Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:111184889-111714894

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Traf3 12 111166370 to 111267153 100783 + protein coding gene TNF receptor-associated factor 3
Tssr115256 12 111198509 to 111198540 31 + TSS region transcription start site region 115256
Tssr115257 12 111202765 to 111202783 18 + TSS region transcription start site region 115257
Cpgi5135 12 111271032 to 111272060 1028 CpG island CpG island 5135
Tssr115258 12 111271089 to 111271121 32 + TSS region transcription start site region 115258
Amn 12 111271096 to 111276426 5330 + protein coding gene amnionless
Tssr117809 12 111273029 to 111273034 5 - TSS region transcription start site region 117809
Cpgi5136 12 111273832 to 111276133 2301 CpG island CpG island 5136
Tssr115259 12 111274655 to 111274683 28 + TSS region transcription start site region 115259
A230087F16Rik 12 111284429 to 111292887 8458 + antisense lncRNA gene RIKEN cDNA A230087F16 gene
Cdc42bpb 12 111292976 to 111377718 84742 - protein coding gene CDC42 binding protein kinase beta
Cpgi5137 12 111324366 to 111324860 494 CpG island CpG island 5137
Cpgi5138 12 111360861 to 111361184 323 CpG island CpG island 5138
Cpgi5139 12 111376702 to 111378587 1885 CpG island CpG island 5139
Tssr117810 12 111377438 to 111377502 64 - TSS region transcription start site region 117810
Tssr117811 12 111377585 to 111377596 11 - TSS region transcription start site region 117811
Tssr117812 12 111377604 to 111377696 92 - TSS region transcription start site region 117812
Tssr117813 12 111377705 to 111377719 14 - TSS region transcription start site region 117813
Tssr117814 12 111377786 to 111377799 13 - TSS region transcription start site region 117814
Cpgi5140 12 111406509 to 111407129 620 CpG island CpG island 5140
Lbhd2 12 111406809 to 111412090 5281 + protein coding gene LBH domain containing 2
Tssr115260 12 111408518 to 111408557 39 + TSS region transcription start site region 115260
Cpgi5141 12 111413344 to 111413668 324 CpG island CpG island 5141
Exoc3l4 12 111417430 to 111431680 14250 + protein coding gene exocyst complex component 3-like 4
Tssr115261 12 111417451 to 111417467 16 + TSS region transcription start site region 115261
Tssr115262 12 111417486 to 111417493 7 + TSS region transcription start site region 115262
Tssr115263 12 111417601 to 111417679 78 + TSS region transcription start site region 115263
Tssr115264 12 111420484 to 111420537 53 + TSS region transcription start site region 115264
Tssr115265 12 111420596 to 111420607 11 + TSS region transcription start site region 115265
Tssr115266 12 111421447 to 111421456 9 + TSS region transcription start site region 115266
Tssr115267 12 111421463 to 111421485 22 + TSS region transcription start site region 115267
Tssr115268 12 111421491 to 111421504 13 + TSS region transcription start site region 115268
Tssr115269 12 111421528 to 111421539 11 + TSS region transcription start site region 115269
Tssr115270 12 111421545 to 111421561 16 + TSS region transcription start site region 115270
Tssr115271 12 111423113 to 111423133 20 + TSS region transcription start site region 115271
Tssr115272 12 111423248 to 111423264 16 + TSS region transcription start site region 115272
Cpgi5142 12 111423339 to 111424191 852 CpG island CpG island 5142
Cpgi5143 12 111425371 to 111426333 962 CpG island CpG island 5143
Gm10425 12 111426874 to 111430946 4072 - antisense lncRNA gene predicted gene 10425
Tssr115273 12 111428626 to 111428652 26 + TSS region transcription start site region 115273
Tssr115274 12 111429029 to 111429110 81 + TSS region transcription start site region 115274
Tssr115275 12 111429132 to 111429143 11 + TSS region transcription start site region 115275
Tssr115276 12 111429158 to 111429172 14 + TSS region transcription start site region 115276
