Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:110843055-112973125

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531 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4921507G05Rik 12 110840962 to 110843087 2125 + bidirectional promoter lncRNA gene RIKEN cDNA 4921507G05 gene
Gm26912 12 110842276 to 110845216 2940 - lincRNA gene predicted gene, 26912
Cpgi5124 12 110843767 to 110844151 384 CpG island CpG island 5124
Cpgi5125 12 110844589 to 110845787 1198 CpG island CpG island 5125
Tssr117798 12 110845184 to 110845216 32 - TSS region transcription start site region 117798
n-TIaat6 12 110845338 to 110845411 73 + tRNA gene nuclear encoded tRNA isoleucine 6 (anticodon AAT)
Cpgi5126 12 110849897 to 110851315 1418 CpG island CpG island 5126
Zfp839 12 110850253 to 110869996 19743 + protein coding gene zinc finger protein 839
Tssr115237 12 110850273 to 110850302 29 + TSS region transcription start site region 115237
Tssr115238 12 110850304 to 110850325 21 + TSS region transcription start site region 115238
Mpc1-ps 12 110858565 to 110858894 329 - pseudogene mitochondrial pyruvate carrier 1, pseudogene
Tssr117799 12 110858911 to 110858945 34 - TSS region transcription start site region 117799
Cinp 12 110872610 to 110889145 16535 - protein coding gene cyclin-dependent kinase 2 interacting protein
Gm48405 12 110885935 to 110888157 2222 - unclassified gene predicted gene, 48405
Cpgi5127 12 110888471 to 110889974 1503 CpG island CpG island 5127
Tssr117800 12 110889087 to 110889118 31 - TSS region transcription start site region 117800
Tssr117801 12 110889119 to 110889144 25 - TSS region transcription start site region 117801
Tssr115239 12 110889231 to 110889305 74 + TSS region transcription start site region 115239
Tecpr2 12 110889264 to 110972394 83130 + protein coding gene tectonin beta-propeller repeat containing 2
Tssr117802 12 110889773 to 110889804 31 - TSS region transcription start site region 117802
Tssr115240 12 110898077 to 110898081 4 + TSS region transcription start site region 115240
Rps19-ps6 12 110898114 to 110898551 437 + pseudogene ribosomal protein S19, pseudogene 6
Tssr115241 12 110954193 to 110954197 4 + TSS region transcription start site region 115241
Gm40897 12 110957693 to 110959639 1946 + lncRNA gene predicted gene, 40897
Ankrd9 12 110975353 to 110979040 3687 - protein coding gene ankyrin repeat domain 9
Cpgi5128 12 110976627 to 110977654 1027 CpG island CpG island 5128
Cpgi5129 12 110978243 to 110979579 1336 CpG island CpG island 5129
Tssr117803 12 110978620 to 110978643 23 - TSS region transcription start site region 117803
Tssr117804 12 110978943 to 110978956 13 - TSS region transcription start site region 117804
Tssr117805 12 110978964 to 110978979 15 - TSS region transcription start site region 117805
Tssr117806 12 110978981 to 110979028 47 - TSS region transcription start site region 117806
Tssr3954 12 110985405 to 110985417 12 + TSS region transcription start site region 3954
Gm48630 12 110985984 to 110987118 1134 - unclassified gene predicted gene, 48630
Tssr117807 12 110987104 to 110987110 6 - TSS region transcription start site region 117807
Tssr117808 12 110987130 to 110987145 15 - TSS region transcription start site region 117808
Cpgi5130 12 110991511 to 110991805 294 CpG island CpG island 5130
Tssr115242 12 110991599 to 110991601 2 + TSS region transcription start site region 115242
Cpgi5131 12 110992029 to 110992906 877 CpG island CpG island 5131
6030440G07Rik 12 110994398 to 111013869 19471 + lincRNA gene RIKEN cDNA 6030440G07 gene
Cpgi5132 12 111007946 to 111008143 197 CpG island CpG island 5132
Gm48631 12 111017444 to 111018402 958 - unclassified gene predicted gene, 48631
Gm35846 12 111028352 to 111034200 5848 + lncRNA gene predicted gene, 35846
Tssr115243 12 111029102 to 111029105 3 + TSS region transcription start site region 115243
Gm46380 12 111034502 to 111038223 3721 + lncRNA gene predicted gene, 46380
Cpgi5133 12 111038274 to 111040465 2191 CpG island CpG island 5133
Tssr115244 12 111039334 to 111039400 66 + TSS region transcription start site region 115244
Rcor1 12 111039351 to 111115901 76550 + protein coding gene REST corepressor 1
Tssr115245 12 111040833 to 111040839 6 + TSS region transcription start site region 115245
Gm46379 12 111067764 to 111068028 264 - pseudogene predicted gene, 46379
Tssr115246 12 111067891 to 111067913 22 + TSS region transcription start site region 115246
