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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:110484259-110904281

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppp2r5c 12 110447179 to 110583075 135896 + protein coding gene protein phosphatase 2, regulatory subunit B', gamma
Gm19605 12 110474511 to 110486208 11697 - lncRNA gene predicted gene, 19605
Cpgi5117 12 110485367 to 110485534 167 CpG island CpG island 5117
Tssr117780 12 110485617 to 110485668 51 - TSS region transcription start site region 117780
Tssr115210 12 110485710 to 110485755 45 + TSS region transcription start site region 115210
Tssr115211 12 110485789 to 110485806 17 + TSS region transcription start site region 115211
Tssr117781 12 110486179 to 110486190 11 - TSS region transcription start site region 117781
Tssr115212 12 110486312 to 110486333 21 + TSS region transcription start site region 115212
Tssr115213 12 110497614 to 110497626 12 + TSS region transcription start site region 115213
Tssr115214 12 110497646 to 110497688 42 + TSS region transcription start site region 115214
Tssr115215 12 110499415 to 110499468 53 + TSS region transcription start site region 115215
Tssr115216 12 110500804 to 110500808 4 + TSS region transcription start site region 115216
D12Mit141 12 110503125 to 110503260 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 141
Tssr115217 12 110516208 to 110516213 5 + TSS region transcription start site region 115217
Cpgi5118 12 110590890 to 110592190 1300 CpG island CpG island 5118
B930059L03Rik 12 110591374 to 110592679 1305 + lincRNA gene RIKEN cDNA B930059L03 gene
Tssr117782 12 110591586 to 110591608 22 - TSS region transcription start site region 117782
Tssr115218 12 110591733 to 110591791 58 + TSS region transcription start site region 115218
Gm35558 12 110596608 to 110601372 4764 - lincRNA gene predicted gene, 35558
Cpgi5119 12 110601194 to 110602226 1032 CpG island CpG island 5119
Tssr115219 12 110601386 to 110601397 11 + TSS region transcription start site region 115219
Tssr115220 12 110601439 to 110601450 11 + TSS region transcription start site region 115220
Dync1h1 12 110601452 to 110666945 65493 + protein coding gene dynein cytoplasmic 1 heavy chain 1
Tssr115221 12 110601459 to 110601477 18 + TSS region transcription start site region 115221
Tssr115222 12 110601487 to 110601498 11 + TSS region transcription start site region 115222
Tssr117783 12 110601941 to 110601972 31 - TSS region transcription start site region 117783
Tssr115223 12 110609344 to 110609361 17 + TSS region transcription start site region 115223
Tssr115224 12 110615467 to 110615469 2 + TSS region transcription start site region 115224
Tssr115225 12 110628239 to 110628255 16 + TSS region transcription start site region 115225
Tssr115226 12 110628771 to 110628791 20 + TSS region transcription start site region 115226
Gm17111 12 110664892 to 110665408 516 - antisense lncRNA gene predicted gene 17111
1700001K19Rik 12 110667688 to 110682619 14931 - protein coding gene RIKEN cDNA 1700001K19 gene
Gm27299 12 110674100 to 110674202 102 + miRNA gene predicted gene, 27299
Tssr117784 12 110682557 to 110682564 7 - TSS region transcription start site region 117784
Tssr117785 12 110682606 to 110682623 17 - TSS region transcription start site region 117785
Hsp90aa1 12 110691036 to 110696395 5359 - protein coding gene heat shock protein 90, alpha (cytosolic), class A member 1
Tssr115227 12 110694177 to 110694185 8 + TSS region transcription start site region 115227
Tssr115228 12 110694259 to 110694281 22 + TSS region transcription start site region 115228
Tssr115229 12 110694603 to 110694637 34 + TSS region transcription start site region 115229
Cpgi5120 12 110695659 to 110697141 1482 CpG island CpG island 5120
Tssr117786 12 110695764 to 110695808 44 - TSS region transcription start site region 117786
Tssr117787 12 110695823 to 110695859 36 - TSS region transcription start site region 117787
Tssr117788 12 110695860 to 110695876 16 - TSS region transcription start site region 117788