Tssr115277 12 111429183 to 111429260 77 + TSS region transcription start site region 115277
Tssr115278 12 111429283 to 111429300 17 + TSS region transcription start site region 115278
Cpgi5144 12 111429314 to 111430089 775 CpG island CpG island 5144
Cpgi5145 12 111430654 to 111430892 238 CpG island CpG island 5145
Tssr115279 12 111437906 to 111437910 4 + TSS region transcription start site region 115279
Cpgi5146 12 111442273 to 111443005 732 CpG island CpG island 5146
Tssr117815 12 111442300 to 111442309 9 - TSS region transcription start site region 117815
Tssr115280 12 111442423 to 111442435 12 + TSS region transcription start site region 115280
Tssr115281 12 111442453 to 111442480 27 + TSS region transcription start site region 115281
Tnfaip2 12 111442469 to 111455018 12549 + protein coding gene tumor necrosis factor, alpha-induced protein 2
Tssr115282 12 111442535 to 111442547 12 + TSS region transcription start site region 115282
Tssr115283 12 111442653 to 111442669 16 + TSS region transcription start site region 115283
Tssr115284 12 111445071 to 111445099 28 + TSS region transcription start site region 115284
Tssr117816 12 111445188 to 111445206 18 - TSS region transcription start site region 117816
Cpgi5147 12 111445217 to 111446275 1058 CpG island CpG island 5147
Tssr117817 12 111445653 to 111445675 22 - TSS region transcription start site region 117817
Tssr115285 12 111445965 to 111445997 32 + TSS region transcription start site region 115285
Tssr115286 12 111446001 to 111446018 17 + TSS region transcription start site region 115286
Tssr115287 12 111446021 to 111446036 15 + TSS region transcription start site region 115287
Tssr115288 12 111449539 to 111449565 26 + TSS region transcription start site region 115288
Tssr115289 12 111449624 to 111449651 27 + TSS region transcription start site region 115289
Tssr115290 12 111449838 to 111449853 15 + TSS region transcription start site region 115290
Tssr115291 12 111449889 to 111449894 5 + TSS region transcription start site region 115291
Tssr115292 12 111450513 to 111450523 10 + TSS region transcription start site region 115292
Tssr115293 12 111451855 to 111451877 22 + TSS region transcription start site region 115293
Tssr115294 12 111451979 to 111451988 9 + TSS region transcription start site region 115294
Tssr115295 12 111452064 to 111452083 19 + TSS region transcription start site region 115295
Tssr115296 12 111452093 to 111452104 11 + TSS region transcription start site region 115296
Tssr115297 12 111452106 to 111452127 21 + TSS region transcription start site region 115297
Tssr115298 12 111452135 to 111452209 74 + TSS region transcription start site region 115298
Tssr115299 12 111452210 to 111452245 35 + TSS region transcription start site region 115299
Tssr115300 12 111452246 to 111452262 16 + TSS region transcription start site region 115300
Tssr115301 12 111452302 to 111452328 26 + TSS region transcription start site region 115301
Tssr115302 12 111452337 to 111452353 16 + TSS region transcription start site region 115302
Tssr115303 12 111452445 to 111452486 41 + TSS region transcription start site region 115303
Tssr115304 12 111453748 to 111453758 10 + TSS region transcription start site region 115304
Tssr115305 12 111453899 to 111453911 12 + TSS region transcription start site region 115305
Tssr117818 12 111454141 to 111454160 19 - TSS region transcription start site region 117818
Tssr115306 12 111454219 to 111454230 11 + TSS region transcription start site region 115306
Tssr115307 12 111454245 to 111454277 32 + TSS region transcription start site region 115307
Tssr115308 12 111454285 to 111454297 12 + TSS region transcription start site region 115308
Tssr115309 12 111454304 to 111454326 22 + TSS region transcription start site region 115309
Tssr115310 12 111454372 to 111454398 26 + TSS region transcription start site region 115310
