951577 to 112951582 5 - TSS region transcription start site region 117925
6530406A20Rik 12 112955546 to 112958397 2851 unclassified gene RIKEN cDNA 6530406A20 gene
Tssr117926 12 112959508 to 112959528 20 - TSS region transcription start site region 117926
Tssr117927 12 112959530 to 112959549 19 - TSS region transcription start site region 117927
Brf1 12 112960085 to 113000704 40619 - protein coding gene BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
Cpgi5195 12 112965834 to 112965991 157 CpG island CpG island 5195
Gm47541 12 112971745 to 112972145 400 - sense intronic lncRNA gene predicted gene, 47541
Cpgi5196 12 112976249 to 112977518 1269 CpG island CpG island 5196
Tssr115449 12 112976471 to 112976552 81 + TSS region transcription start site region 115449
Btbd6 12 112976482 to 112978945 2463 + protein coding gene BTB (POZ) domain containing 6
Tssr115450 12 112976745 to 112976752 7 + TSS region transcription start site region 115450
Cpgi5197 12 112999712 to 113001263 1551 CpG island CpG island 5197
9230104M06Rik 12 112999964 to 113001926 1962 + antisense lncRNA gene RIKEN cDNA 9230104M06 gene
Tssr117928 12 113000226 to 113000238 12 - TSS region transcription start site region 117928
Tssr117929 12 113000243 to 113000269 26 - TSS region transcription start site region 117929
Tssr117930 12 113000392 to 113000466 74 - TSS region transcription start site region 117930
Tssr117931 12 113000624 to 113000656 32 - TSS region transcription start site region 117931
Tssr117932 12 113000658 to 113000695 37 - TSS region transcription start site region 117932
Cpgi5198 12 113013784 to 113015219 1435 CpG island CpG island 5198
Tssr117933 12 113014224 to 113014263 39 - TSS region transcription start site region 117933
Tssr115451 12 113014385 to 113014470 85 + TSS region transcription start site region 115451
Tssr115452 12 113014502 to 113014513 11 + TSS region transcription start site region 115452
Pacs2 12 113014508 to 113074401 59893 + protein coding gene phosphofurin acidic cluster sorting protein 2
Tssr115453 12 113014515 to 113014539 24 + TSS region transcription start site region 115453
Tssr115454 12 113014546 to 113014557 11 + TSS region transcription start site region 115454
Tssr115455 12 113014559 to 113014568 9 + TSS region transcription start site region 115455
Tssr115456 12 113022365 to 113022384 19 + TSS region transcription start site region 115456
Tssr115457 12 113022436 to 113022440 4 + TSS region transcription start site region 115457
Tssr115458 12 113022529 to 113022540 11 + TSS region transcription start site region 115458
Tssr115459 12 113023370 to 113023389 19 + TSS region transcription start site region 115459
Cpgi5199 12 113046928 to 113047109 181 CpG island CpG island 5199
Tssr115460 12 113049966 to 113049975 9 + TSS region transcription start site region 115460
Tssr115461 12 113050501 to 113050513 12 + TSS region transcription start site region 115461
Tssr115462 12 113050530 to 113050539 9 + TSS region transcription start site region 115462
Tssr115463 12 113050545 to 113050556 11 + TSS region transcription start site region 115463
Tssr115464 12 113052397 to 113052410 13 + TSS region transcription start site region 115464
Tssr115465 12 113052562 to 113052586 24 + TSS region transcription start site region 115465
Gm44471 12 113063339 to 113063438 99 - miRNA gene predicted gene, 44471
Cpgi5200 12 113074063 to 113075019 956 CpG island CpG island 5200
Tssr115466 12 113074475 to 113074524 49 + TSS region transcription start site region 115466
Tex22 12 113074502 to 113088917 14415 + protein coding gene testis expressed gene 22
Tssr115467 12 113074764 to 113074775 11 + TSS region transcription start site region 115467
Tssr115468 12 113074777 to 113074801 24 + TSS region transcription start site region 115468
Tssr115469 12 113074805 to 113074818 13 + TSS region transcription start site region 115469
Tssr115470 12 113074819 to 113074822 3 + TSS region transcription start site region 115470
Cpgi5201 12 113097397 to 113099414 2017 CpG island CpG island 5201
Tssr115471 12 113098199 to 113098267 68 + TSS region transcription start site region 115471
Mta1 12 113098278 to 113137206 38928 + protein coding gene metastasis associated 1