Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:110536420-111419082

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppp2r5c 12 110447179 to 110583075 135896 + protein coding gene protein phosphatase 2, regulatory subunit B', gamma
Cpgi5118 12 110590890 to 110592190 1300 CpG island CpG island 5118
B930059L03Rik 12 110591374 to 110592679 1305 + lincRNA gene RIKEN cDNA B930059L03 gene
Tssr117782 12 110591586 to 110591608 22 - TSS region transcription start site region 117782
Tssr115218 12 110591733 to 110591791 58 + TSS region transcription start site region 115218
Gm35558 12 110596608 to 110601372 4764 - lincRNA gene predicted gene, 35558
Cpgi5119 12 110601194 to 110602226 1032 CpG island CpG island 5119
Tssr115219 12 110601386 to 110601397 11 + TSS region transcription start site region 115219
Tssr115220 12 110601439 to 110601450 11 + TSS region transcription start site region 115220
Dync1h1 12 110601452 to 110666945 65493 + protein coding gene dynein cytoplasmic 1 heavy chain 1
Tssr115221 12 110601459 to 110601477 18 + TSS region transcription start site region 115221
Tssr115222 12 110601487 to 110601498 11 + TSS region transcription start site region 115222
Tssr117783 12 110601941 to 110601972 31 - TSS region transcription start site region 117783
Tssr115223 12 110609344 to 110609361 17 + TSS region transcription start site region 115223
Tssr115224 12 110615467 to 110615469 2 + TSS region transcription start site region 115224
Tssr115225 12 110628239 to 110628255 16 + TSS region transcription start site region 115225
Tssr115226 12 110628771 to 110628791 20 + TSS region transcription start site region 115226
Gm17111 12 110664892 to 110665408 516 - antisense lncRNA gene predicted gene 17111
1700001K19Rik 12 110667688 to 110682619 14931 - protein coding gene RIKEN cDNA 1700001K19 gene
Gm27299 12 110674100 to 110674202 102 + miRNA gene predicted gene, 27299
Tssr117784 12 110682557 to 110682564 7 - TSS region transcription start site region 117784
Tssr117785 12 110682606 to 110682623 17 - TSS region transcription start site region 117785
Hsp90aa1 12 110691036 to 110696395 5359 - protein coding gene heat shock protein 90, alpha (cytosolic), class A member 1
Tssr115227 12 110694177 to 110694185 8 + TSS region transcription start site region 115227
Tssr115228 12 110694259 to 110694281 22 + TSS region transcription start site region 115228
Tssr115229 12 110694603 to 110694637 34 + TSS region transcription start site region 115229
Cpgi5120 12 110695659 to 110697141 1482 CpG island CpG island 5120
Tssr117786 12 110695764 to 110695808 44 - TSS region transcription start site region 117786
Tssr117787 12 110695823 to 110695859 36 - TSS region transcription start site region 117787
Tssr117788 12 110695860 to 110695876 16 - TSS region transcription start site region 117788
Tssr115230 12 110695904 to 110695914 10 + TSS region transcription start site region 115230
Tssr115231 12 110695918 to 110695950 32 + TSS region transcription start site region 115231
4932703K07Rik 12 110696003 to 110697115 1112 unclassified gene RIKEN cDNA 4932703K07 gene
Tssr117789 12 110696248 to 110696262 14 - TSS region transcription start site region 117789
Tssr117790 12 110696309 to 110696319 10 - TSS region transcription start site region 117790
Tssr117791 12 110696332 to 110696418 86 - TSS region transcription start site region 117791
Tssr117792 12 110696434 to 110696447 13 - TSS region transcription start site region 117792
Tssr115232 12 110696593 to 110696635 42 + TSS region transcription start site region 115232
Tssr115233 12 110699054 to 110699104 50 + TSS region transcription start site region 115233
Tssr117793 12 110702642 to 110702670 28 - TSS region transcription start site region 117793
Cpgi5121 12 110706766 to 110706920 154 CpG island CpG island 5121
4930421J07Rik 12 110734575 to 110740238 5663 unclassified gene RIKEN cDNA 4930421J07 gene
Cpgi5122 12 110737387 to 110738872 1485 CpG island CpG island 5122
Wdr20 12 110737944 to 110804238 66294 + protein coding gene WD repeat domain 20
Tssr115234 12 110737983 to 110738024 41 + TSS region transcription start site region 115234
Tssr115235 12 110738087 to 110738099 12 + TSS region transcription start site region 115235