Tssr115311 12 111454411 to 111454423 12 + TSS region transcription start site region 115311
Tssr115312 12 111454430 to 111454441 11 + TSS region transcription start site region 115312
Tssr115313 12 111454443 to 111454461 18 + TSS region transcription start site region 115313
Tssr115314 12 111454469 to 111454481 12 + TSS region transcription start site region 115314
Tssr115315 12 111454664 to 111454675 11 + TSS region transcription start site region 115315
Tssr117819 12 111455008 to 111455017 9 - TSS region transcription start site region 117819
Tssr117820 12 111458643 to 111458654 11 - TSS region transcription start site region 117820
Gm266 12 111484609 to 111485823 1214 - protein coding gene predicted gene 266
Cpgi5148 12 111485016 to 111486431 1415 CpG island CpG island 5148
Tssr117821 12 111485773 to 111485804 31 - TSS region transcription start site region 117821
Tssr117822 12 111485808 to 111485826 18 - TSS region transcription start site region 117822
Tssr117823 12 111485976 to 111486001 25 - TSS region transcription start site region 117823
Tssr117824 12 111486088 to 111486108 20 - TSS region transcription start site region 117824
Gm40578 12 111492424 to 111505252 12828 - antisense lncRNA gene predicted gene, 40578
Tssr117825 12 111500836 to 111500850 14 - TSS region transcription start site region 117825
Cpgi5149 12 111504830 to 111505107 277 CpG island CpG island 5149
Tssr117826 12 111505052 to 111505069 17 - TSS region transcription start site region 117826
Tssr117827 12 111515731 to 111515733 2 - TSS region transcription start site region 117827
Tssr115316 12 111535652 to 111535660 8 + TSS region transcription start site region 115316
Tssr115317 12 111536041 to 111536046 5 + TSS region transcription start site region 115317
Tssr115318 12 111536073 to 111536111 38 + TSS region transcription start site region 115318
Tssr115319 12 111537192 to 111537205 13 + TSS region transcription start site region 115319
Cpgi5150 12 111537447 to 111539371 1924 CpG island CpG island 5150
Tssr117828 12 111537917 to 111537956 39 - TSS region transcription start site region 117828
Eif5 12 111538101 to 111546753 8652 + protein coding gene eukaryotic translation initiation factor 5
Tssr115320 12 111538149 to 111538243 94 + TSS region transcription start site region 115320
Tssr115321 12 111538264 to 111538278 14 + TSS region transcription start site region 115321
Tssr115322 12 111538331 to 111538375 44 + TSS region transcription start site region 115322
Tssr115323 12 111538469 to 111538482 13 + TSS region transcription start site region 115323
Tssr117829 12 111538579 to 111538606 27 - TSS region transcription start site region 117829
Tssr115324 12 111538785 to 111538804 19 + TSS region transcription start site region 115324
Tssr115325 12 111538819 to 111538874 55 + TSS region transcription start site region 115325
Tssr115326 12 111539434 to 111539447 13 + TSS region transcription start site region 115326
Tssr115327 12 111540213 to 111540227 14 + TSS region transcription start site region 115327
Snora28 12 111540946 to 111541067 121 + snoRNA gene small nucleolar RNA, H/ACA box 28
Tssr115328 12 111542172 to 111542201 29 + TSS region transcription start site region 115328
Tssr115329 12 111543659 to 111543692 33 + TSS region transcription start site region 115329
Tssr115330 12 111544997 to 111545028 31 + TSS region transcription start site region 115330
Tssr115331 12 111545327 to 111545345 18 + TSS region transcription start site region 115331
Tssr115332 12 111548062 to 111548066 4 + TSS region transcription start site region 115332
Gm48248 12 111558778 to 111559010 232 - pseudogene predicted gene, 48248
2810029C07Rik 12 111572317 to 111574402 2085 - bidirectional promoter lncRNA gene RIKEN cDNA 2810029C07 gene
Cpgi5151 12 111574057 to 111575771 1714 CpG island CpG island 5151
Tssr117830 12 111574309 to 111574342 33 - TSS region transcription start site region 117830