Tssr115247 12 111076507 to 111076511 4 + TSS region transcription start site region 115247
Gm10158 12 111079468 to 111081423 1955 unclassified gene predicted gene 10158
Gm48632 12 111091200 to 111093941 2741 + unclassified gene predicted gene, 48632
Tssr115248 12 111152018 to 111152019 1 + TSS region transcription start site region 115248
4930595D18Rik 12 111159850 to 111184491 24641 - protein coding gene RIKEN cDNA 4930595D18 gene
Tssr115249 12 111160190 to 111160201 11 + TSS region transcription start site region 115249
Tssr115250 12 111160216 to 111160227 11 + TSS region transcription start site region 115250
Tssr115251 12 111160263 to 111160272 9 + TSS region transcription start site region 115251
Cpgi5134 12 111165579 to 111167282 1703 CpG island CpG island 5134
Tssr115252 12 111166349 to 111166397 48 + TSS region transcription start site region 115252
Traf3 12 111166370 to 111267153 100783 + protein coding gene TNF receptor-associated factor 3
Tssr115253 12 111166413 to 111166471 58 + TSS region transcription start site region 115253
Tssr115254 12 111166485 to 111166520 35 + TSS region transcription start site region 115254
Tssr115255 12 111166536 to 111166547 11 + TSS region transcription start site region 115255
D12Mit280 12 111179630 to 111179755 125 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 280
Dps2 12 111179630 to 111179755 125 QTL delta power in slow-wave sleep 2
Tssr115256 12 111198509 to 111198540 31 + TSS region transcription start site region 115256
Tssr115257 12 111202765 to 111202783 18 + TSS region transcription start site region 115257
Cpgi5135 12 111271032 to 111272060 1028 CpG island CpG island 5135
Tssr115258 12 111271089 to 111271121 32 + TSS region transcription start site region 115258
Amn 12 111271096 to 111276426 5330 + protein coding gene amnionless
Tssr117809 12 111273029 to 111273034 5 - TSS region transcription start site region 117809
Cpgi5136 12 111273832 to 111276133 2301 CpG island CpG island 5136
Tssr115259 12 111274655 to 111274683 28 + TSS region transcription start site region 115259
A230087F16Rik 12 111284429 to 111292887 8458 + antisense lncRNA gene RIKEN cDNA A230087F16 gene
Cdc42bpb 12 111292976 to 111377718 84742 - protein coding gene CDC42 binding protein kinase beta
Cpgi5137 12 111324366 to 111324860 494 CpG island CpG island 5137
Cpgi5138 12 111360861 to 111361184 323 CpG island CpG island 5138
Cpgi5139 12 111376702 to 111378587 1885 CpG island CpG island 5139
Tssr117810 12 111377438 to 111377502 64 - TSS region transcription start site region 117810
Tssr117811 12 111377585 to 111377596 11 - TSS region transcription start site region 117811
Tssr117812 12 111377604 to 111377696 92 - TSS region transcription start site region 117812
Tssr117813 12 111377705 to 111377719 14 - TSS region transcription start site region 117813
Tssr117814 12 111377786 to 111377799 13 - TSS region transcription start site region 117814
Cpgi5140 12 111406509 to 111407129 620 CpG island CpG island 5140
Lbhd2 12 111406809 to 111412090 5281 + protein coding gene LBH domain containing 2
Tssr115260 12 111408518 to 111408557 39 + TSS region transcription start site region 115260
Cpgi5141 12 111413344 to 111413668 324 CpG island CpG island 5141
Exoc3l4 12 111417430 to 111431680 14250 + protein coding gene exocyst complex component 3-like 4
Tssr115261 12 111417451 to 111417467 16 + TSS region transcription start site region 115261
Tssr115262 12 111417486 to 111417493 7 + TSS region transcription start site region 115262
Tssr115263 12 111417601 to 111417679 78 + TSS region transcription start site region 115263
Tssr115264 12 111420484 to 111420537 53 + TSS region transcription start site region 115264
Tssr115265 12 111420596 to 111420607 11 + TSS region transcription start site region 115265
Tssr115266 12 111421447 to 111421456 9 + TSS region transcription start site region 115266
Tssr115267 12 111421463 to 111421485 22 + TSS region transcription start site region 115267
Tssr115268 12 111421491 to 111421504 13 + TSS region transcription start site region 115268
Tssr115269 12 111421528 to 111421539 11 + TSS region transcription start site region 115269
Tssr115270 12 111421545 to 111421561 16 + TSS region transcription start site region 115270
Tssr115271 12 111423113 to 111423133 20 + TSS region transcription start site region 115271
Tssr115272 12 111423248 to 111423264 16 + TSS region transcription start site region 115272
