Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:112659237-112779256

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Akt1 12 112653821 to 112674796 20975 - protein coding gene thymoma viral proto-oncogene 1
Mir6939 12 112659277 to 112659351 74 - miRNA gene microRNA 6939
Cpgi5172 12 112665503 to 112665831 328 CpG island CpG island 5172
Tssr117872 12 112668044 to 112668092 48 - TSS region transcription start site region 117872
Tssr117873 12 112668108 to 112668126 18 - TSS region transcription start site region 117873
Tssr117874 12 112671180 to 112671198 18 - TSS region transcription start site region 117874
Tssr117875 12 112671566 to 112671577 11 - TSS region transcription start site region 117875
Tssr117876 12 112672028 to 112672044 16 - TSS region transcription start site region 117876
Cpgi5173 12 112673262 to 112674909 1647 CpG island CpG island 5173
Tssr117877 12 112674016 to 112674027 11 - TSS region transcription start site region 117877
Tssr117878 12 112674075 to 112674086 11 - TSS region transcription start site region 117878
Tssr117879 12 112674193 to 112674275 82 - TSS region transcription start site region 117879
Gm30150 12 112674328 to 112675845 1517 + lncRNA gene predicted gene, 30150
Tssr117880 12 112674343 to 112674367 24 - TSS region transcription start site region 117880
Tssr117881 12 112674374 to 112674385 11 - TSS region transcription start site region 117881
Tssr115391 12 112674412 to 112674423 11 + TSS region transcription start site region 115391
Tssr117882 12 112674753 to 112674764 11 - TSS region transcription start site region 117882
Tssr117883 12 112674774 to 112674814 40 - TSS region transcription start site region 117883
Tssr117884 12 112674826 to 112674837 11 - TSS region transcription start site region 117884
Cpgi5174 12 112678103 to 112680506 2403 CpG island CpG island 5174
Tssr115392 12 112678782 to 112678798 16 + TSS region transcription start site region 115392
Tssr115393 12 112678803 to 112678823 20 + TSS region transcription start site region 115393
Zbtb42 12 112678828 to 112682747 3919 + protein coding gene zinc finger and BTB domain containing 42
Tssr115394 12 112679537 to 112679548 11 + TSS region transcription start site region 115394
Tssr115395 12 112679556 to 112679561 5 + TSS region transcription start site region 115395
Tssr115396 12 112679563 to 112679581 18 + TSS region transcription start site region 115396
Tssr115397 12 112679590 to 112679599 9 + TSS region transcription start site region 115397
Cpgi5175 12 112688508 to 112688695 187 CpG island CpG island 5175
Gm30238 12 112690986 to 112693588 2602 - lncRNA gene predicted gene, 30238
Cpgi5176 12 112693319 to 112693968 649 CpG island CpG island 5176
Gm30298 12 112693503 to 112703753 10250 + lncRNA gene predicted gene, 30298
Tssr117885 12 112693542 to 112693618 76 - TSS region transcription start site region 117885
Cpgi5177 12 112700637 to 112701040 403 CpG island CpG island 5177
Cpgi5178 12 112706954 to 112707397 443 CpG island CpG island 5178
Gm46382 12 112711949 to 112721584 9635 - protein coding gene predicted gene, 46382
Tssr115398 12 112719237 to 112719256 19 + TSS region transcription start site region 115398
Tssr115399 12 112721105 to 112721127 22 + TSS region transcription start site region 115399
Cpgi5179 12 112721260 to 112723161 1901 CpG island CpG island 5179
Tssr115400 12 112721504 to 112721530 26 + TSS region transcription start site region 115400
Cep170b 12 112721529 to 112746592 25063 + protein coding gene centrosomal protein 170B
Tssr117886 12 112721692 to 112721710 18 - TSS region transcription start site region 117886
Tssr117887 12 112721730 to 112721753 23 - TSS region transcription start site region 117887
Tssr117888 12 112721760 to 112721774 14 - TSS region transcription start site region 117888
Tssr115401 12 112721829 to 112721849 20 + TSS region transcription start site region 115401
Tssr115402 12 112722163 to 112722239 76 + TSS region transcription start site region 115402
Tssr115403 12 112722510 to 112722534 24 + TSS region transcription start site region 115403
Tssr115404 12 112722795 to 112722821 26 + TSS region transcription start site region 115404
Tssr115405 12 112731119 to 112731122 3 + TSS region transcription start site region 115405
Tssr115406 12 112731209 to 112731218 9 + TSS region transcription start site region 115406
Mir6940 12 112733322 to 112733391 69 + miRNA gene microRNA 6940
Cpgi5180 12 112736404 to 112736621 217 CpG island CpG island 5180
Cpgi5181 12 112737840 to 112738121 281 CpG island CpG island 5181
Gm5189 12 112751271 to 112751531 260 - pseudogene predicted gene 5189
Tssr115407 12 112760432 to 112760447 15 + TSS region transcription start site region 115407
Tssr115408 12 112760652 to 112760659 7 + TSS region transcription start site region 115408
Pld4 12 112760655 to 112768986 8331 + protein coding gene phospholipase D family, member 4
Tssr115409 12 112760683 to 112760717 34 + TSS region transcription start site region 115409
Tssr115410 12 112760719 to 112760742 23 + TSS region transcription start site region 115410
Tssr115411 12 112761630 to 112761644 14 + TSS region transcription start site region 115411
Tssr115412 12 112763448 to 112763480 32 + TSS region transcription start site region 115412
Tssr115413 12 112763998 to 112764050 52 + TSS region transcription start site region 115413
Tssr115414 12 112764494 to 112764514 20 + TSS region transcription start site region 115414
Tssr115415 12 112765033 to 112765050 17 + TSS region transcription start site region 115415
Tssr115416 12 112765061 to 112765082 21 + TSS region transcription start site region 115416
Tssr115417 12 112766705 to 112766724 19 + TSS region transcription start site region 115417
Tssr115418 12 112766742 to 112766753 11 + TSS region transcription start site region 115418
Tssr115419 12 112766776 to 112766795 19 + TSS region transcription start site region 115419
Tssr115420 12 112766796 to 112766807 11 + TSS region transcription start site region 115420
Tssr115421 12 112766843 to 112766854 11 + TSS region transcription start site region 115421
Tssr115422 12 112767484 to 112767514 30 + TSS region transcription start site region 115422
Tssr115423 12 112767515 to 112767543 28 + TSS region transcription start site region 115423
Tssr115424 12 112767553 to 112767580 27 + TSS region transcription start site region 115424
Tssr115425 12 112767595 to 112767612 17 + TSS region transcription start site region 115425
Tssr115426 12 112767801 to 112767821 20 + TSS region transcription start site region 115426
Tssr115427 12 112767824 to 112767852 28 + TSS region transcription start site region 115427
Tssr115428 12 112767876 to 112767892 16 + TSS region transcription start site region 115428
Tssr115429 12 112768483 to 112768503 20 + TSS region transcription start site region 115429
Tssr115430 12 112768619 to 112768691 72 + TSS region transcription start site region 115430
Ahnak2 12 112772194 to 112802657 30463 - protein coding gene AHNAK nucleoprotein 2