Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:111443785-111633804

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tnfaip2 12 111442469 to 111455018 12549 + protein coding gene tumor necrosis factor, alpha-induced protein 2
Tssr115284 12 111445071 to 111445099 28 + TSS region transcription start site region 115284
Tssr117816 12 111445188 to 111445206 18 - TSS region transcription start site region 117816
Cpgi5147 12 111445217 to 111446275 1058 CpG island CpG island 5147
Tssr117817 12 111445653 to 111445675 22 - TSS region transcription start site region 117817
Tssr115285 12 111445965 to 111445997 32 + TSS region transcription start site region 115285
Tssr115286 12 111446001 to 111446018 17 + TSS region transcription start site region 115286
Tssr115287 12 111446021 to 111446036 15 + TSS region transcription start site region 115287
Tssr115288 12 111449539 to 111449565 26 + TSS region transcription start site region 115288
Tssr115289 12 111449624 to 111449651 27 + TSS region transcription start site region 115289
Tssr115290 12 111449838 to 111449853 15 + TSS region transcription start site region 115290
Tssr115291 12 111449889 to 111449894 5 + TSS region transcription start site region 115291
Tssr115292 12 111450513 to 111450523 10 + TSS region transcription start site region 115292
Tssr115293 12 111451855 to 111451877 22 + TSS region transcription start site region 115293
Tssr115294 12 111451979 to 111451988 9 + TSS region transcription start site region 115294
Tssr115295 12 111452064 to 111452083 19 + TSS region transcription start site region 115295
Tssr115296 12 111452093 to 111452104 11 + TSS region transcription start site region 115296
Tssr115297 12 111452106 to 111452127 21 + TSS region transcription start site region 115297
Tssr115298 12 111452135 to 111452209 74 + TSS region transcription start site region 115298
Tssr115299 12 111452210 to 111452245 35 + TSS region transcription start site region 115299
Tssr115300 12 111452246 to 111452262 16 + TSS region transcription start site region 115300
Tssr115301 12 111452302 to 111452328 26 + TSS region transcription start site region 115301
Tssr115302 12 111452337 to 111452353 16 + TSS region transcription start site region 115302
Tssr115303 12 111452445 to 111452486 41 + TSS region transcription start site region 115303
Tssr115304 12 111453748 to 111453758 10 + TSS region transcription start site region 115304
Tssr115305 12 111453899 to 111453911 12 + TSS region transcription start site region 115305
Tssr117818 12 111454141 to 111454160 19 - TSS region transcription start site region 117818
Tssr115306 12 111454219 to 111454230 11 + TSS region transcription start site region 115306
Tssr115307 12 111454245 to 111454277 32 + TSS region transcription start site region 115307
Tssr115308 12 111454285 to 111454297 12 + TSS region transcription start site region 115308
Tssr115309 12 111454304 to 111454326 22 + TSS region transcription start site region 115309
Tssr115310 12 111454372 to 111454398 26 + TSS region transcription start site region 115310
Tssr115311 12 111454411 to 111454423 12 + TSS region transcription start site region 115311
Tssr115312 12 111454430 to 111454441 11 + TSS region transcription start site region 115312
Tssr115313 12 111454443 to 111454461 18 + TSS region transcription start site region 115313
Tssr115314 12 111454469 to 111454481 12 + TSS region transcription start site region 115314
Tssr115315 12 111454664 to 111454675 11 + TSS region transcription start site region 115315
Tssr117819 12 111455008 to 111455017 9 - TSS region transcription start site region 117819
Tssr117820 12 111458643 to 111458654 11 - TSS region transcription start site region 117820
Gm266 12 111484609 to 111485823 1214 - protein coding gene predicted gene 266
Cpgi5148 12 111485016 to 111486431 1415 CpG island CpG island 5148
