Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:111192976-111477718

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Traf3 12 111166370 to 111267153 100783 + protein coding gene TNF receptor-associated factor 3
Tssr115256 12 111198509 to 111198540 31 + TSS region transcription start site region 115256
Tssr115257 12 111202765 to 111202783 18 + TSS region transcription start site region 115257
Cpgi5135 12 111271032 to 111272060 1028 CpG island CpG island 5135
Tssr115258 12 111271089 to 111271121 32 + TSS region transcription start site region 115258
Amn 12 111271096 to 111276426 5330 + protein coding gene amnionless
Tssr117809 12 111273029 to 111273034 5 - TSS region transcription start site region 117809
Cpgi5136 12 111273832 to 111276133 2301 CpG island CpG island 5136
Tssr115259 12 111274655 to 111274683 28 + TSS region transcription start site region 115259
A230087F16Rik 12 111284429 to 111292887 8458 + antisense lncRNA gene RIKEN cDNA A230087F16 gene
Cdc42bpb 12 111292976 to 111377718 84742 - protein coding gene CDC42 binding protein kinase beta
Cpgi5137 12 111324366 to 111324860 494 CpG island CpG island 5137
Cpgi5138 12 111360861 to 111361184 323 CpG island CpG island 5138
Cpgi5139 12 111376702 to 111378587 1885 CpG island CpG island 5139
Tssr117810 12 111377438 to 111377502 64 - TSS region transcription start site region 117810
Tssr117811 12 111377585 to 111377596 11 - TSS region transcription start site region 117811
Tssr117812 12 111377604 to 111377696 92 - TSS region transcription start site region 117812
Tssr117813 12 111377705 to 111377719 14 - TSS region transcription start site region 117813
Tssr117814 12 111377786 to 111377799 13 - TSS region transcription start site region 117814
Cpgi5140 12 111406509 to 111407129 620 CpG island CpG island 5140
Lbhd2 12 111406809 to 111412090 5281 + protein coding gene LBH domain containing 2
Tssr115260 12 111408518 to 111408557 39 + TSS region transcription start site region 115260
Cpgi5141 12 111413344 to 111413668 324 CpG island CpG island 5141
Exoc3l4 12 111417430 to 111431680 14250 + protein coding gene exocyst complex component 3-like 4
Tssr115261 12 111417451 to 111417467 16 + TSS region transcription start site region 115261
Tssr115262 12 111417486 to 111417493 7 + TSS region transcription start site region 115262
Tssr115263 12 111417601 to 111417679 78 + TSS region transcription start site region 115263
Tssr115264 12 111420484 to 111420537 53 + TSS region transcription start site region 115264
Tssr115265 12 111420596 to 111420607 11 + TSS region transcription start site region 115265
Tssr115266 12 111421447 to 111421456 9 + TSS region transcription start site region 115266
Tssr115267 12 111421463 to 111421485 22 + TSS region transcription start site region 115267
Tssr115268 12 111421491 to 111421504 13 + TSS region transcription start site region 115268
Tssr115269 12 111421528 to 111421539 11 + TSS region transcription start site region 115269
Tssr115270 12 111421545 to 111421561 16 + TSS region transcription start site region 115270
Tssr115271 12 111423113 to 111423133 20 + TSS region transcription start site region 115271
Tssr115272 12 111423248 to 111423264 16 + TSS region transcription start site region 115272
Cpgi5142 12 111423339 to 111424191 852 CpG island CpG island 5142
Cpgi5143 12 111425371 to 111426333 962 CpG island CpG island 5143
Gm10425 12 111426874 to 111430946 4072 - antisense lncRNA gene predicted gene 10425
Tssr115273 12 111428626 to 111428652 26 + TSS region transcription start site region 115273
Tssr115274 12 111429029 to 111429110 81 + TSS region transcription start site region 115274
Tssr115275 12 111429132 to 111429143 11 + TSS region transcription start site region 115275
Tssr115276 12 111429158 to 111429172 14 + TSS region transcription start site region 115276
Tssr115277 12 111429183 to 111429260 77 + TSS region transcription start site region 115277
Tssr115278 12 111429283 to 111429300 17 + TSS region transcription start site region 115278
Cpgi5144 12 111429314 to 111430089 775 CpG island CpG island 5144
Cpgi5145 12 111430654 to 111430892 238 CpG island CpG island 5145
