Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:111431392-112022127

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Exoc3l4 12 111417430 to 111431680 14250 + protein coding gene exocyst complex component 3-like 4
Tssr115279 12 111437906 to 111437910 4 + TSS region transcription start site region 115279
Cpgi5146 12 111442273 to 111443005 732 CpG island CpG island 5146
Tssr117815 12 111442300 to 111442309 9 - TSS region transcription start site region 117815
Tssr115280 12 111442423 to 111442435 12 + TSS region transcription start site region 115280
Tssr115281 12 111442453 to 111442480 27 + TSS region transcription start site region 115281
Tnfaip2 12 111442469 to 111455018 12549 + protein coding gene tumor necrosis factor, alpha-induced protein 2
Tssr115282 12 111442535 to 111442547 12 + TSS region transcription start site region 115282
Tssr115283 12 111442653 to 111442669 16 + TSS region transcription start site region 115283
Tssr115284 12 111445071 to 111445099 28 + TSS region transcription start site region 115284
Tssr117816 12 111445188 to 111445206 18 - TSS region transcription start site region 117816
Cpgi5147 12 111445217 to 111446275 1058 CpG island CpG island 5147
Tssr117817 12 111445653 to 111445675 22 - TSS region transcription start site region 117817
Tssr115285 12 111445965 to 111445997 32 + TSS region transcription start site region 115285
Tssr115286 12 111446001 to 111446018 17 + TSS region transcription start site region 115286
Tssr115287 12 111446021 to 111446036 15 + TSS region transcription start site region 115287
Tssr115288 12 111449539 to 111449565 26 + TSS region transcription start site region 115288
Tssr115289 12 111449624 to 111449651 27 + TSS region transcription start site region 115289
Tssr115290 12 111449838 to 111449853 15 + TSS region transcription start site region 115290
Tssr115291 12 111449889 to 111449894 5 + TSS region transcription start site region 115291
Tssr115292 12 111450513 to 111450523 10 + TSS region transcription start site region 115292
Tssr115293 12 111451855 to 111451877 22 + TSS region transcription start site region 115293
Tssr115294 12 111451979 to 111451988 9 + TSS region transcription start site region 115294
Tssr115295 12 111452064 to 111452083 19 + TSS region transcription start site region 115295
Tssr115296 12 111452093 to 111452104 11 + TSS region transcription start site region 115296
Tssr115297 12 111452106 to 111452127 21 + TSS region transcription start site region 115297
Tssr115298 12 111452135 to 111452209 74 + TSS region transcription start site region 115298
Tssr115299 12 111452210 to 111452245 35 + TSS region transcription start site region 115299
Tssr115300 12 111452246 to 111452262 16 + TSS region transcription start site region 115300
Tssr115301 12 111452302 to 111452328 26 + TSS region transcription start site region 115301
Tssr115302 12 111452337 to 111452353 16 + TSS region transcription start site region 115302
Tssr115303 12 111452445 to 111452486 41 + TSS region transcription start site region 115303
Tssr115304 12 111453748 to 111453758 10 + TSS region transcription start site region 115304
Tssr115305 12 111453899 to 111453911 12 + TSS region transcription start site region 115305
Tssr117818 12 111454141 to 111454160 19 - TSS region transcription start site region 117818
Tssr115306 12 111454219 to 111454230 11 + TSS region transcription start site region 115306
Tssr115307 12 111454245 to 111454277 32 + TSS region transcription start site region 115307
Tssr115308 12 111454285 to 111454297 12 + TSS region transcription start site region 115308
Tssr115309 12 111454304 to 111454326 22 + TSS region transcription start site region 115309
Tssr115310 12 111454372 to 111454398 26 + TSS region transcription start site region 115310
Tssr115311 12 111454411 to 111454423 12 + TSS region transcription start site region 115311
Tssr115312 12 111454430 to 111454441 11 + TSS region transcription start site region 115312
Tssr115313 12 111454443 to 111454461 18 + TSS region transcription start site region 115313