Tssr115230 12 110695904 to 110695914 10 + TSS region transcription start site region 115230
Tssr115231 12 110695918 to 110695950 32 + TSS region transcription start site region 115231
4932703K07Rik 12 110696003 to 110697115 1112 unclassified gene RIKEN cDNA 4932703K07 gene
Tssr117789 12 110696248 to 110696262 14 - TSS region transcription start site region 117789
Tssr117790 12 110696309 to 110696319 10 - TSS region transcription start site region 117790
Tssr117791 12 110696332 to 110696418 86 - TSS region transcription start site region 117791
Tssr117792 12 110696434 to 110696447 13 - TSS region transcription start site region 117792
Tssr115232 12 110696593 to 110696635 42 + TSS region transcription start site region 115232
Tssr115233 12 110699054 to 110699104 50 + TSS region transcription start site region 115233
Tssr117793 12 110702642 to 110702670 28 - TSS region transcription start site region 117793
Cpgi5121 12 110706766 to 110706920 154 CpG island CpG island 5121
4930421J07Rik 12 110734575 to 110740238 5663 unclassified gene RIKEN cDNA 4930421J07 gene
Cpgi5122 12 110737387 to 110738872 1485 CpG island CpG island 5122
Wdr20 12 110737944 to 110804238 66294 + protein coding gene WD repeat domain 20
Tssr115234 12 110737983 to 110738024 41 + TSS region transcription start site region 115234
Tssr115235 12 110738087 to 110738099 12 + TSS region transcription start site region 115235
2900016J10Rik 12 110798362 to 110799061 699 unclassified gene RIKEN cDNA 2900016J10 gene
Mok 12 110807798 to 110840939 33141 - protein coding gene MOK protein kinase
Tssr117794 12 110815019 to 110815047 28 - TSS region transcription start site region 117794
Tssr117795 12 110839078 to 110839096 18 - TSS region transcription start site region 117795
Cpgi5123 12 110840390 to 110841165 775 CpG island CpG island 5123
Tssr117796 12 110840850 to 110840861 11 - TSS region transcription start site region 117796
Tssr117797 12 110840905 to 110840950 45 - TSS region transcription start site region 117797
4921507G05Rik 12 110840962 to 110843087 2125 + bidirectional promoter lncRNA gene RIKEN cDNA 4921507G05 gene
Tssr115236 12 110841021 to 110841037 16 + TSS region transcription start site region 115236
Gm26912 12 110842276 to 110845216 2940 - lincRNA gene predicted gene, 26912
Cpgi5124 12 110843767 to 110844151 384 CpG island CpG island 5124
Cpgi5125 12 110844589 to 110845787 1198 CpG island CpG island 5125
Tssr117798 12 110845184 to 110845216 32 - TSS region transcription start site region 117798
n-TIaat6 12 110845338 to 110845411 73 + tRNA gene nuclear encoded tRNA isoleucine 6 (anticodon AAT)
Cpgi5126 12 110849897 to 110851315 1418 CpG island CpG island 5126
Zfp839 12 110850253 to 110869996 19743 + protein coding gene zinc finger protein 839
Tssr115237 12 110850273 to 110850302 29 + TSS region transcription start site region 115237
Tssr115238 12 110850304 to 110850325 21 + TSS region transcription start site region 115238
Mpc1-ps 12 110858565 to 110858894 329 - pseudogene mitochondrial pyruvate carrier 1, pseudogene
Tssr117799 12 110858911 to 110858945 34 - TSS region transcription start site region 117799
Cinp 12 110872610 to 110889145 16535 - protein coding gene cyclin-dependent kinase 2 interacting protein
Gm48405 12 110885935 to 110888157 2222 - unclassified gene predicted gene, 48405
Cpgi5127 12 110888471 to 110889974 1503 CpG island CpG island 5127
Tssr117800 12 110889087 to 110889118 31 - TSS region transcription start site region 117800
Tssr117801 12 110889119 to 110889144 25 - TSS region transcription start site region 117801
Tssr115239 12 110889231 to 110889305 74 + TSS region transcription start site region 115239
Tecpr2 12 110889264 to 110972394 83130 + protein coding gene tectonin beta-propeller repeat containing 2
Tssr117802 12 110889773 to 110889804 31 - TSS region transcription start site region 117802
Tssr115240 12 110898077 to 110898081 4 + TSS region transcription start site region 115240
Rps19-ps6 12 110898114 to 110898551 437 + pseudogene ribosomal protein S19, pseudogene 6