Cpgi5142 12 111423339 to 111424191 852 CpG island CpG island 5142
Cpgi5143 12 111425371 to 111426333 962 CpG island CpG island 5143
Gm10425 12 111426874 to 111430946 4072 - antisense lncRNA gene predicted gene 10425
Tssr115273 12 111428626 to 111428652 26 + TSS region transcription start site region 115273
Tssr115274 12 111429029 to 111429110 81 + TSS region transcription start site region 115274
Tssr115275 12 111429132 to 111429143 11 + TSS region transcription start site region 115275
Tssr115276 12 111429158 to 111429172 14 + TSS region transcription start site region 115276
Tssr115277 12 111429183 to 111429260 77 + TSS region transcription start site region 115277
Tssr115278 12 111429283 to 111429300 17 + TSS region transcription start site region 115278
Cpgi5144 12 111429314 to 111430089 775 CpG island CpG island 5144
Cpgi5145 12 111430654 to 111430892 238 CpG island CpG island 5145
Tssr115279 12 111437906 to 111437910 4 + TSS region transcription start site region 115279
Cpgi5146 12 111442273 to 111443005 732 CpG island CpG island 5146
Tssr117815 12 111442300 to 111442309 9 - TSS region transcription start site region 117815
Tssr115280 12 111442423 to 111442435 12 + TSS region transcription start site region 115280
Tssr115281 12 111442453 to 111442480 27 + TSS region transcription start site region 115281
Tnfaip2 12 111442469 to 111455018 12549 + protein coding gene tumor necrosis factor, alpha-induced protein 2
Tssr115282 12 111442535 to 111442547 12 + TSS region transcription start site region 115282
Tssr115283 12 111442653 to 111442669 16 + TSS region transcription start site region 115283
Tssr115284 12 111445071 to 111445099 28 + TSS region transcription start site region 115284
Tssr117816 12 111445188 to 111445206 18 - TSS region transcription start site region 117816
Cpgi5147 12 111445217 to 111446275 1058 CpG island CpG island 5147
Tssr117817 12 111445653 to 111445675 22 - TSS region transcription start site region 117817
Tssr115285 12 111445965 to 111445997 32 + TSS region transcription start site region 115285
Tssr115286 12 111446001 to 111446018 17 + TSS region transcription start site region 115286
Tssr115287 12 111446021 to 111446036 15 + TSS region transcription start site region 115287
Tssr115288 12 111449539 to 111449565 26 + TSS region transcription start site region 115288
Tssr115289 12 111449624 to 111449651 27 + TSS region transcription start site region 115289
Tssr115290 12 111449838 to 111449853 15 + TSS region transcription start site region 115290
Tssr115291 12 111449889 to 111449894 5 + TSS region transcription start site region 115291
Tssr115292 12 111450513 to 111450523 10 + TSS region transcription start site region 115292
Tssr115293 12 111451855 to 111451877 22 + TSS region transcription start site region 115293
Tssr115294 12 111451979 to 111451988 9 + TSS region transcription start site region 115294
Tssr115295 12 111452064 to 111452083 19 + TSS region transcription start site region 115295
Tssr115296 12 111452093 to 111452104 11 + TSS region transcription start site region 115296
Tssr115297 12 111452106 to 111452127 21 + TSS region transcription start site region 115297
Tssr115298 12 111452135 to 111452209 74 + TSS region transcription start site region 115298
Tssr115299 12 111452210 to 111452245 35 + TSS region transcription start site region 115299
Tssr115300 12 111452246 to 111452262 16 + TSS region transcription start site region 115300
Tssr115301 12 111452302 to 111452328 26 + TSS region transcription start site region 115301
Tssr115302 12 111452337 to 111452353 16 + TSS region transcription start site region 115302
Tssr115303 12 111452445 to 111452486 41 + TSS region transcription start site region 115303
Tssr115304 12 111453748 to 111453758 10 + TSS region transcription start site region 115304
Tssr115305 12 111453899 to 111453911 12 + TSS region transcription start site region 115305
Tssr117818 12 111454141 to 111454160 19 - TSS region transcription start site region 117818
Tssr115306 12 111454219 to 111454230 11 + TSS region transcription start site region 115306
Tssr115307 12 111454245 to 111454277 32 + TSS region transcription start site region 115307
Tssr115308 12 111454285 to 111454297 12 + TSS region transcription start site region 115308
Tssr115309 12 111454304 to 111454326 22 + TSS region transcription start site region 115309
Tssr115310 12 111454372 to 111454398 26 + TSS region transcription start site region 115310