Tssr115314 12 111454469 to 111454481 12 + TSS region transcription start site region 115314
Tssr115315 12 111454664 to 111454675 11 + TSS region transcription start site region 115315
Tssr117819 12 111455008 to 111455017 9 - TSS region transcription start site region 117819
Tssr117820 12 111458643 to 111458654 11 - TSS region transcription start site region 117820
Gm266 12 111484609 to 111485823 1214 - protein coding gene predicted gene 266
Cpgi5148 12 111485016 to 111486431 1415 CpG island CpG island 5148
Tssr117821 12 111485773 to 111485804 31 - TSS region transcription start site region 117821
Tssr117822 12 111485808 to 111485826 18 - TSS region transcription start site region 117822
Tssr117823 12 111485976 to 111486001 25 - TSS region transcription start site region 117823
Tssr117824 12 111486088 to 111486108 20 - TSS region transcription start site region 117824
Gm40578 12 111492424 to 111505252 12828 - antisense lncRNA gene predicted gene, 40578
Tssr117825 12 111500836 to 111500850 14 - TSS region transcription start site region 117825
Cpgi5149 12 111504830 to 111505107 277 CpG island CpG island 5149
Tssr117826 12 111505052 to 111505069 17 - TSS region transcription start site region 117826
Tssr117827 12 111515731 to 111515733 2 - TSS region transcription start site region 117827
Tssr115316 12 111535652 to 111535660 8 + TSS region transcription start site region 115316
Tssr115317 12 111536041 to 111536046 5 + TSS region transcription start site region 115317
Tssr115318 12 111536073 to 111536111 38 + TSS region transcription start site region 115318
Tssr115319 12 111537192 to 111537205 13 + TSS region transcription start site region 115319
Cpgi5150 12 111537447 to 111539371 1924 CpG island CpG island 5150
Tssr117828 12 111537917 to 111537956 39 - TSS region transcription start site region 117828
Eif5 12 111538101 to 111546753 8652 + protein coding gene eukaryotic translation initiation factor 5
Tssr115320 12 111538149 to 111538243 94 + TSS region transcription start site region 115320
Tssr115321 12 111538264 to 111538278 14 + TSS region transcription start site region 115321
Tssr115322 12 111538331 to 111538375 44 + TSS region transcription start site region 115322
Tssr115323 12 111538469 to 111538482 13 + TSS region transcription start site region 115323
Tssr117829 12 111538579 to 111538606 27 - TSS region transcription start site region 117829
Tssr115324 12 111538785 to 111538804 19 + TSS region transcription start site region 115324
Tssr115325 12 111538819 to 111538874 55 + TSS region transcription start site region 115325
Tssr115326 12 111539434 to 111539447 13 + TSS region transcription start site region 115326
Tssr115327 12 111540213 to 111540227 14 + TSS region transcription start site region 115327
Snora28 12 111540946 to 111541067 121 + snoRNA gene small nucleolar RNA, H/ACA box 28
Tssr115328 12 111542172 to 111542201 29 + TSS region transcription start site region 115328
Tssr115329 12 111543659 to 111543692 33 + TSS region transcription start site region 115329
Tssr115330 12 111544997 to 111545028 31 + TSS region transcription start site region 115330
Tssr115331 12 111545327 to 111545345 18 + TSS region transcription start site region 115331
Tssr115332 12 111548062 to 111548066 4 + TSS region transcription start site region 115332
Gm48248 12 111558778 to 111559010 232 - pseudogene predicted gene, 48248
2810029C07Rik 12 111572317 to 111574402 2085 - bidirectional promoter lncRNA gene RIKEN cDNA 2810029C07 gene
Cpgi5151 12 111574057 to 111575771 1714 CpG island CpG island 5151
Tssr117830 12 111574309 to 111574342 33 - TSS region transcription start site region 117830
Tssr117831 12 111574384 to 111574405 21 - TSS region transcription start site region 117831
Tssr115333 12 111574491 to 111574542 51 + TSS region transcription start site region 115333
Mark3 12 111574523 to 111656221 81698 + protein coding gene MAP/microtubule affinity regulating kinase 3
Tssr115334 12 111583624 to 111583629 5 + TSS region transcription start site region 115334
