Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:111546439-116846875

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1014 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plyid 12 109217459 to 115921502 6704043 QTL Polymeric IgA dominance
Scrd2 12 109969663 to 113361762 3392099 heritable phenotypic marker smallest common region of deletion 2
Eif5 12 111538101 to 111546753 8652 + protein coding gene eukaryotic translation initiation factor 5
Tssr115332 12 111548062 to 111548066 4 + TSS region transcription start site region 115332
Gm48248 12 111558778 to 111559010 232 - pseudogene predicted gene, 48248
2810029C07Rik 12 111572317 to 111574402 2085 - bidirectional promoter lncRNA gene RIKEN cDNA 2810029C07 gene
Cpgi5151 12 111574057 to 111575771 1714 CpG island CpG island 5151
Tssr117830 12 111574309 to 111574342 33 - TSS region transcription start site region 117830
Tssr117831 12 111574384 to 111574405 21 - TSS region transcription start site region 117831
Tssr115333 12 111574491 to 111574542 51 + TSS region transcription start site region 115333
Mark3 12 111574523 to 111656221 81698 + protein coding gene MAP/microtubule affinity regulating kinase 3
Tssr115334 12 111583624 to 111583629 5 + TSS region transcription start site region 115334
Tssr115335 12 111583640 to 111583654 14 + TSS region transcription start site region 115335
Tssr115336 12 111583662 to 111583665 3 + TSS region transcription start site region 115336
Tssr115337 12 111592649 to 111592672 23 + TSS region transcription start site region 115337
Gm48286 12 111616870 to 111637388 20518 + sense overlapping lncRNA gene predicted gene, 48286
Ckb 12 111669361 to 111672338 2977 - protein coding gene creatine kinase, brain
Cpgi5152 12 111669524 to 111669826 302 CpG island CpG island 5152
Tssr117832 12 111670485 to 111670506 21 - TSS region transcription start site region 117832
Cpgi5153 12 111670514 to 111672860 2346 CpG island CpG island 5153
Tssr117833 12 111670626 to 111670637 11 - TSS region transcription start site region 117833
Tssr117834 12 111670736 to 111670745 9 - TSS region transcription start site region 117834
Tssr117835 12 111671268 to 111671287 19 - TSS region transcription start site region 117835
Tssr117836 12 111671322 to 111671332 10 - TSS region transcription start site region 117836
Tssr117837 12 111671481 to 111671492 11 - TSS region transcription start site region 117837
Tssr117838 12 111671536 to 111671591 55 - TSS region transcription start site region 117838
Tssr117839 12 111672083 to 111672089 6 - TSS region transcription start site region 117839
Tssr117840 12 111672290 to 111672306 16 - TSS region transcription start site region 117840
Cpgi5154 12 111677613 to 111678966 1353 CpG island CpG island 5154
Tssr115338 12 111678094 to 111678140 46 + TSS region transcription start site region 115338
Trmt61a 12 111678105 to 111683902 5797 + protein coding gene tRNA methyltransferase 61A
Tssr115339 12 111678146 to 111678160 14 + TSS region transcription start site region 115339
Tssr115340 12 111698615 to 111698624 9 + TSS region transcription start site region 115340
Tssr115341 12 111698633 to 111698640 7 + TSS region transcription start site region 115341
Tssr115342 12 111698641 to 111698649 8 + TSS region transcription start site region 115342
Gm36635 12 111703082 to 111705550 2468 + lincRNA gene predicted gene, 36635
Bag5 12 111709488 to 111713257 3769 - protein coding gene BCL2-associated athanogene 5
Tssr115343 12 111712423 to 111712429 6 + TSS region transcription start site region 115343
Cpgi5155 12 111712490 to 111713750 1260 CpG island CpG island 5155
Tssr117841 12 111712879 to 111712904 25 - TSS region transcription start site region 117841
Tssr117842 12 111712909 to 111712932 23 - TSS region transcription start site region 117842
Tssr117843 12 111712936 to 111712939 3 - TSS region transcription start site region 117843
Tssr117844 12 111712946 to 111712958 12 - TSS region transcription start site region 117844
Tssr115344 12 111712973 to 111712985 12 + TSS region transcription start site region 115344
Tssr115345 12 111713001 to 111713031 30 + TSS region transcription start site region 115345
Tssr117845 12 111713058 to 111713116 58 - TSS region transcription start site region 117845
Tssr117846 12 111713185 to 111713218 33 - TSS region transcription start site region 117846
