Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:112351469-114491492

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628 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scrd2 12 109969663 to 113361762 3392099 heritable phenotypic marker smallest common region of deletion 2
Tssr3958 12 112369109 to 112369110 1 - TSS region transcription start site region 3958
D12Mit1003 12 112385118 to 112385226 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1003
D12Mit1002 12 112385202 to 112385325 123 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1002
E330035G20Rik 12 112391526 to 112405812 14286 - lincRNA gene RIKEN cDNA E330035G20 gene
Tssr117863 12 112405724 to 112405733 9 - TSS region transcription start site region 117863
A730018C14Rik 12 112411023 to 112423198 12175 - lncRNA gene RIKEN cDNA A730018C14 gene
B020018J22Rik 12 112428284 to 112435338 7054 - lincRNA gene Riken cDNA B020018J22 gene
A530016L24Rik 12 112489448 to 112499927 10479 + protein coding gene RIKEN cDNA A530016L24 gene
Tssr115371 12 112489461 to 112489479 18 + TSS region transcription start site region 115371
Tssr115372 12 112489533 to 112489538 5 + TSS region transcription start site region 115372
Tssr115373 12 112490740 to 112490754 14 + TSS region transcription start site region 115373
Tmem179 12 112500184 to 112511160 10976 - protein coding gene transmembrane protein 179
Cpgi5168 12 112510620 to 112511604 984 CpG island CpG island 5168
Tssr117864 12 112511103 to 112511135 32 - TSS region transcription start site region 117864
Tssr117865 12 112511136 to 112511201 65 - TSS region transcription start site region 117865
Gm40584 12 112535662 to 112536991 1329 + lncRNA gene predicted gene, 40584
Tssr117866 12 112571202 to 112571247 45 - TSS region transcription start site region 117866
Tssr117867 12 112581177 to 112581203 26 - TSS region transcription start site region 117867
Cpgi5169 12 112588302 to 112589568 1266 CpG island CpG island 5169
Tssr115374 12 112588753 to 112588842 89 + TSS region transcription start site region 115374
Inf2 12 112588784 to 112615557 26773 + protein coding gene inverted formin, FH2 and WH2 domain containing
Tssr115375 12 112589225 to 112589266 41 + TSS region transcription start site region 115375
Gm30048 12 112592836 to 112597875 5039 - lncRNA gene predicted gene, 30048
Tssr115376 12 112599381 to 112599398 17 + TSS region transcription start site region 115376
Tssr115377 12 112604032 to 112604045 13 + TSS region transcription start site region 115377
Tssr115378 12 112604060 to 112604072 12 + TSS region transcription start site region 115378
Tssr115379 12 112604129 to 112604142 13 + TSS region transcription start site region 115379
Tssr115380 12 112604252 to 112604263 11 + TSS region transcription start site region 115380
Cpgi5170 12 112619594 to 112620697 1103 CpG island CpG island 5170
Tssr115381 12 112619921 to 112619947 26 + TSS region transcription start site region 115381
Tssr117868 12 112619936 to 112619973 37 - TSS region transcription start site region 117868
Tssr115382 12 112620030 to 112620056 26 + TSS region transcription start site region 115382
Adssl1 12 112620047 to 112641355 21308 + protein coding gene adenylosuccinate synthetase like 1
Tssr115383 12 112620067 to 112620084 17 + TSS region transcription start site region 115383
Tssr115384 12 112620092 to 112620095 3 + TSS region transcription start site region 115384
Tssr117869 12 112629017 to 112629062 45 - TSS region transcription start site region 117869
Tssr115385 12 112632551 to 112632574 23 + TSS region transcription start site region 115385
Tssr117870 12 112633084 to 112633095 11 - TSS region transcription start site region 117870
Tssr115386 12 112633959 to 112633992 33 + TSS region transcription start site region 115386
Gm30101 12 112642204 to 112644746 2542 - lncRNA gene predicted gene, 30101
Cpgi5171 12 112644257 to 112645743 1486 CpG island CpG island 5171
Tssr115387 12 112644636 to 112644684 48 + TSS region transcription start site region 115387
Siva1 12 112644828 to 112649152 4324 + protein coding gene SIVA1, apoptosis-inducing factor
Tssr115388 12 112644841 to 112644855 14 + TSS region transcription start site region 115388
Tssr115389 12 112644862 to 112644881 19 + TSS region transcription start site region 115389
Tssr115390 12 112644892 to 112644962 70 + TSS region transcription start site region 115390