Tssr115335 12 111583640 to 111583654 14 + TSS region transcription start site region 115335
Tssr115336 12 111583662 to 111583665 3 + TSS region transcription start site region 115336
Tssr115337 12 111592649 to 111592672 23 + TSS region transcription start site region 115337
Gm48286 12 111616870 to 111637388 20518 + sense overlapping lncRNA gene predicted gene, 48286
Ckb 12 111669361 to 111672338 2977 - protein coding gene creatine kinase, brain
Cpgi5152 12 111669524 to 111669826 302 CpG island CpG island 5152
Tssr117832 12 111670485 to 111670506 21 - TSS region transcription start site region 117832
Cpgi5153 12 111670514 to 111672860 2346 CpG island CpG island 5153
Tssr117833 12 111670626 to 111670637 11 - TSS region transcription start site region 117833
Tssr117834 12 111670736 to 111670745 9 - TSS region transcription start site region 117834
Tssr117835 12 111671268 to 111671287 19 - TSS region transcription start site region 117835
Tssr117836 12 111671322 to 111671332 10 - TSS region transcription start site region 117836
Tssr117837 12 111671481 to 111671492 11 - TSS region transcription start site region 117837
Tssr117838 12 111671536 to 111671591 55 - TSS region transcription start site region 117838
Tssr117839 12 111672083 to 111672089 6 - TSS region transcription start site region 117839
Tssr117840 12 111672290 to 111672306 16 - TSS region transcription start site region 117840
Cpgi5154 12 111677613 to 111678966 1353 CpG island CpG island 5154
Tssr115338 12 111678094 to 111678140 46 + TSS region transcription start site region 115338
Trmt61a 12 111678105 to 111683902 5797 + protein coding gene tRNA methyltransferase 61A
Tssr115339 12 111678146 to 111678160 14 + TSS region transcription start site region 115339
Tssr115340 12 111698615 to 111698624 9 + TSS region transcription start site region 115340
Tssr115341 12 111698633 to 111698640 7 + TSS region transcription start site region 115341
Tssr115342 12 111698641 to 111698649 8 + TSS region transcription start site region 115342
Gm36635 12 111703082 to 111705550 2468 + lincRNA gene predicted gene, 36635
Bag5 12 111709488 to 111713257 3769 - protein coding gene BCL2-associated athanogene 5
Tssr115343 12 111712423 to 111712429 6 + TSS region transcription start site region 115343
Cpgi5155 12 111712490 to 111713750 1260 CpG island CpG island 5155
Tssr117841 12 111712879 to 111712904 25 - TSS region transcription start site region 117841
Tssr117842 12 111712909 to 111712932 23 - TSS region transcription start site region 117842
Tssr117843 12 111712936 to 111712939 3 - TSS region transcription start site region 117843
Tssr117844 12 111712946 to 111712958 12 - TSS region transcription start site region 117844
Tssr115344 12 111712973 to 111712985 12 + TSS region transcription start site region 115344
Tssr115345 12 111713001 to 111713031 30 + TSS region transcription start site region 115345
Tssr117845 12 111713058 to 111713116 58 - TSS region transcription start site region 117845
Tssr117846 12 111713185 to 111713218 33 - TSS region transcription start site region 117846
Tssr115346 12 111713255 to 111713303 48 + TSS region transcription start site region 115346
Apopt1 12 111713269 to 111755055 41786 + protein coding gene apoptogenic, mitochondrial 1
Tssr115347 12 111713313 to 111713320 7 + TSS region transcription start site region 115347
Tssr3955 12 111713325 to 111713340 15 + TSS region transcription start site region 3955
Gm15995 12 111726392 to 111727127 735 + unclassified non-coding RNA gene predicted gene 15995
Gm15996 12 111730094 to 111731831 1737 - antisense lncRNA gene predicted gene 15996
Cpgi5156 12 111732486 to 111732851 365 CpG island CpG island 5156
Tssr115348 12 111737680 to 111737683 3 + TSS region transcription start site region 115348
Cpgi5157 12 111758353 to 111759810 1457 CpG island CpG island 5157
Tssr115349 12 111758848 to 111758915 67 + TSS region transcription start site region 115349
Klc1 12 111758849 to 111807844 48995 + protein coding gene kinesin light chain 1