Tssr115346 12 111713255 to 111713303 48 + TSS region transcription start site region 115346
Apopt1 12 111713269 to 111755055 41786 + protein coding gene apoptogenic, mitochondrial 1
Tssr115347 12 111713313 to 111713320 7 + TSS region transcription start site region 115347
Tssr3955 12 111713325 to 111713340 15 + TSS region transcription start site region 3955
Gm15995 12 111726392 to 111727127 735 + unclassified non-coding RNA gene predicted gene 15995
Gm15996 12 111730094 to 111731831 1737 - antisense lncRNA gene predicted gene 15996
Cpgi5156 12 111732486 to 111732851 365 CpG island CpG island 5156
Tssr115348 12 111737680 to 111737683 3 + TSS region transcription start site region 115348
Cpgi5157 12 111758353 to 111759810 1457 CpG island CpG island 5157
Tssr115349 12 111758848 to 111758915 67 + TSS region transcription start site region 115349
Klc1 12 111758849 to 111807844 48995 + protein coding gene kinesin light chain 1
Tssr115350 12 111758923 to 111758939 16 + TSS region transcription start site region 115350
Tssr115351 12 111781753 to 111781770 17 + TSS region transcription start site region 115351
Tssr115352 12 111791109 to 111791174 65 + TSS region transcription start site region 115352
Tssr115353 12 111794753 to 111794764 11 + TSS region transcription start site region 115353
Xrcc3 12 111803192 to 111813873 10681 - protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 3
Tssr117847 12 111804135 to 111804161 26 - TSS region transcription start site region 117847
Tssr117848 12 111809940 to 111809974 34 - TSS region transcription start site region 117848
Cpgi5158 12 111813441 to 111814971 1530 CpG island CpG island 5158
Tssr117849 12 111813834 to 111813858 24 - TSS region transcription start site region 117849
Zfyve21 12 111814169 to 111828388 14219 + protein coding gene zinc finger, FYVE domain containing 21
Tssr115354 12 111814178 to 111814245 67 + TSS region transcription start site region 115354
Tssr115355 12 111814268 to 111814279 11 + TSS region transcription start site region 115355
Ppp1r13b 12 111828458 to 111908105 79647 - protein coding gene protein phosphatase 1, regulatory subunit 13B
Gm19195 12 111860626 to 111861136 510 - pseudogene predicted gene, 19195
Tssr117850 12 111875655 to 111875659 4 - TSS region transcription start site region 117850
Cpgi5159 12 111907279 to 111909006 1727 CpG island CpG island 5159
Tssr117851 12 111907998 to 111908017 19 - TSS region transcription start site region 117851
Tssr117852 12 111908055 to 111908125 70 - TSS region transcription start site region 117852
Tssr117853 12 111909130 to 111909137 7 - TSS region transcription start site region 117853
Tssr117854 12 111909166 to 111909182 16 - TSS region transcription start site region 117854
Gm40898 12 111920189 to 111923501 3312 + lncRNA gene predicted gene, 40898
Tssr3956 12 111920342 to 111920381 39 + TSS region transcription start site region 3956
Gm3565 12 111930429 to 111931037 608 - pseudogene predicted gene 3565
5033406O09Rik 12 111941991 to 111944482 2491 - lincRNA gene RIKEN cDNA 5033406O09 gene
Tssr115356 12 111944603 to 111944615 12 + TSS region transcription start site region 115356
Tssr115357 12 111944634 to 111944646 12 + TSS region transcription start site region 115357
Gm36757 12 111950517 to 111954152 3635 + lincRNA gene predicted gene, 36757
Atp5mpl 12 111961375 to 111966977 5602 - protein coding gene ATP synthase membrane subunit 6.8PL
Cpgi5160 12 111966582 to 111967146 564 CpG island CpG island 5160
Tssr117855 12 111966668 to 111966698 30 - TSS region transcription start site region 117855
Tssr117856 12 111966728 to 111966775 47 - TSS region transcription start site region 117856
Tssr115358 12 111966785 to 111966791 6 + TSS region transcription start site region 115358
Tssr115359 12 111966794 to 111966830 36 + TSS region transcription start site region 115359
Tssr117857 12 111966954 to 111967017 63 - TSS region transcription start site region 117857
Tssr3957 12 111967028 to 111967034 6 - TSS region transcription start site region 3957
Cpgi5161 12 111971536 to 111971831 295 CpG island CpG island 5161
Tssr115360 12 111971545 to 111971598 53 + TSS region transcription start site region 115360
Tdrd9 12 111971559 to 112068854 97295 + protein coding gene tudor domain containing 9
Tssr115361 12 111971608 to 111971619 11 + TSS region transcription start site region 115361
Rd3l 12 111979191 to 111981128 1937 - protein coding gene retinal degeneration 3-like