2900016J10Rik 12 110798362 to 110799061 699 unclassified gene RIKEN cDNA 2900016J10 gene
Mok 12 110807798 to 110840939 33141 - protein coding gene MOK protein kinase
Tssr117794 12 110815019 to 110815047 28 - TSS region transcription start site region 117794
Tssr117795 12 110839078 to 110839096 18 - TSS region transcription start site region 117795
Cpgi5123 12 110840390 to 110841165 775 CpG island CpG island 5123
Tssr117796 12 110840850 to 110840861 11 - TSS region transcription start site region 117796
Tssr117797 12 110840905 to 110840950 45 - TSS region transcription start site region 117797
4921507G05Rik 12 110840962 to 110843087 2125 + bidirectional promoter lncRNA gene RIKEN cDNA 4921507G05 gene
Tssr115236 12 110841021 to 110841037 16 + TSS region transcription start site region 115236
Gm26912 12 110842276 to 110845216 2940 - lincRNA gene predicted gene, 26912
Cpgi5124 12 110843767 to 110844151 384 CpG island CpG island 5124
Cpgi5125 12 110844589 to 110845787 1198 CpG island CpG island 5125
Tssr117798 12 110845184 to 110845216 32 - TSS region transcription start site region 117798
n-TIaat6 12 110845338 to 110845411 73 + tRNA gene nuclear encoded tRNA isoleucine 6 (anticodon AAT)
Cpgi5126 12 110849897 to 110851315 1418 CpG island CpG island 5126
Zfp839 12 110850253 to 110869996 19743 + protein coding gene zinc finger protein 839
Tssr115237 12 110850273 to 110850302 29 + TSS region transcription start site region 115237
Tssr115238 12 110850304 to 110850325 21 + TSS region transcription start site region 115238
Mpc1-ps 12 110858565 to 110858894 329 - pseudogene mitochondrial pyruvate carrier 1, pseudogene
Tssr117799 12 110858911 to 110858945 34 - TSS region transcription start site region 117799
Cinp 12 110872610 to 110889145 16535 - protein coding gene cyclin-dependent kinase 2 interacting protein
Gm48405 12 110885935 to 110888157 2222 - unclassified gene predicted gene, 48405
Cpgi5127 12 110888471 to 110889974 1503 CpG island CpG island 5127
Tssr117800 12 110889087 to 110889118 31 - TSS region transcription start site region 117800
Tssr117801 12 110889119 to 110889144 25 - TSS region transcription start site region 117801
Tssr115239 12 110889231 to 110889305 74 + TSS region transcription start site region 115239
Tecpr2 12 110889264 to 110972394 83130 + protein coding gene tectonin beta-propeller repeat containing 2
Tssr117802 12 110889773 to 110889804 31 - TSS region transcription start site region 117802
Tssr115240 12 110898077 to 110898081 4 + TSS region transcription start site region 115240
Rps19-ps6 12 110898114 to 110898551 437 + pseudogene ribosomal protein S19, pseudogene 6
Tssr115241 12 110954193 to 110954197 4 + TSS region transcription start site region 115241
Gm40897 12 110957693 to 110959639 1946 + lncRNA gene predicted gene, 40897
Ankrd9 12 110975353 to 110979040 3687 - protein coding gene ankyrin repeat domain 9
Cpgi5128 12 110976627 to 110977654 1027 CpG island CpG island 5128
Cpgi5129 12 110978243 to 110979579 1336 CpG island CpG island 5129
Tssr117803 12 110978620 to 110978643 23 - TSS region transcription start site region 117803
Tssr117804 12 110978943 to 110978956 13 - TSS region transcription start site region 117804
Tssr117805 12 110978964 to 110978979 15 - TSS region transcription start site region 117805
Tssr117806 12 110978981 to 110979028 47 - TSS region transcription start site region 117806
Tssr3954 12 110985405 to 110985417 12 + TSS region transcription start site region 3954
Gm48630 12 110985984 to 110987118 1134 - unclassified gene predicted gene, 48630
Tssr117807 12 110987104 to 110987110 6 - TSS region transcription start site region 117807
Tssr117808 12 110987130 to 110987145 15 - TSS region transcription start site region 117808
Cpgi5130 12 110991511 to 110991805 294 CpG island CpG island 5130
Tssr115242 12 110991599 to 110991601 2 + TSS region transcription start site region 115242
Cpgi5131 12 110992029 to 110992906 877 CpG island CpG island 5131
6030440G07Rik 12 110994398 to 111013869 19471 + lincRNA gene RIKEN cDNA 6030440G07 gene
Cpgi5132 12 111007946 to 111008143 197 CpG island CpG island 5132
Gm48631 12 111017444 to 111018402 958 - unclassified gene predicted gene, 48631
Gm35846 12 111028352 to 111034200 5848 + lncRNA gene predicted gene, 35846
