Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:112018602-112504837

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tdrd9 12 111971559 to 112068854 97295 + protein coding gene tudor domain containing 9
Aspg 12 112106679 to 112127559 20880 + protein coding gene asparaginase
Tssr115362 12 112106692 to 112106705 13 + TSS region transcription start site region 115362
Tssr115363 12 112106710 to 112106719 9 + TSS region transcription start site region 115363
Tssr115364 12 112106791 to 112106810 19 + TSS region transcription start site region 115364
Tssr115365 12 112106841 to 112106887 46 + TSS region transcription start site region 115365
Cpgi5162 12 112106852 to 112107043 191 CpG island CpG island 5162
Tssr115366 12 112107292 to 112107302 10 + TSS region transcription start site region 115366
Mir3073a 12 112109238 to 112109322 84 + miRNA gene microRNA 3073a
Mir3073b 12 112109250 to 112109309 59 - miRNA gene microRNA 3073b
Tssr115367 12 112110612 to 112110619 7 + TSS region transcription start site region 115367
Cpgi5163 12 112129950 to 112131386 1436 CpG island CpG island 5163
Tssr115368 12 112130779 to 112130785 6 + TSS region transcription start site region 115368
Mir203 12 112130880 to 112130955 75 + miRNA gene microRNA 203
Cpgi5164 12 112143229 to 112147265 4036 CpG island CpG island 5164
Tssr115369 12 112146187 to 112146222 35 + TSS region transcription start site region 115369
Kif26a 12 112146208 to 112181747 35539 + protein coding gene kinesin family member 26A
Tssr115370 12 112146227 to 112146257 30 + TSS region transcription start site region 115370
Cpgi5165 12 112161557 to 112161832 275 CpG island CpG island 5165
Cpgi5166 12 112177873 to 112178056 183 CpG island CpG island 5166
Cpgi5167 12 112195173 to 112195641 468 CpG island CpG island 5167
Gm20368 12 112204701 to 112205153 452 - pseudogene predicted gene, 20368
Gm36894 12 112218602 to 112304837 86235 + lncRNA gene predicted gene, 36894
Gm29890 12 112327809 to 112344784 16975 - lncRNA gene predicted gene, 29890
Gm38123 12 112347289 to 112350067 2778 - unclassified gene predicted gene, 38123
Tssr3958 12 112369109 to 112369110 1 - TSS region transcription start site region 3958
D12Mit1003 12 112385118 to 112385226 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1003
D12Mit1002 12 112385202 to 112385325 123 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1002
E330035G20Rik 12 112391526 to 112405812 14286 - lincRNA gene RIKEN cDNA E330035G20 gene
Tssr117863 12 112405724 to 112405733 9 - TSS region transcription start site region 117863
A730018C14Rik 12 112411023 to 112423198 12175 - lncRNA gene RIKEN cDNA A730018C14 gene
B020018J22Rik 12 112428284 to 112435338 7054 - lincRNA gene Riken cDNA B020018J22 gene
A530016L24Rik 12 112489448 to 112499927 10479 + protein coding gene RIKEN cDNA A530016L24 gene
Tssr115371 12 112489461 to 112489479 18 + TSS region transcription start site region 115371
Tssr115372 12 112489533 to 112489538 5 + TSS region transcription start site region 115372
Tssr115373 12 112490740 to 112490754 14 + TSS region transcription start site region 115373
Tmem179 12 112500184 to 112511160 10976 - protein coding gene transmembrane protein 179