Tssr117858 12 111980124 to 111980166 42 - TSS region transcription start site region 117858
Tssr117859 12 111981053 to 111981064 11 - TSS region transcription start site region 117859
Tssr117860 12 111981109 to 111981114 5 - TSS region transcription start site region 117860
Tssr117861 12 111981118 to 111981129 11 - TSS region transcription start site region 117861
Tssr117862 12 111981136 to 111981151 15 - TSS region transcription start site region 117862
Gm46381 12 112015170 to 112015812 642 - lncRNA gene predicted gene, 46381
Aspg 12 112106679 to 112127559 20880 + protein coding gene asparaginase
Tssr115362 12 112106692 to 112106705 13 + TSS region transcription start site region 115362
Tssr115363 12 112106710 to 112106719 9 + TSS region transcription start site region 115363
Tssr115364 12 112106791 to 112106810 19 + TSS region transcription start site region 115364
Tssr115365 12 112106841 to 112106887 46 + TSS region transcription start site region 115365
Cpgi5162 12 112106852 to 112107043 191 CpG island CpG island 5162
Tssr115366 12 112107292 to 112107302 10 + TSS region transcription start site region 115366
Mir3073a 12 112109238 to 112109322 84 + miRNA gene microRNA 3073a
Mir3073b 12 112109250 to 112109309 59 - miRNA gene microRNA 3073b
Tssr115367 12 112110612 to 112110619 7 + TSS region transcription start site region 115367
Cpgi5163 12 112129950 to 112131386 1436 CpG island CpG island 5163
Tssr115368 12 112130779 to 112130785 6 + TSS region transcription start site region 115368
Mir203 12 112130880 to 112130955 75 + miRNA gene microRNA 203
Cpgi5164 12 112143229 to 112147265 4036 CpG island CpG island 5164
Tssr115369 12 112146187 to 112146222 35 + TSS region transcription start site region 115369
Kif26a 12 112146208 to 112181747 35539 + protein coding gene kinesin family member 26A
Tssr115370 12 112146227 to 112146257 30 + TSS region transcription start site region 115370
Cpgi5165 12 112161557 to 112161832 275 CpG island CpG island 5165
Cpgi5166 12 112177873 to 112178056 183 CpG island CpG island 5166
Cpgi5167 12 112195173 to 112195641 468 CpG island CpG island 5167
Gm20368 12 112204701 to 112205153 452 - pseudogene predicted gene, 20368
Gm36894 12 112218602 to 112304837 86235 + lncRNA gene predicted gene, 36894
Gm29890 12 112327809 to 112344784 16975 - lncRNA gene predicted gene, 29890
Gm38123 12 112347289 to 112350067 2778 - unclassified gene predicted gene, 38123
Tssr3958 12 112369109 to 112369110 1 - TSS region transcription start site region 3958
D12Mit1003 12 112385118 to 112385226 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1003
D12Mit1002 12 112385202 to 112385325 123 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1002
E330035G20Rik 12 112391526 to 112405812 14286 - lincRNA gene RIKEN cDNA E330035G20 gene
Tssr117863 12 112405724 to 112405733 9 - TSS region transcription start site region 117863
A730018C14Rik 12 112411023 to 112423198 12175 - lncRNA gene RIKEN cDNA A730018C14 gene
B020018J22Rik 12 112428284 to 112435338 7054 - lincRNA gene Riken cDNA B020018J22 gene
A530016L24Rik 12 112489448 to 112499927 10479 + protein coding gene RIKEN cDNA A530016L24 gene
Tssr115371 12 112489461 to 112489479 18 + TSS region transcription start site region 115371
Tssr115372 12 112489533 to 112489538 5 + TSS region transcription start site region 115372
Tssr115373 12 112490740 to 112490754 14 + TSS region transcription start site region 115373
Tmem179 12 112500184 to 112511160 10976 - protein coding gene transmembrane protein 179
Cpgi5168 12 112510620 to 112511604 984 CpG island CpG island 5168
Tssr117864 12 112511103 to 112511135 32 - TSS region transcription start site region 117864
Tssr117865 12 112511136 to 112511201 65 - TSS region transcription start site region 117865
Gm40584 12 112535662 to 112536991 1329 + lncRNA gene predicted gene, 40584
Tssr117866 12 112571202 to 112571247 45 - TSS region transcription start site region 117866
Tssr117867 12 112581177 to 112581203 26 - TSS region transcription start site region 117867
Cpgi5169 12 112588302 to 112589568 1266 CpG island CpG island 5169
Tssr115374 12 112588753 to 112588842 89 + TSS region transcription start site region 115374
Inf2 12 112588784 to 112615557 26773 + protein coding gene inverted formin, FH2 and WH2 domain containing
Tssr115375 12 112589225 to 112589266 41 + TSS region transcription start site region 115375