Tssr115243 12 111029102 to 111029105 3 + TSS region transcription start site region 115243
Gm46380 12 111034502 to 111038223 3721 + lncRNA gene predicted gene, 46380
Cpgi5133 12 111038274 to 111040465 2191 CpG island CpG island 5133
Tssr115244 12 111039334 to 111039400 66 + TSS region transcription start site region 115244
Rcor1 12 111039351 to 111115901 76550 + protein coding gene REST corepressor 1
Tssr115245 12 111040833 to 111040839 6 + TSS region transcription start site region 115245
Gm46379 12 111067764 to 111068028 264 - pseudogene predicted gene, 46379
Tssr115246 12 111067891 to 111067913 22 + TSS region transcription start site region 115246
Tssr115247 12 111076507 to 111076511 4 + TSS region transcription start site region 115247
Gm10158 12 111079468 to 111081423 1955 unclassified gene predicted gene 10158
Gm48632 12 111091200 to 111093941 2741 + unclassified gene predicted gene, 48632
Tssr115248 12 111152018 to 111152019 1 + TSS region transcription start site region 115248
4930595D18Rik 12 111159850 to 111184491 24641 - protein coding gene RIKEN cDNA 4930595D18 gene
Tssr115249 12 111160190 to 111160201 11 + TSS region transcription start site region 115249
Tssr115250 12 111160216 to 111160227 11 + TSS region transcription start site region 115250
Tssr115251 12 111160263 to 111160272 9 + TSS region transcription start site region 115251
Cpgi5134 12 111165579 to 111167282 1703 CpG island CpG island 5134
Tssr115252 12 111166349 to 111166397 48 + TSS region transcription start site region 115252
Traf3 12 111166370 to 111267153 100783 + protein coding gene TNF receptor-associated factor 3
Tssr115253 12 111166413 to 111166471 58 + TSS region transcription start site region 115253
Tssr115254 12 111166485 to 111166520 35 + TSS region transcription start site region 115254
Tssr115255 12 111166536 to 111166547 11 + TSS region transcription start site region 115255
Dps2 12 111179630 to 111179755 125 QTL delta power in slow-wave sleep 2
D12Mit280 12 111179630 to 111179755 125 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 280
Tssr115256 12 111198509 to 111198540 31 + TSS region transcription start site region 115256
Tssr115257 12 111202765 to 111202783 18 + TSS region transcription start site region 115257
Cpgi5135 12 111271032 to 111272060 1028 CpG island CpG island 5135
Tssr115258 12 111271089 to 111271121 32 + TSS region transcription start site region 115258
Amn 12 111271096 to 111276426 5330 + protein coding gene amnionless
Tssr117809 12 111273029 to 111273034 5 - TSS region transcription start site region 117809
Cpgi5136 12 111273832 to 111276133 2301 CpG island CpG island 5136
Tssr115259 12 111274655 to 111274683 28 + TSS region transcription start site region 115259
A230087F16Rik 12 111284429 to 111292887 8458 + antisense lncRNA gene RIKEN cDNA A230087F16 gene
Cdc42bpb 12 111292976 to 111377718 84742 - protein coding gene CDC42 binding protein kinase beta
Cpgi5137 12 111324366 to 111324860 494 CpG island CpG island 5137
Cpgi5138 12 111360861 to 111361184 323 CpG island CpG island 5138
Cpgi5139 12 111376702 to 111378587 1885 CpG island CpG island 5139
Tssr117810 12 111377438 to 111377502 64 - TSS region transcription start site region 117810
Tssr117811 12 111377585 to 111377596 11 - TSS region transcription start site region 117811
Tssr117812 12 111377604 to 111377696 92 - TSS region transcription start site region 117812
Tssr117813 12 111377705 to 111377719 14 - TSS region transcription start site region 117813
Tssr117814 12 111377786 to 111377799 13 - TSS region transcription start site region 117814
Cpgi5140 12 111406509 to 111407129 620 CpG island CpG island 5140
Lbhd2 12 111406809 to 111412090 5281 + protein coding gene LBH domain containing 2
Tssr115260 12 111408518 to 111408557 39 + TSS region transcription start site region 115260
Cpgi5141 12 111413344 to 111413668 324 CpG island CpG island 5141
Exoc3l4 12 111417430 to 111431680 14250 + protein coding gene exocyst complex component 3-like 4
Tssr115261 12 111417451 to 111417467 16 + TSS region transcription start site region 115261
Tssr115262 12 111417486 to 111417493 7 + TSS region transcription start site region 115262
Tssr115263 12 111417601 to 111417679 78 + TSS region transcription start site region 115263