Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:111517317-111629402

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr115316 12 111535652 to 111535660 8 + TSS region transcription start site region 115316
Tssr115317 12 111536041 to 111536046 5 + TSS region transcription start site region 115317
Tssr115318 12 111536073 to 111536111 38 + TSS region transcription start site region 115318
Tssr115319 12 111537192 to 111537205 13 + TSS region transcription start site region 115319
Cpgi5150 12 111537447 to 111539371 1924 CpG island CpG island 5150
Tssr117828 12 111537917 to 111537956 39 - TSS region transcription start site region 117828
Eif5 12 111538101 to 111546753 8652 + protein coding gene eukaryotic translation initiation factor 5
Tssr115320 12 111538149 to 111538243 94 + TSS region transcription start site region 115320
Tssr115321 12 111538264 to 111538278 14 + TSS region transcription start site region 115321
Tssr115322 12 111538331 to 111538375 44 + TSS region transcription start site region 115322
Tssr115323 12 111538469 to 111538482 13 + TSS region transcription start site region 115323
Tssr117829 12 111538579 to 111538606 27 - TSS region transcription start site region 117829
Tssr115324 12 111538785 to 111538804 19 + TSS region transcription start site region 115324
Tssr115325 12 111538819 to 111538874 55 + TSS region transcription start site region 115325
Tssr115326 12 111539434 to 111539447 13 + TSS region transcription start site region 115326
Tssr115327 12 111540213 to 111540227 14 + TSS region transcription start site region 115327
Snora28 12 111540946 to 111541067 121 + snoRNA gene small nucleolar RNA, H/ACA box 28
Tssr115328 12 111542172 to 111542201 29 + TSS region transcription start site region 115328
Tssr115329 12 111543659 to 111543692 33 + TSS region transcription start site region 115329
Tssr115330 12 111544997 to 111545028 31 + TSS region transcription start site region 115330
Tssr115331 12 111545327 to 111545345 18 + TSS region transcription start site region 115331
Tssr115332 12 111548062 to 111548066 4 + TSS region transcription start site region 115332
Gm48248 12 111558778 to 111559010 232 - pseudogene predicted gene, 48248
2810029C07Rik 12 111572317 to 111574402 2085 - bidirectional promoter lncRNA gene RIKEN cDNA 2810029C07 gene
Cpgi5151 12 111574057 to 111575771 1714 CpG island CpG island 5151
Tssr117830 12 111574309 to 111574342 33 - TSS region transcription start site region 117830
Tssr117831 12 111574384 to 111574405 21 - TSS region transcription start site region 117831
Tssr115333 12 111574491 to 111574542 51 + TSS region transcription start site region 115333
Mark3 12 111574523 to 111656221 81698 + protein coding gene MAP/microtubule affinity regulating kinase 3
Tssr115334 12 111583624 to 111583629 5 + TSS region transcription start site region 115334
Tssr115335 12 111583640 to 111583654 14 + TSS region transcription start site region 115335
Tssr115336 12 111583662 to 111583665 3 + TSS region transcription start site region 115336
Tssr115337 12 111592649 to 111592672 23 + TSS region transcription start site region 115337
Gm48286 12 111616870 to 111637388 20518 + sense overlapping lncRNA gene predicted gene, 48286