Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:109951654-110358073

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vtbt14 12 109969663 to 109969809 146 QTL vertebral trabecular bone trait 14
D12Mit79 12 109969663 to 109969809 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 79
Scrd2 12 109969663 to 113361762 3392099 heritable phenotypic marker smallest common region of deletion 2
Tbqt3 12 109969809 to 35235497 -74734312 QTL tibia bone quality traits 3
Cpgi5108 12 109975705 to 109975898 193 CpG island CpG island 5108
Gm34667 12 109992758 to 110023991 31233 - lincRNA gene predicted gene, 34667
Tssr117766 12 110019881 to 110019898 17 - TSS region transcription start site region 117766
Tssr117767 12 110019956 to 110019964 8 - TSS region transcription start site region 117767
Tssr117768 12 110023811 to 110023838 27 - TSS region transcription start site region 117768
Tssr117769 12 110023845 to 110023877 32 - TSS region transcription start site region 117769
Gm40574 12 110024685 to 110036624 11939 + lncRNA gene predicted gene, 40574
Gm34719 12 110046686 to 110086423 39737 - lincRNA gene predicted gene, 34719
Gm47187 12 110062270 to 110062498 228 + pseudogene predicted gene, 47187
D12Mit262 12 110067414 to 110067535 121 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 262
Gm47188 12 110083820 to 110085180 1360 + unclassified gene predicted gene, 47188
Tssr117770 12 110086377 to 110086393 16 - TSS region transcription start site region 117770
Tssr117771 12 110087936 to 110087980 44 - TSS region transcription start site region 117771
Tssr3953 12 110088807 to 110088808 1 + TSS region transcription start site region 3953
3110009F21Rik 12 110151654 to 110158073 6419 - lincRNA gene RIKEN cDNA 3110009F21 gene
Gm34785 12 110177956 to 110183644 5688 - lincRNA gene predicted gene, 34785
Cpgi5109 12 110187394 to 110189707 2313 CpG island CpG island 5109
Gm40575 12 110203651 to 110210776 7125 + lncRNA gene predicted gene, 40575
Gm34895 12 110208962 to 110215536 6574 - lncRNA gene predicted gene, 34895
Gm40576 12 110225515 to 110236362 10847 - lincRNA gene predicted gene, 40576
4930425K24Rik 12 110236492 to 110238634 2142 + unclassified gene RIKEN cDNA 4930425K24 gene
Dio3os 12 110275384 to 110278068 2684 - bidirectional promoter lncRNA gene deiodinase, iodothyronine type III, opposite strand
Cpgi5110 12 110277278 to 110280914 3636 CpG island CpG island 5110
Mir1247 12 110278048 to 110278129 81 - miRNA gene microRNA 1247
Tssr117772 12 110278932 to 110278956 24 - TSS region transcription start site region 117772
Tssr117773 12 110278958 to 110278991 33 - TSS region transcription start site region 117773
Tssr115195 12 110279228 to 110279231 3 + TSS region transcription start site region 115195
Dio3 12 110279230 to 110281097 1867 + protein coding gene deiodinase, iodothyronine type III
Cpgi5111 12 110281769 to 110281924 155 CpG island CpG island 5111
D12Mit133 12 110298027 to 110298139 112 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 133
Abmm 12 110298027 to 110298139 112 QTL antibody mediated myocarditis
Gm6988 12 110315990 to 110316364 374 + pseudogene predicted gene 6988
Gm9063 12 110319592 to 110320173 581 - pseudogene predicted gene 9063
Cpgi5112 12 110319777 to 110320176 399 CpG island CpG island 5112
Gm47195 12 110325385 to 110325721 336 + pseudogene predicted gene, 47195