Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:110953509-111443540

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tecpr2 12 110889264 to 110972394 83130 + protein coding gene tectonin beta-propeller repeat containing 2
Tssr115241 12 110954193 to 110954197 4 + TSS region transcription start site region 115241
Gm40897 12 110957693 to 110959639 1946 + lncRNA gene predicted gene, 40897
Ankrd9 12 110975353 to 110979040 3687 - protein coding gene ankyrin repeat domain 9
Cpgi5128 12 110976627 to 110977654 1027 CpG island CpG island 5128
Cpgi5129 12 110978243 to 110979579 1336 CpG island CpG island 5129
Tssr117803 12 110978620 to 110978643 23 - TSS region transcription start site region 117803
Tssr117804 12 110978943 to 110978956 13 - TSS region transcription start site region 117804
Tssr117805 12 110978964 to 110978979 15 - TSS region transcription start site region 117805
Tssr117806 12 110978981 to 110979028 47 - TSS region transcription start site region 117806
Tssr3954 12 110985405 to 110985417 12 + TSS region transcription start site region 3954
Gm48630 12 110985984 to 110987118 1134 - unclassified gene predicted gene, 48630
Tssr117807 12 110987104 to 110987110 6 - TSS region transcription start site region 117807
Tssr117808 12 110987130 to 110987145 15 - TSS region transcription start site region 117808
Cpgi5130 12 110991511 to 110991805 294 CpG island CpG island 5130
Tssr115242 12 110991599 to 110991601 2 + TSS region transcription start site region 115242
Cpgi5131 12 110992029 to 110992906 877 CpG island CpG island 5131
6030440G07Rik 12 110994398 to 111013869 19471 + lincRNA gene RIKEN cDNA 6030440G07 gene
Cpgi5132 12 111007946 to 111008143 197 CpG island CpG island 5132
Gm48631 12 111017444 to 111018402 958 - unclassified gene predicted gene, 48631
Gm35846 12 111028352 to 111034200 5848 + lncRNA gene predicted gene, 35846
Tssr115243 12 111029102 to 111029105 3 + TSS region transcription start site region 115243
Gm46380 12 111034502 to 111038223 3721 + lncRNA gene predicted gene, 46380
Cpgi5133 12 111038274 to 111040465 2191 CpG island CpG island 5133
Tssr115244 12 111039334 to 111039400 66 + TSS region transcription start site region 115244
Rcor1 12 111039351 to 111115901 76550 + protein coding gene REST corepressor 1
Tssr115245 12 111040833 to 111040839 6 + TSS region transcription start site region 115245
Gm46379 12 111067764 to 111068028 264 - pseudogene predicted gene, 46379
Tssr115246 12 111067891 to 111067913 22 + TSS region transcription start site region 115246
Tssr115247 12 111076507 to 111076511 4 + TSS region transcription start site region 115247
Gm10158 12 111079468 to 111081423 1955 unclassified gene predicted gene 10158
Gm48632 12 111091200 to 111093941 2741 + unclassified gene predicted gene, 48632
Tssr115248 12 111152018 to 111152019 1 + TSS region transcription start site region 115248
4930595D18Rik 12 111159850 to 111184491 24641 - protein coding gene RIKEN cDNA 4930595D18 gene
Tssr115249 12 111160190 to 111160201 11 + TSS region transcription start site region 115249
Tssr115250 12 111160216 to 111160227 11 + TSS region transcription start site region 115250
Tssr115251 12 111160263 to 111160272 9 + TSS region transcription start site region 115251
Cpgi5134 12 111165579 to 111167282 1703 CpG island CpG island 5134
Tssr115252 12 111166349 to 111166397 48 + TSS region transcription start site region 115252
Traf3 12 111166370 to 111267153 100783 + protein coding gene TNF receptor-associated factor 3
Tssr115253 12 111166413 to 111166471 58 + TSS region transcription start site region 115253
Tssr115254 12 111166485 to 111166520 35 + TSS region transcription start site region 115254
Tssr115255 12 111166536 to 111166547 11 + TSS region transcription start site region 115255
Dps2 12 111179630 to 111179755 125 QTL delta power in slow-wave sleep 2
D12Mit280 12 111179630 to 111179755 125 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 280
Tssr115256 12 111198509 to 111198540 31 + TSS region transcription start site region 115256
Tssr115257 12 111202765 to 111202783 18 + TSS region transcription start site region 115257
Cpgi5135 12 111271032 to 111272060 1028 CpG island CpG island 5135
Tssr115258 12 111271089 to 111271121 32 + TSS region transcription start site region 115258