Tssr117831 12 111574384 to 111574405 21 - TSS region transcription start site region 117831
Tssr115333 12 111574491 to 111574542 51 + TSS region transcription start site region 115333
Mark3 12 111574523 to 111656221 81698 + protein coding gene MAP/microtubule affinity regulating kinase 3
Tssr115334 12 111583624 to 111583629 5 + TSS region transcription start site region 115334
Tssr115335 12 111583640 to 111583654 14 + TSS region transcription start site region 115335
Tssr115336 12 111583662 to 111583665 3 + TSS region transcription start site region 115336
Tssr115337 12 111592649 to 111592672 23 + TSS region transcription start site region 115337
Gm48286 12 111616870 to 111637388 20518 + sense overlapping lncRNA gene predicted gene, 48286
Ckb 12 111669361 to 111672338 2977 - protein coding gene creatine kinase, brain
Cpgi5152 12 111669524 to 111669826 302 CpG island CpG island 5152
Tssr117832 12 111670485 to 111670506 21 - TSS region transcription start site region 117832
Cpgi5153 12 111670514 to 111672860 2346 CpG island CpG island 5153
Tssr117833 12 111670626 to 111670637 11 - TSS region transcription start site region 117833
Tssr117834 12 111670736 to 111670745 9 - TSS region transcription start site region 117834
Tssr117835 12 111671268 to 111671287 19 - TSS region transcription start site region 117835
Tssr117836 12 111671322 to 111671332 10 - TSS region transcription start site region 117836
Tssr117837 12 111671481 to 111671492 11 - TSS region transcription start site region 117837
Tssr117838 12 111671536 to 111671591 55 - TSS region transcription start site region 117838
Tssr117839 12 111672083 to 111672089 6 - TSS region transcription start site region 117839
Tssr117840 12 111672290 to 111672306 16 - TSS region transcription start site region 117840
Cpgi5154 12 111677613 to 111678966 1353 CpG island CpG island 5154
Tssr115338 12 111678094 to 111678140 46 + TSS region transcription start site region 115338
Trmt61a 12 111678105 to 111683902 5797 + protein coding gene tRNA methyltransferase 61A
Tssr115339 12 111678146 to 111678160 14 + TSS region transcription start site region 115339
Tssr115340 12 111698615 to 111698624 9 + TSS region transcription start site region 115340
Tssr115341 12 111698633 to 111698640 7 + TSS region transcription start site region 115341
Tssr115342 12 111698641 to 111698649 8 + TSS region transcription start site region 115342
Gm36635 12 111703082 to 111705550 2468 + lincRNA gene predicted gene, 36635
Bag5 12 111709488 to 111713257 3769 - protein coding gene BCL2-associated athanogene 5
Tssr115343 12 111712423 to 111712429 6 + TSS region transcription start site region 115343
Cpgi5155 12 111712490 to 111713750 1260 CpG island CpG island 5155
Tssr117841 12 111712879 to 111712904 25 - TSS region transcription start site region 117841
Tssr117842 12 111712909 to 111712932 23 - TSS region transcription start site region 117842
Tssr117843 12 111712936 to 111712939 3 - TSS region transcription start site region 117843
Tssr117844 12 111712946 to 111712958 12 - TSS region transcription start site region 117844
Tssr115344 12 111712973 to 111712985 12 + TSS region transcription start site region 115344
Tssr115345 12 111713001 to 111713031 30 + TSS region transcription start site region 115345
Tssr117845 12 111713058 to 111713116 58 - TSS region transcription start site region 117845
Tssr117846 12 111713185 to 111713218 33 - TSS region transcription start site region 117846
Tssr115346 12 111713255 to 111713303 48 + TSS region transcription start site region 115346
Apopt1 12 111713269 to 111755055 41786 + protein coding gene apoptogenic, mitochondrial 1
Tssr115347 12 111713313 to 111713320 7 + TSS region transcription start site region 115347
Tssr3955 12 111713325 to 111713340 15 + TSS region transcription start site region 3955