Tssr115311 12 111454411 to 111454423 12 + TSS region transcription start site region 115311
Tssr115312 12 111454430 to 111454441 11 + TSS region transcription start site region 115312
Tssr115313 12 111454443 to 111454461 18 + TSS region transcription start site region 115313
Tssr115314 12 111454469 to 111454481 12 + TSS region transcription start site region 115314
Tssr115315 12 111454664 to 111454675 11 + TSS region transcription start site region 115315
Tssr117819 12 111455008 to 111455017 9 - TSS region transcription start site region 117819
Tssr117820 12 111458643 to 111458654 11 - TSS region transcription start site region 117820
Gm266 12 111484609 to 111485823 1214 - protein coding gene predicted gene 266
Cpgi5148 12 111485016 to 111486431 1415 CpG island CpG island 5148
Tssr117821 12 111485773 to 111485804 31 - TSS region transcription start site region 117821
Tssr117822 12 111485808 to 111485826 18 - TSS region transcription start site region 117822
Tssr117823 12 111485976 to 111486001 25 - TSS region transcription start site region 117823
Tssr117824 12 111486088 to 111486108 20 - TSS region transcription start site region 117824
Gm40578 12 111492424 to 111505252 12828 - antisense lncRNA gene predicted gene, 40578
Tssr117825 12 111500836 to 111500850 14 - TSS region transcription start site region 117825
Cpgi5149 12 111504830 to 111505107 277 CpG island CpG island 5149
Tssr117826 12 111505052 to 111505069 17 - TSS region transcription start site region 117826
Tssr117827 12 111515731 to 111515733 2 - TSS region transcription start site region 117827
Tssr115316 12 111535652 to 111535660 8 + TSS region transcription start site region 115316
Tssr115317 12 111536041 to 111536046 5 + TSS region transcription start site region 115317
Tssr115318 12 111536073 to 111536111 38 + TSS region transcription start site region 115318
Tssr115319 12 111537192 to 111537205 13 + TSS region transcription start site region 115319
Cpgi5150 12 111537447 to 111539371 1924 CpG island CpG island 5150
Tssr117828 12 111537917 to 111537956 39 - TSS region transcription start site region 117828
Eif5 12 111538101 to 111546753 8652 + protein coding gene eukaryotic translation initiation factor 5
Tssr115320 12 111538149 to 111538243 94 + TSS region transcription start site region 115320
Tssr115321 12 111538264 to 111538278 14 + TSS region transcription start site region 115321
Tssr115322 12 111538331 to 111538375 44 + TSS region transcription start site region 115322
Tssr115323 12 111538469 to 111538482 13 + TSS region transcription start site region 115323
Tssr117829 12 111538579 to 111538606 27 - TSS region transcription start site region 117829
Tssr115324 12 111538785 to 111538804 19 + TSS region transcription start site region 115324
Tssr115325 12 111538819 to 111538874 55 + TSS region transcription start site region 115325
Tssr115326 12 111539434 to 111539447 13 + TSS region transcription start site region 115326
Tssr115327 12 111540213 to 111540227 14 + TSS region transcription start site region 115327
Snora28 12 111540946 to 111541067 121 + snoRNA gene small nucleolar RNA, H/ACA box 28
Tssr115328 12 111542172 to 111542201 29 + TSS region transcription start site region 115328
Tssr115329 12 111543659 to 111543692 33 + TSS region transcription start site region 115329
Tssr115330 12 111544997 to 111545028 31 + TSS region transcription start site region 115330
Tssr115331 12 111545327 to 111545345 18 + TSS region transcription start site region 115331
Tssr115332 12 111548062 to 111548066 4 + TSS region transcription start site region 115332
Gm48248 12 111558778 to 111559010 232 - pseudogene predicted gene, 48248
2810029C07Rik 12 111572317 to 111574402 2085 - bidirectional promoter lncRNA gene RIKEN cDNA 2810029C07 gene
Cpgi5151 12 111574057 to 111575771 1714 CpG island CpG island 5151
Tssr117830 12 111574309 to 111574342 33 - TSS region transcription start site region 117830
Tssr117831 12 111574384 to 111574405 21 - TSS region transcription start site region 117831
Tssr115333 12 111574491 to 111574542 51 + TSS region transcription start site region 115333
Mark3 12 111574523 to 111656221 81698 + protein coding gene MAP/microtubule affinity regulating kinase 3
Tssr115334 12 111583624 to 111583629 5 + TSS region transcription start site region 115334
Tssr115335 12 111583640 to 111583654 14 + TSS region transcription start site region 115335