Amn 12 111271096 to 111276426 5330 + protein coding gene amnionless
Tssr117809 12 111273029 to 111273034 5 - TSS region transcription start site region 117809
Cpgi5136 12 111273832 to 111276133 2301 CpG island CpG island 5136
Tssr115259 12 111274655 to 111274683 28 + TSS region transcription start site region 115259
A230087F16Rik 12 111284429 to 111292887 8458 + antisense lncRNA gene RIKEN cDNA A230087F16 gene
Cdc42bpb 12 111292976 to 111377718 84742 - protein coding gene CDC42 binding protein kinase beta
Cpgi5137 12 111324366 to 111324860 494 CpG island CpG island 5137
Cpgi5138 12 111360861 to 111361184 323 CpG island CpG island 5138
Cpgi5139 12 111376702 to 111378587 1885 CpG island CpG island 5139
Tssr117810 12 111377438 to 111377502 64 - TSS region transcription start site region 117810
Tssr117811 12 111377585 to 111377596 11 - TSS region transcription start site region 117811
Tssr117812 12 111377604 to 111377696 92 - TSS region transcription start site region 117812
Tssr117813 12 111377705 to 111377719 14 - TSS region transcription start site region 117813
Tssr117814 12 111377786 to 111377799 13 - TSS region transcription start site region 117814
Cpgi5140 12 111406509 to 111407129 620 CpG island CpG island 5140
Lbhd2 12 111406809 to 111412090 5281 + protein coding gene LBH domain containing 2
Tssr115260 12 111408518 to 111408557 39 + TSS region transcription start site region 115260
Cpgi5141 12 111413344 to 111413668 324 CpG island CpG island 5141
Exoc3l4 12 111417430 to 111431680 14250 + protein coding gene exocyst complex component 3-like 4
Tssr115261 12 111417451 to 111417467 16 + TSS region transcription start site region 115261
Tssr115262 12 111417486 to 111417493 7 + TSS region transcription start site region 115262
Tssr115263 12 111417601 to 111417679 78 + TSS region transcription start site region 115263
Tssr115264 12 111420484 to 111420537 53 + TSS region transcription start site region 115264
Tssr115265 12 111420596 to 111420607 11 + TSS region transcription start site region 115265
Tssr115266 12 111421447 to 111421456 9 + TSS region transcription start site region 115266
Tssr115267 12 111421463 to 111421485 22 + TSS region transcription start site region 115267
Tssr115268 12 111421491 to 111421504 13 + TSS region transcription start site region 115268
Tssr115269 12 111421528 to 111421539 11 + TSS region transcription start site region 115269
Tssr115270 12 111421545 to 111421561 16 + TSS region transcription start site region 115270
Tssr115271 12 111423113 to 111423133 20 + TSS region transcription start site region 115271
Tssr115272 12 111423248 to 111423264 16 + TSS region transcription start site region 115272
Cpgi5142 12 111423339 to 111424191 852 CpG island CpG island 5142
Cpgi5143 12 111425371 to 111426333 962 CpG island CpG island 5143
Gm10425 12 111426874 to 111430946 4072 - antisense lncRNA gene predicted gene 10425
Tssr115273 12 111428626 to 111428652 26 + TSS region transcription start site region 115273
Tssr115274 12 111429029 to 111429110 81 + TSS region transcription start site region 115274
Tssr115275 12 111429132 to 111429143 11 + TSS region transcription start site region 115275
Tssr115276 12 111429158 to 111429172 14 + TSS region transcription start site region 115276
Tssr115277 12 111429183 to 111429260 77 + TSS region transcription start site region 115277
Tssr115278 12 111429283 to 111429300 17 + TSS region transcription start site region 115278
Cpgi5144 12 111429314 to 111430089 775 CpG island CpG island 5144
Cpgi5145 12 111430654 to 111430892 238 CpG island CpG island 5145
Tssr115279 12 111437906 to 111437910 4 + TSS region transcription start site region 115279
Cpgi5146 12 111442273 to 111443005 732 CpG island CpG island 5146
Tssr117815 12 111442300 to 111442309 9 - TSS region transcription start site region 117815
Tssr115280 12 111442423 to 111442435 12 + TSS region transcription start site region 115280
Tssr115281 12 111442453 to 111442480 27 + TSS region transcription start site region 115281
Tnfaip2 12 111442469 to 111455018 12549 + protein coding gene tumor necrosis factor, alpha-induced protein 2
Tssr115282 12 111442535 to 111442547 12 + TSS region transcription start site region 115282
Tssr115283 12 111442653 to 111442669 16 + TSS region transcription start site region 115283