Gm30048 12 112592836 to 112597875 5039 - lncRNA gene predicted gene, 30048
Tssr115376 12 112599381 to 112599398 17 + TSS region transcription start site region 115376
Tssr115377 12 112604032 to 112604045 13 + TSS region transcription start site region 115377
Tssr115378 12 112604060 to 112604072 12 + TSS region transcription start site region 115378
Tssr115379 12 112604129 to 112604142 13 + TSS region transcription start site region 115379
Tssr115380 12 112604252 to 112604263 11 + TSS region transcription start site region 115380
Cpgi5170 12 112619594 to 112620697 1103 CpG island CpG island 5170
Tssr115381 12 112619921 to 112619947 26 + TSS region transcription start site region 115381
Tssr117868 12 112619936 to 112619973 37 - TSS region transcription start site region 117868
Tssr115382 12 112620030 to 112620056 26 + TSS region transcription start site region 115382
Adssl1 12 112620047 to 112641355 21308 + protein coding gene adenylosuccinate synthetase like 1
Tssr115383 12 112620067 to 112620084 17 + TSS region transcription start site region 115383
Tssr115384 12 112620092 to 112620095 3 + TSS region transcription start site region 115384
Tssr117869 12 112629017 to 112629062 45 - TSS region transcription start site region 117869
Tssr115385 12 112632551 to 112632574 23 + TSS region transcription start site region 115385
Tssr117870 12 112633084 to 112633095 11 - TSS region transcription start site region 117870
Tssr115386 12 112633959 to 112633992 33 + TSS region transcription start site region 115386
Gm30101 12 112642204 to 112644746 2542 - lncRNA gene predicted gene, 30101
Cpgi5171 12 112644257 to 112645743 1486 CpG island CpG island 5171
Tssr115387 12 112644636 to 112644684 48 + TSS region transcription start site region 115387
Siva1 12 112644828 to 112649152 4324 + protein coding gene SIVA1, apoptosis-inducing factor
Tssr115388 12 112644841 to 112644855 14 + TSS region transcription start site region 115388
Tssr115389 12 112644862 to 112644881 19 + TSS region transcription start site region 115389
Tssr115390 12 112644892 to 112644962 70 + TSS region transcription start site region 115390
Akt1 12 112653821 to 112674796 20975 - protein coding gene thymoma viral proto-oncogene 1
Tssr117871 12 112654729 to 112654750 21 - TSS region transcription start site region 117871
Mir6939 12 112659277 to 112659351 74 - miRNA gene microRNA 6939
Cpgi5172 12 112665503 to 112665831 328 CpG island CpG island 5172
Tssr117872 12 112668044 to 112668092 48 - TSS region transcription start site region 117872
Tssr117873 12 112668108 to 112668126 18 - TSS region transcription start site region 117873
Tssr117874 12 112671180 to 112671198 18 - TSS region transcription start site region 117874
Tssr117875 12 112671566 to 112671577 11 - TSS region transcription start site region 117875
Tssr117876 12 112672028 to 112672044 16 - TSS region transcription start site region 117876
Cpgi5173 12 112673262 to 112674909 1647 CpG island CpG island 5173
Tssr117877 12 112674016 to 112674027 11 - TSS region transcription start site region 117877
Tssr117878 12 112674075 to 112674086 11 - TSS region transcription start site region 117878
Tssr117879 12 112674193 to 112674275 82 - TSS region transcription start site region 117879
Gm30150 12 112674328 to 112675845 1517 + lncRNA gene predicted gene, 30150
Tssr117880 12 112674343 to 112674367 24 - TSS region transcription start site region 117880
Tssr117881 12 112674374 to 112674385 11 - TSS region transcription start site region 117881
Tssr115391 12 112674412 to 112674423 11 + TSS region transcription start site region 115391
Tssr117882 12 112674753 to 112674764 11 - TSS region transcription start site region 117882
Tssr117883 12 112674774 to 112674814 40 - TSS region transcription start site region 117883
Tssr117884 12 112674826 to 112674837 11 - TSS region transcription start site region 117884
Cpgi5174 12 112678103 to 112680506 2403 CpG island CpG island 5174
Tssr115392 12 112678782 to 112678798 16 + TSS region transcription start site region 115392
Tssr115393 12 112678803 to 112678823 20 + TSS region transcription start site region 115393
Zbtb42 12 112678828 to 112682747 3919 + protein coding gene zinc finger and BTB domain containing 42
Tssr115394 12 112679537 to 112679548 11 + TSS region transcription start site region 115394
Tssr115395 12 112679556 to 112679561 5 + TSS region transcription start site region 115395