Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:110864468-111296423

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp839 12 110850253 to 110869996 19743 + protein coding gene zinc finger protein 839
Cinp 12 110872610 to 110889145 16535 - protein coding gene cyclin-dependent kinase 2 interacting protein
Gm48405 12 110885935 to 110888157 2222 - unclassified gene predicted gene, 48405
Cpgi5127 12 110888471 to 110889974 1503 CpG island CpG island 5127
Tssr117800 12 110889087 to 110889118 31 - TSS region transcription start site region 117800
Tssr117801 12 110889119 to 110889144 25 - TSS region transcription start site region 117801
Tssr115239 12 110889231 to 110889305 74 + TSS region transcription start site region 115239
Tecpr2 12 110889264 to 110972394 83130 + protein coding gene tectonin beta-propeller repeat containing 2
Tssr117802 12 110889773 to 110889804 31 - TSS region transcription start site region 117802
Tssr115240 12 110898077 to 110898081 4 + TSS region transcription start site region 115240
Rps19-ps6 12 110898114 to 110898551 437 + pseudogene ribosomal protein S19, pseudogene 6
Tssr115241 12 110954193 to 110954197 4 + TSS region transcription start site region 115241
Gm40897 12 110957693 to 110959639 1946 + lncRNA gene predicted gene, 40897
Ankrd9 12 110975353 to 110979040 3687 - protein coding gene ankyrin repeat domain 9
Cpgi5128 12 110976627 to 110977654 1027 CpG island CpG island 5128
Cpgi5129 12 110978243 to 110979579 1336 CpG island CpG island 5129
Tssr117803 12 110978620 to 110978643 23 - TSS region transcription start site region 117803
Tssr117804 12 110978943 to 110978956 13 - TSS region transcription start site region 117804
Tssr117805 12 110978964 to 110978979 15 - TSS region transcription start site region 117805
Tssr117806 12 110978981 to 110979028 47 - TSS region transcription start site region 117806
Tssr3954 12 110985405 to 110985417 12 + TSS region transcription start site region 3954
Gm48630 12 110985984 to 110987118 1134 - unclassified gene predicted gene, 48630
Tssr117807 12 110987104 to 110987110 6 - TSS region transcription start site region 117807
Tssr117808 12 110987130 to 110987145 15 - TSS region transcription start site region 117808
Cpgi5130 12 110991511 to 110991805 294 CpG island CpG island 5130
Tssr115242 12 110991599 to 110991601 2 + TSS region transcription start site region 115242
Cpgi5131 12 110992029 to 110992906 877 CpG island CpG island 5131
6030440G07Rik 12 110994398 to 111013869 19471 + lincRNA gene RIKEN cDNA 6030440G07 gene
Cpgi5132 12 111007946 to 111008143 197 CpG island CpG island 5132
Gm48631 12 111017444 to 111018402 958 - unclassified gene predicted gene, 48631
Gm35846 12 111028352 to 111034200 5848 + lncRNA gene predicted gene, 35846
Tssr115243 12 111029102 to 111029105 3 + TSS region transcription start site region 115243
Gm46380 12 111034502 to 111038223 3721 + lncRNA gene predicted gene, 46380
Cpgi5133 12 111038274 to 111040465 2191 CpG island CpG island 5133
Tssr115244 12 111039334 to 111039400 66 + TSS region transcription start site region 115244
Rcor1 12 111039351 to 111115901 76550 + protein coding gene REST corepressor 1
Tssr115245 12 111040833 to 111040839 6 + TSS region transcription start site region 115245
Gm46379 12 111067764 to 111068028 264 - pseudogene predicted gene, 46379
Tssr115246 12 111067891 to 111067913 22 + TSS region transcription start site region 115246
Tssr115247 12 111076507 to 111076511 4 + TSS region transcription start site region 115247
Gm10158 12 111079468 to 111081423 1955 unclassified gene predicted gene 10158
Gm48632 12 111091200 to 111093941 2741 + unclassified gene predicted gene, 48632
Tssr115248 12 111152018 to 111152019 1 + TSS region transcription start site region 115248
4930595D18Rik 12 111159850 to 111184491 24641 - protein coding gene RIKEN cDNA 4930595D18 gene
Tssr115249 12 111160190 to 111160201 11 + TSS region transcription start site region 115249
Tssr115250 12 111160216 to 111160227 11 + TSS region transcription start site region 115250
Tssr115251 12 111160263 to 111160272 9 + TSS region transcription start site region 115251
Cpgi5134 12 111165579 to 111167282 1703 CpG island CpG island 5134
Tssr115252 12 111166349 to 111166397 48 + TSS region transcription start site region 115252
Traf3 12 111166370 to 111267153 100783 + protein coding gene TNF receptor-associated factor 3
Tssr115253 12 111166413 to 111166471 58 + TSS region transcription start site region 115253
Tssr115254 12 111166485 to 111166520 35 + TSS region transcription start site region 115254
Tssr115255 12 111166536 to 111166547 11 + TSS region transcription start site region 115255
Dps2 12 111179630 to 111179755 125 QTL delta power in slow-wave sleep 2
D12Mit280 12 111179630 to 111179755 125 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 280
Tssr115256 12 111198509 to 111198540 31 + TSS region transcription start site region 115256
Tssr115257 12 111202765 to 111202783 18 + TSS region transcription start site region 115257
Cpgi5135 12 111271032 to 111272060 1028 CpG island CpG island 5135
Tssr115258 12 111271089 to 111271121 32 + TSS region transcription start site region 115258
Amn 12 111271096 to 111276426 5330 + protein coding gene amnionless
Tssr117809 12 111273029 to 111273034 5 - TSS region transcription start site region 117809
Cpgi5136 12 111273832 to 111276133 2301 CpG island CpG island 5136
Tssr115259 12 111274655 to 111274683 28 + TSS region transcription start site region 115259
A230087F16Rik 12 111284429 to 111292887 8458 + antisense lncRNA gene RIKEN cDNA A230087F16 gene
Cdc42bpb 12 111292976 to 111377718 84742 - protein coding gene CDC42 binding protein kinase beta