Akt1 12 112653821 to 112674796 20975 - protein coding gene thymoma viral proto-oncogene 1
Tssr117871 12 112654729 to 112654750 21 - TSS region transcription start site region 117871
Mir6939 12 112659277 to 112659351 74 - miRNA gene microRNA 6939
Cpgi5172 12 112665503 to 112665831 328 CpG island CpG island 5172
Tssr117872 12 112668044 to 112668092 48 - TSS region transcription start site region 117872
Tssr117873 12 112668108 to 112668126 18 - TSS region transcription start site region 117873
Tssr117874 12 112671180 to 112671198 18 - TSS region transcription start site region 117874
Tssr117875 12 112671566 to 112671577 11 - TSS region transcription start site region 117875
Tssr117876 12 112672028 to 112672044 16 - TSS region transcription start site region 117876
Cpgi5173 12 112673262 to 112674909 1647 CpG island CpG island 5173
Tssr117877 12 112674016 to 112674027 11 - TSS region transcription start site region 117877
Tssr117878 12 112674075 to 112674086 11 - TSS region transcription start site region 117878
Tssr117879 12 112674193 to 112674275 82 - TSS region transcription start site region 117879
Gm30150 12 112674328 to 112675845 1517 + lncRNA gene predicted gene, 30150
Tssr117880 12 112674343 to 112674367 24 - TSS region transcription start site region 117880
Tssr117881 12 112674374 to 112674385 11 - TSS region transcription start site region 117881
Tssr115391 12 112674412 to 112674423 11 + TSS region transcription start site region 115391
Tssr117882 12 112674753 to 112674764 11 - TSS region transcription start site region 117882
Tssr117883 12 112674774 to 112674814 40 - TSS region transcription start site region 117883
Tssr117884 12 112674826 to 112674837 11 - TSS region transcription start site region 117884
Cpgi5174 12 112678103 to 112680506 2403 CpG island CpG island 5174
Tssr115392 12 112678782 to 112678798 16 + TSS region transcription start site region 115392
Tssr115393 12 112678803 to 112678823 20 + TSS region transcription start site region 115393
Zbtb42 12 112678828 to 112682747 3919 + protein coding gene zinc finger and BTB domain containing 42
Tssr115394 12 112679537 to 112679548 11 + TSS region transcription start site region 115394
Tssr115395 12 112679556 to 112679561 5 + TSS region transcription start site region 115395
Tssr115396 12 112679563 to 112679581 18 + TSS region transcription start site region 115396
Tssr115397 12 112679590 to 112679599 9 + TSS region transcription start site region 115397
Cpgi5175 12 112688508 to 112688695 187 CpG island CpG island 5175
Gm30238 12 112690986 to 112693588 2602 - lncRNA gene predicted gene, 30238
Cpgi5176 12 112693319 to 112693968 649 CpG island CpG island 5176
Gm30298 12 112693503 to 112703753 10250 + lncRNA gene predicted gene, 30298
Tssr117885 12 112693542 to 112693618 76 - TSS region transcription start site region 117885
Cpgi5177 12 112700637 to 112701040 403 CpG island CpG island 5177
Cpgi5178 12 112706954 to 112707397 443 CpG island CpG island 5178
Gm46382 12 112711949 to 112721584 9635 - protein coding gene predicted gene, 46382
Tssr115398 12 112719237 to 112719256 19 + TSS region transcription start site region 115398
Tssr115399 12 112721105 to 112721127 22 + TSS region transcription start site region 115399
Cpgi5179 12 112721260 to 112723161 1901 CpG island CpG island 5179
Tssr115400 12 112721504 to 112721530 26 + TSS region transcription start site region 115400
Cep170b 12 112721529 to 112746592 25063 + protein coding gene centrosomal protein 170B
Tssr117886 12 112721692 to 112721710 18 - TSS region transcription start site region 117886
Tssr117887 12 112721730 to 112721753 23 - TSS region transcription start site region 117887
Tssr117888 12 112721760 to 112721774 14 - TSS region transcription start site region 117888
Tssr115401 12 112721829 to 112721849 20 + TSS region transcription start site region 115401
Tssr115402 12 112722163 to 112722239 76 + TSS region transcription start site region 115402
Tssr115403 12 112722510 to 112722534 24 + TSS region transcription start site region 115403
Tssr115404 12 112722795 to 112722821 26 + TSS region transcription start site region 115404
Tssr115405 12 112731119 to 112731122 3 + TSS region transcription start site region 115405
Tssr115406 12 112731209 to 112731218 9 + TSS region transcription start site region 115406
Mir6940 12 112733322 to 112733391 69 + miRNA gene microRNA 6940
Cpgi5180 12 112736404 to 112736621 217 CpG island CpG island 5180