Tssr115279 12 111437906 to 111437910 4 + TSS region transcription start site region 115279
Cpgi5146 12 111442273 to 111443005 732 CpG island CpG island 5146
Tssr117815 12 111442300 to 111442309 9 - TSS region transcription start site region 117815
Tssr115280 12 111442423 to 111442435 12 + TSS region transcription start site region 115280
Tssr115281 12 111442453 to 111442480 27 + TSS region transcription start site region 115281
Tnfaip2 12 111442469 to 111455018 12549 + protein coding gene tumor necrosis factor, alpha-induced protein 2
Tssr115282 12 111442535 to 111442547 12 + TSS region transcription start site region 115282
Tssr115283 12 111442653 to 111442669 16 + TSS region transcription start site region 115283
Tssr115284 12 111445071 to 111445099 28 + TSS region transcription start site region 115284
Tssr117816 12 111445188 to 111445206 18 - TSS region transcription start site region 117816
Cpgi5147 12 111445217 to 111446275 1058 CpG island CpG island 5147
Tssr117817 12 111445653 to 111445675 22 - TSS region transcription start site region 117817
Tssr115285 12 111445965 to 111445997 32 + TSS region transcription start site region 115285
Tssr115286 12 111446001 to 111446018 17 + TSS region transcription start site region 115286
Tssr115287 12 111446021 to 111446036 15 + TSS region transcription start site region 115287
Tssr115288 12 111449539 to 111449565 26 + TSS region transcription start site region 115288
Tssr115289 12 111449624 to 111449651 27 + TSS region transcription start site region 115289
Tssr115290 12 111449838 to 111449853 15 + TSS region transcription start site region 115290
Tssr115291 12 111449889 to 111449894 5 + TSS region transcription start site region 115291
Tssr115292 12 111450513 to 111450523 10 + TSS region transcription start site region 115292
Tssr115293 12 111451855 to 111451877 22 + TSS region transcription start site region 115293
Tssr115294 12 111451979 to 111451988 9 + TSS region transcription start site region 115294
Tssr115295 12 111452064 to 111452083 19 + TSS region transcription start site region 115295
Tssr115296 12 111452093 to 111452104 11 + TSS region transcription start site region 115296
Tssr115297 12 111452106 to 111452127 21 + TSS region transcription start site region 115297
Tssr115298 12 111452135 to 111452209 74 + TSS region transcription start site region 115298
Tssr115299 12 111452210 to 111452245 35 + TSS region transcription start site region 115299
Tssr115300 12 111452246 to 111452262 16 + TSS region transcription start site region 115300
Tssr115301 12 111452302 to 111452328 26 + TSS region transcription start site region 115301
Tssr115302 12 111452337 to 111452353 16 + TSS region transcription start site region 115302
Tssr115303 12 111452445 to 111452486 41 + TSS region transcription start site region 115303
Tssr115304 12 111453748 to 111453758 10 + TSS region transcription start site region 115304
Tssr115305 12 111453899 to 111453911 12 + TSS region transcription start site region 115305
Tssr117818 12 111454141 to 111454160 19 - TSS region transcription start site region 117818
Tssr115306 12 111454219 to 111454230 11 + TSS region transcription start site region 115306
Tssr115307 12 111454245 to 111454277 32 + TSS region transcription start site region 115307
Tssr115308 12 111454285 to 111454297 12 + TSS region transcription start site region 115308
Tssr115309 12 111454304 to 111454326 22 + TSS region transcription start site region 115309
Tssr115310 12 111454372 to 111454398 26 + TSS region transcription start site region 115310
Tssr115311 12 111454411 to 111454423 12 + TSS region transcription start site region 115311
Tssr115312 12 111454430 to 111454441 11 + TSS region transcription start site region 115312
Tssr115313 12 111454443 to 111454461 18 + TSS region transcription start site region 115313
Tssr115314 12 111454469 to 111454481 12 + TSS region transcription start site region 115314
Tssr115315 12 111454664 to 111454675 11 + TSS region transcription start site region 115315
Tssr117819 12 111455008 to 111455017 9 - TSS region transcription start site region 117819
Tssr117820 12 111458643 to 111458654 11 - TSS region transcription start site region 117820