Tssr117821 12 111485773 to 111485804 31 - TSS region transcription start site region 117821
Tssr117822 12 111485808 to 111485826 18 - TSS region transcription start site region 117822
Tssr117823 12 111485976 to 111486001 25 - TSS region transcription start site region 117823
Tssr117824 12 111486088 to 111486108 20 - TSS region transcription start site region 117824
Gm40578 12 111492424 to 111505252 12828 - antisense lncRNA gene predicted gene, 40578
Tssr117825 12 111500836 to 111500850 14 - TSS region transcription start site region 117825
Cpgi5149 12 111504830 to 111505107 277 CpG island CpG island 5149
Tssr117826 12 111505052 to 111505069 17 - TSS region transcription start site region 117826
Tssr117827 12 111515731 to 111515733 2 - TSS region transcription start site region 117827
Tssr115316 12 111535652 to 111535660 8 + TSS region transcription start site region 115316
Tssr115317 12 111536041 to 111536046 5 + TSS region transcription start site region 115317
Tssr115318 12 111536073 to 111536111 38 + TSS region transcription start site region 115318
Tssr115319 12 111537192 to 111537205 13 + TSS region transcription start site region 115319
Cpgi5150 12 111537447 to 111539371 1924 CpG island CpG island 5150
Tssr117828 12 111537917 to 111537956 39 - TSS region transcription start site region 117828
Eif5 12 111538101 to 111546753 8652 + protein coding gene eukaryotic translation initiation factor 5
Tssr115320 12 111538149 to 111538243 94 + TSS region transcription start site region 115320
Tssr115321 12 111538264 to 111538278 14 + TSS region transcription start site region 115321
Tssr115322 12 111538331 to 111538375 44 + TSS region transcription start site region 115322
Tssr115323 12 111538469 to 111538482 13 + TSS region transcription start site region 115323
Tssr117829 12 111538579 to 111538606 27 - TSS region transcription start site region 117829
Tssr115324 12 111538785 to 111538804 19 + TSS region transcription start site region 115324
Tssr115325 12 111538819 to 111538874 55 + TSS region transcription start site region 115325
Tssr115326 12 111539434 to 111539447 13 + TSS region transcription start site region 115326
Tssr115327 12 111540213 to 111540227 14 + TSS region transcription start site region 115327
Snora28 12 111540946 to 111541067 121 + snoRNA gene small nucleolar RNA, H/ACA box 28
Tssr115328 12 111542172 to 111542201 29 + TSS region transcription start site region 115328
Tssr115329 12 111543659 to 111543692 33 + TSS region transcription start site region 115329
Tssr115330 12 111544997 to 111545028 31 + TSS region transcription start site region 115330
Tssr115331 12 111545327 to 111545345 18 + TSS region transcription start site region 115331
Tssr115332 12 111548062 to 111548066 4 + TSS region transcription start site region 115332
Gm48248 12 111558778 to 111559010 232 - pseudogene predicted gene, 48248
2810029C07Rik 12 111572317 to 111574402 2085 - bidirectional promoter lncRNA gene RIKEN cDNA 2810029C07 gene
Cpgi5151 12 111574057 to 111575771 1714 CpG island CpG island 5151
Tssr117830 12 111574309 to 111574342 33 - TSS region transcription start site region 117830
Tssr117831 12 111574384 to 111574405 21 - TSS region transcription start site region 117831
Tssr115333 12 111574491 to 111574542 51 + TSS region transcription start site region 115333
Mark3 12 111574523 to 111656221 81698 + protein coding gene MAP/microtubule affinity regulating kinase 3
Tssr115334 12 111583624 to 111583629 5 + TSS region transcription start site region 115334
Tssr115335 12 111583640 to 111583654 14 + TSS region transcription start site region 115335
Tssr115336 12 111583662 to 111583665 3 + TSS region transcription start site region 115336
Tssr115337 12 111592649 to 111592672 23 + TSS region transcription start site region 115337
Gm48286 12 111616870 to 111637388 20518 + sense overlapping lncRNA gene predicted gene, 48286