Cpgi5181 12 112737840 to 112738121 281 CpG island CpG island 5181
Gm5189 12 112751271 to 112751531 260 - pseudogene predicted gene 5189
Tssr115407 12 112760432 to 112760447 15 + TSS region transcription start site region 115407
Tssr115408 12 112760652 to 112760659 7 + TSS region transcription start site region 115408
Pld4 12 112760655 to 112768986 8331 + protein coding gene phospholipase D family, member 4
Tssr115409 12 112760683 to 112760717 34 + TSS region transcription start site region 115409
Tssr115410 12 112760719 to 112760742 23 + TSS region transcription start site region 115410
Tssr115411 12 112761630 to 112761644 14 + TSS region transcription start site region 115411
Tssr115412 12 112763448 to 112763480 32 + TSS region transcription start site region 115412
Tssr115413 12 112763998 to 112764050 52 + TSS region transcription start site region 115413
Tssr115414 12 112764494 to 112764514 20 + TSS region transcription start site region 115414
Tssr115415 12 112765033 to 112765050 17 + TSS region transcription start site region 115415
Tssr115416 12 112765061 to 112765082 21 + TSS region transcription start site region 115416
Tssr115417 12 112766705 to 112766724 19 + TSS region transcription start site region 115417
Tssr115418 12 112766742 to 112766753 11 + TSS region transcription start site region 115418
Tssr115419 12 112766776 to 112766795 19 + TSS region transcription start site region 115419
Tssr115420 12 112766796 to 112766807 11 + TSS region transcription start site region 115420
Tssr115421 12 112766843 to 112766854 11 + TSS region transcription start site region 115421
Tssr115422 12 112767484 to 112767514 30 + TSS region transcription start site region 115422
Tssr115423 12 112767515 to 112767543 28 + TSS region transcription start site region 115423
Tssr115424 12 112767553 to 112767580 27 + TSS region transcription start site region 115424
Tssr115425 12 112767595 to 112767612 17 + TSS region transcription start site region 115425
Tssr115426 12 112767801 to 112767821 20 + TSS region transcription start site region 115426
Tssr115427 12 112767824 to 112767852 28 + TSS region transcription start site region 115427
Tssr115428 12 112767876 to 112767892 16 + TSS region transcription start site region 115428
Tssr115429 12 112768483 to 112768503 20 + TSS region transcription start site region 115429
Tssr115430 12 112768619 to 112768691 72 + TSS region transcription start site region 115430
Ahnak2 12 112772194 to 112802657 30463 - protein coding gene AHNAK nucleoprotein 2
Tssr115431 12 112785071 to 112785094 23 + TSS region transcription start site region 115431
Tssr117889 12 112785111 to 112785122 11 - TSS region transcription start site region 117889
Tssr117890 12 112785154 to 112785170 16 - TSS region transcription start site region 117890
Tssr117891 12 112785173 to 112785210 37 - TSS region transcription start site region 117891
Tssr117892 12 112785217 to 112785235 18 - TSS region transcription start site region 117892
Tssr117893 12 112785246 to 112785276 30 - TSS region transcription start site region 117893
Tssr117894 12 112785281 to 112785312 31 - TSS region transcription start site region 117894
Tssr117895 12 112785366 to 112785389 23 - TSS region transcription start site region 117895
Tssr117896 12 112785419 to 112785449 30 - TSS region transcription start site region 117896
Tssr117897 12 112785483 to 112785495 12 - TSS region transcription start site region 117897
Tssr117898 12 112785561 to 112785580 19 - TSS region transcription start site region 117898
Tssr117899 12 112785583 to 112785599 16 - TSS region transcription start site region 117899
Tssr117900 12 112785743 to 112785763 20 - TSS region transcription start site region 117900
Tssr117901 12 112785884 to 112785895 11 - TSS region transcription start site region 117901
Tssr117902 12 112786211 to 112786237 26 - TSS region transcription start site region 117902
Tssr115432 12 112794275 to 112794289 14 + TSS region transcription start site region 115432
Tssr117903 12 112795686 to 112795754 68 - TSS region transcription start site region 117903
Tssr117904 12 112795781 to 112795794 13 - TSS region transcription start site region 117904
Tssr3959 12 112795807 to 112795835 28 - TSS region transcription start site region 3959
Tssr117905 12 112795930 to 112795961 31 - TSS region transcription start site region 117905
Tssr115433 12 112796014 to 112796036 22 + TSS region transcription start site region 115433