Tssr115350 12 111758923 to 111758939 16 + TSS region transcription start site region 115350
Tssr115351 12 111781753 to 111781770 17 + TSS region transcription start site region 115351
Tssr115352 12 111791109 to 111791174 65 + TSS region transcription start site region 115352
Tssr115353 12 111794753 to 111794764 11 + TSS region transcription start site region 115353
Xrcc3 12 111803192 to 111813873 10681 - protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 3
Tssr117847 12 111804135 to 111804161 26 - TSS region transcription start site region 117847
Tssr117848 12 111809940 to 111809974 34 - TSS region transcription start site region 117848
Cpgi5158 12 111813441 to 111814971 1530 CpG island CpG island 5158
Tssr117849 12 111813834 to 111813858 24 - TSS region transcription start site region 117849
Zfyve21 12 111814169 to 111828388 14219 + protein coding gene zinc finger, FYVE domain containing 21
Tssr115354 12 111814178 to 111814245 67 + TSS region transcription start site region 115354
Tssr115355 12 111814268 to 111814279 11 + TSS region transcription start site region 115355
Ppp1r13b 12 111828458 to 111908105 79647 - protein coding gene protein phosphatase 1, regulatory subunit 13B
Gm19195 12 111860626 to 111861136 510 - pseudogene predicted gene, 19195
Tssr117850 12 111875655 to 111875659 4 - TSS region transcription start site region 117850
Cpgi5159 12 111907279 to 111909006 1727 CpG island CpG island 5159
Tssr117851 12 111907998 to 111908017 19 - TSS region transcription start site region 117851
Tssr117852 12 111908055 to 111908125 70 - TSS region transcription start site region 117852
Tssr117853 12 111909130 to 111909137 7 - TSS region transcription start site region 117853
Tssr117854 12 111909166 to 111909182 16 - TSS region transcription start site region 117854
Gm40898 12 111920189 to 111923501 3312 + lncRNA gene predicted gene, 40898
Tssr3956 12 111920342 to 111920381 39 + TSS region transcription start site region 3956
Gm3565 12 111930429 to 111931037 608 - pseudogene predicted gene 3565
5033406O09Rik 12 111941991 to 111944482 2491 - lincRNA gene RIKEN cDNA 5033406O09 gene
Tssr115356 12 111944603 to 111944615 12 + TSS region transcription start site region 115356
Tssr115357 12 111944634 to 111944646 12 + TSS region transcription start site region 115357
Gm36757 12 111950517 to 111954152 3635 + lincRNA gene predicted gene, 36757
Atp5mpl 12 111961375 to 111966977 5602 - protein coding gene ATP synthase membrane subunit 6.8PL
Cpgi5160 12 111966582 to 111967146 564 CpG island CpG island 5160
Tssr117855 12 111966668 to 111966698 30 - TSS region transcription start site region 117855
Tssr117856 12 111966728 to 111966775 47 - TSS region transcription start site region 117856
Tssr115358 12 111966785 to 111966791 6 + TSS region transcription start site region 115358
Tssr115359 12 111966794 to 111966830 36 + TSS region transcription start site region 115359
Tssr117857 12 111966954 to 111967017 63 - TSS region transcription start site region 117857
Tssr3957 12 111967028 to 111967034 6 - TSS region transcription start site region 3957
Cpgi5161 12 111971536 to 111971831 295 CpG island CpG island 5161
Tssr115360 12 111971545 to 111971598 53 + TSS region transcription start site region 115360
Tdrd9 12 111971559 to 112068854 97295 + protein coding gene tudor domain containing 9
Tssr115361 12 111971608 to 111971619 11 + TSS region transcription start site region 115361
Rd3l 12 111979191 to 111981128 1937 - protein coding gene retinal degeneration 3-like
Tssr117858 12 111980124 to 111980166 42 - TSS region transcription start site region 117858
Tssr117859 12 111981053 to 111981064 11 - TSS region transcription start site region 117859
Tssr117860 12 111981109 to 111981114 5 - TSS region transcription start site region 117860
Tssr117861 12 111981118 to 111981129 11 - TSS region transcription start site region 117861
Tssr117862 12 111981136 to 111981151 15 - TSS region transcription start site region 117862
Gm46381 12 112015170 to 112015812 642 - lncRNA gene predicted gene, 46381