Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:110028048-110528129

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40574 12 110024685 to 110036624 11939 + lncRNA gene predicted gene, 40574
Gm34719 12 110046686 to 110086423 39737 - lincRNA gene predicted gene, 34719
Gm47187 12 110062270 to 110062498 228 + pseudogene predicted gene, 47187
D12Mit262 12 110067414 to 110067535 121 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 262
Gm47188 12 110083820 to 110085180 1360 + unclassified gene predicted gene, 47188
Tssr117770 12 110086377 to 110086393 16 - TSS region transcription start site region 117770
Tssr117771 12 110087936 to 110087980 44 - TSS region transcription start site region 117771
Tssr3953 12 110088807 to 110088808 1 + TSS region transcription start site region 3953
3110009F21Rik 12 110151654 to 110158073 6419 - lincRNA gene RIKEN cDNA 3110009F21 gene
Gm34785 12 110177956 to 110183644 5688 - lincRNA gene predicted gene, 34785
Cpgi5109 12 110187394 to 110189707 2313 CpG island CpG island 5109
Gm40575 12 110203651 to 110210776 7125 + lncRNA gene predicted gene, 40575
Gm34895 12 110208962 to 110215536 6574 - lncRNA gene predicted gene, 34895
Gm40576 12 110225515 to 110236362 10847 - lincRNA gene predicted gene, 40576
4930425K24Rik 12 110236492 to 110238634 2142 + unclassified gene RIKEN cDNA 4930425K24 gene
Dio3os 12 110275384 to 110278068 2684 - bidirectional promoter lncRNA gene deiodinase, iodothyronine type III, opposite strand
Cpgi5110 12 110277278 to 110280914 3636 CpG island CpG island 5110
Mir1247 12 110278048 to 110278129 81 - miRNA gene microRNA 1247
Tssr117772 12 110278932 to 110278956 24 - TSS region transcription start site region 117772
Tssr117773 12 110278958 to 110278991 33 - TSS region transcription start site region 117773
Tssr115195 12 110279228 to 110279231 3 + TSS region transcription start site region 115195
Dio3 12 110279230 to 110281097 1867 + protein coding gene deiodinase, iodothyronine type III
Cpgi5111 12 110281769 to 110281924 155 CpG island CpG island 5111
D12Mit133 12 110298027 to 110298139 112 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 133
Abmm 12 110298027 to 110298139 112 QTL antibody mediated myocarditis
Gm6988 12 110315990 to 110316364 374 + pseudogene predicted gene 6988
Gm9063 12 110319592 to 110320173 581 - pseudogene predicted gene 9063
Cpgi5112 12 110319777 to 110320176 399 CpG island CpG island 5112
Gm47195 12 110325385 to 110325721 336 + pseudogene predicted gene, 47195
Cpgi5113 12 110373440 to 110373819 379 CpG island CpG island 5113
Tssr115196 12 110375513 to 110375517 4 + TSS region transcription start site region 115196
Tssr117774 12 110393572 to 110393613 41 - TSS region transcription start site region 117774
Cpgi5114 12 110400233 to 110400456 223 CpG island CpG island 5114
Gm40577 12 110405601 to 110418064 12463 - lncRNA gene predicted gene, 40577
Cpgi5115 12 110427809 to 110428263 454 CpG island CpG island 5115
Tssr117775 12 110435029 to 110435035 6 - TSS region transcription start site region 117775
Tssr115197 12 110444686 to 110444697 11 + TSS region transcription start site region 115197
Tssr115198 12 110444716 to 110444748 32 + TSS region transcription start site region 115198
Cpgi5116 12 110446271 to 110447774 1503 CpG island CpG island 5116
Tssr115199 12 110447088 to 110447123 35 + TSS region transcription start site region 115199
Tssr115200 12 110447151 to 110447188 37 + TSS region transcription start site region 115200
Ppp2r5c 12 110447179 to 110583075 135896 + protein coding gene protein phosphatase 2, regulatory subunit B', gamma
Tssr115201 12 110447202 to 110447207 5 + TSS region transcription start site region 115201
Tssr115202 12 110447212 to 110447230 18 + TSS region transcription start site region 115202
Tssr115203 12 110447243 to 110447259 16 + TSS region transcription start site region 115203
Tssr115204 12 110460760 to 110460773 13 + TSS region transcription start site region 115204
Tssr115205 12 110463901 to 110463914 13 + TSS region transcription start site region 115205
Tssr115206 12 110463919 to 110463932 13 + TSS region transcription start site region 115206
9430099N05Rik 12 110471056 to 110472618 1562 unclassified non-coding RNA gene RIKEN cDNA 9430099N05 gene
Tssr117776 12 110471375 to 110471393 18 - TSS region transcription start site region 117776
Tssr117777 12 110471404 to 110471425 21 - TSS region transcription start site region 117777
Gm19605 12 110474511 to 110486208 11697 - lncRNA gene predicted gene, 19605
Tssr117778 12 110478601 to 110478626 25 - TSS region transcription start site region 117778
Tssr117779 12 110478655 to 110478665 10 - TSS region transcription start site region 117779
Tssr115207 12 110484020 to 110484038 18 + TSS region transcription start site region 115207
Tssr115208 12 110484050 to 110484077 27 + TSS region transcription start site region 115208
Tssr115209 12 110484095 to 110484104 9 + TSS region transcription start site region 115209
Cpgi5117 12 110485367 to 110485534 167 CpG island CpG island 5117
Tssr117780 12 110485617 to 110485668 51 - TSS region transcription start site region 117780
Tssr115210 12 110485710 to 110485755 45 + TSS region transcription start site region 115210
Tssr115211 12 110485789 to 110485806 17 + TSS region transcription start site region 115211
Tssr117781 12 110486179 to 110486190 11 - TSS region transcription start site region 117781
Tssr115212 12 110486312 to 110486333 21 + TSS region transcription start site region 115212
Tssr115213 12 110497614 to 110497626 12 + TSS region transcription start site region 115213
Tssr115214 12 110497646 to 110497688 42 + TSS region transcription start site region 115214
Tssr115215 12 110499415 to 110499468 53 + TSS region transcription start site region 115215
Tssr115216 12 110500804 to 110500808 4 + TSS region transcription start site region 115216
D12Mit141 12 110503125 to 110503260 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 141
Tssr115217 12 110516208 to 110516213 5 + TSS region transcription start site region 115217