Tssr115434 12 112796037 to 112796081 44 + TSS region transcription start site region 115434
Tssr117906 12 112797085 to 112797134 49 - TSS region transcription start site region 117906
Tssr117907 12 112797646 to 112797657 11 - TSS region transcription start site region 117907
Tssr117908 12 112797721 to 112797742 21 - TSS region transcription start site region 117908
Cpgi5182 12 112802043 to 112802946 903 CpG island CpG island 5182
Tssr117909 12 112802646 to 112802665 19 - TSS region transcription start site region 117909
Tssr117910 12 112803584 to 112803585 1 - TSS region transcription start site region 117910
Cpgi5183 12 112804108 to 112804292 184 CpG island CpG island 5183
Cpgi5184 12 112808386 to 112809725 1339 CpG island CpG island 5184
Tssr115435 12 112808914 to 112809002 88 + TSS region transcription start site region 115435
Clba1 12 112808975 to 112816245 7270 + protein coding gene clathrin binding box of aftiphilin containing 1
Tssr115436 12 112809271 to 112809285 14 + TSS region transcription start site region 115436
Tssr115437 12 112809289 to 112809329 40 + TSS region transcription start site region 115437
Tssr115438 12 112809333 to 112809364 31 + TSS region transcription start site region 115438
Gm40588 12 112816211 to 112817687 1476 - lncRNA gene predicted gene, 40588
Cdca4 12 112820229 to 112829423 9194 - protein coding gene cell division cycle associated 4
Cpgi5185 12 112828673 to 112830159 1486 CpG island CpG island 5185
Tssr117911 12 112829025 to 112829106 81 - TSS region transcription start site region 117911
Tssr115439 12 112829148 to 112829161 13 + TSS region transcription start site region 115439
Tssr117912 12 112829351 to 112829426 75 - TSS region transcription start site region 117912
Tssr3960 12 112829456 to 112829479 23 - TSS region transcription start site region 3960
Tssr117913 12 112829486 to 112829504 18 - TSS region transcription start site region 117913
Tssr115440 12 112829660 to 112829685 25 + TSS region transcription start site region 115440
Tssr115441 12 112831018 to 112831023 5 + TSS region transcription start site region 115441
Cpgi5186 12 112840407 to 112840685 278 CpG island CpG island 5186
Gpr132 12 112850873 to 112868228 17355 - protein coding gene G protein-coupled receptor 132
Tssr3961 12 112853137 to 112853148 11 - TSS region transcription start site region 3961
Tssr115442 12 112855418 to 112855427 9 + TSS region transcription start site region 115442
Gm30461 12 112859982 to 112867649 7667 + lncRNA gene predicted gene, 30461
Tssr115443 12 112860138 to 112860187 49 + TSS region transcription start site region 115443
Tssr117914 12 112860237 to 112860245 8 - TSS region transcription start site region 117914
Tssr117915 12 112860886 to 112860967 81 - TSS region transcription start site region 117915
Tssr117916 12 112860972 to 112860981 9 - TSS region transcription start site region 117916
Tssr115444 12 112861072 to 112861086 14 + TSS region transcription start site region 115444
Tssr115445 12 112861089 to 112861101 12 + TSS region transcription start site region 115445
Tssr115446 12 112861106 to 112861115 9 + TSS region transcription start site region 115446
Tssr115447 12 112862166 to 112862173 7 + TSS region transcription start site region 115447
Tssr115448 12 112866702 to 112866717 15 + TSS region transcription start site region 115448
Tssr117917 12 112868241 to 112868259 18 - TSS region transcription start site region 117917
Cpgi5187 12 112870524 to 112871057 533 CpG island CpG island 5187
Gm47474 12 112873117 to 112873531 414 - pseudogene predicted gene, 47474
Cpgi5188 12 112874239 to 112874560 321 CpG island CpG island 5188
1700127F24Rik 12 112875211 to 112875814 603 - lincRNA gene RIKEN cDNA 1700127F24 gene
Cpgi5189 12 112876371 to 112876681 310 CpG island CpG island 5189
Cpgi5190 12 112877152 to 112878327 1175 CpG island CpG island 5190
D12Mit196 12 112891697 to 112891809 112 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 196
Jag2 12 112907803 to 112929517 21714 - protein coding gene jagged 2
Cpgi5191 12 112913228 to 112913617 389 CpG island CpG island 5191
Tssr3962 12 112914587 to 112914596 9 - TSS region transcription start site region 3962
Tssr117918 12 112917626 to 112917638 12 - TSS region transcription start site region 117918
Tssr117919 12 112917639 to 112917647 8 - TSS region transcription start site region 117919
Mir6941 12 112920483 to 112920541 58 - miRNA gene microRNA 6941