Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:109661593-111731635

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477 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rian 12 109603945 to 109661716 57771 + lncRNA gene RNA imprinted and accumulated in nucleus
Gm37899 12 109668869 to 109677585 8716 + unclassified gene predicted gene, 37899
Tssr115170 12 109673365 to 109673369 4 + TSS region transcription start site region 115170
Gm23347 12 109673913 to 109673994 81 + snoRNA gene predicted gene, 23347
Tssr117761 12 109675920 to 109675945 25 - TSS region transcription start site region 117761
AF357428 12 109679945 to 109680013 68 + snoRNA gene snoRNA AF357428
Gm23736 12 109680800 to 109680874 74 + snoRNA gene predicted gene, 23736
AF357341 12 109681519 to 109681593 74 + snoRNA gene snoRNA AF357341
Mir882 12 109682197 to 109682273 76 + miRNA gene microRNA 882
Gm22981 12 109682384 to 109682458 74 + snoRNA gene predicted gene, 22981
Gm25856 12 109682994 to 109683068 74 + snoRNA gene predicted gene, 25856
Gm23787 12 109684962 to 109685034 72 + snoRNA gene predicted gene, 23787
Gm25854 12 109686798 to 109686869 71 + snoRNA gene predicted gene, 25854
Gm22205 12 109688055 to 109688125 70 + snoRNA gene predicted gene, 22205
Gm25224 12 109689477 to 109689544 67 + snoRNA gene predicted gene, 25224
B830012L14Rik 12 109695586 to 109702587 7001 + lincRNA gene RIKEN cDNA B830012L14 gene
Tssr115171 12 109700088 to 109700093 5 + TSS region transcription start site region 115171
Tssr115172 12 109705787 to 109705797 10 + TSS region transcription start site region 115172
Tssr115173 12 109706797 to 109706812 15 + TSS region transcription start site region 115173
Mirc36 12 109709060 to 109747960 38900 complex/cluster/region microRNA cluster 36, including Mir379 through Mir3072
Mirc6 12 109709060 to 109729402 20342 complex/cluster/region microRNA cluster 6, including Mir379 through Mir544
Mir379 12 109709060 to 109709125 65 + miRNA gene microRNA 379
Tssr115174 12 109709123 to 109709126 3 + TSS region transcription start site region 115174
Tssr115175 12 109709606 to 109709610 4 + TSS region transcription start site region 115175
Mir411 12 109710175 to 109710256 81 + miRNA gene microRNA 411
Mir299a 12 109710638 to 109710700 62 + miRNA gene microRNA 299a
Mir299b 12 109710645 to 109710693 48 - miRNA gene microRNA 299b
Gm25750 12 109711779 to 109711890 111 - miRNA gene predicted gene, 25750
Mir380 12 109711803 to 109711863 60 + miRNA gene microRNA 380
Mirc44 12 109712317 to 109712890 573 complex/cluster/region microRNA cluster 44, including Mir1197 through Mir758
Mir1197 12 109712317 to 109712436 119 + miRNA gene microRNA 1197
Mir323 12 109712508 to 109712593 85 + miRNA gene microRNA 323
Mir758 12 109712810 to 109712890 80 + miRNA gene microRNA 758
Mir329 12 109713481 to 109713577 96 + miRNA gene microRNA 329
Mir494 12 109715318 to 109715402 84 + miRNA gene microRNA 494
Mir679 12 109715577 to 109715650 73 + miRNA gene microRNA 679
Mir1193 12 109715671 to 109715791 120 + miRNA gene microRNA 1193
Mir666 12 109717085 to 109717183 98 + miRNA gene microRNA 666
Mirc45 12 109717085 to 109717333 248 complex/cluster/region microRNA cluster 45, including Mir666 through Mir543
Mir543 12 109717258 to 109717333 75 + miRNA gene microRNA 543
Mir495 12 109718754 to 109718816 62 + miRNA gene microRNA 495
Tssr115176 12 109718819 to 109718822 3 + TSS region transcription start site region 115176
Mir667 12 109720006 to 109720097 91 + miRNA gene microRNA 667
Tssr115177 12 109721912 to 109721916 4 + TSS region transcription start site region 115177
Mir376c 12 109722718 to 109722803 85 + miRNA gene microRNA 376c
Mir654 12 109723218 to 109723301 83 + miRNA gene microRNA 654
Tssr3952 12 109723390 to 109723394 4 + TSS region transcription start site region 3952
Mir376b 12 109723458 to 109723539 81 + miRNA gene microRNA 376b
Gm25252 12 109723756 to 109723875 119 - miRNA gene predicted gene, 25252
Mir376a 12 109723781 to 109723848 67 + miRNA gene microRNA 376a
Mir300 12 109724313 to 109724391 78 + miRNA gene microRNA 300
Mir381 12 109726822 to 109726896 74 + miRNA gene microRNA 381
Mir487b 12 109727333 to 109727414 81 + miRNA gene microRNA 487b
Gm44322 12 109728108 to 109728222 114 - miRNA gene predicted gene, 44322
Mir539 12 109728129 to 109728202 73 + miRNA gene microRNA 539
Gm27379 12 109728821 to 109728943 122 + miRNA gene predicted gene, 27379
Mir544 12 109729325 to 109729402 77 + miRNA gene microRNA 544
Mir382 12 109733771 to 109733846 75 + miRNA gene microRNA 382
Mirc7 12 109733771 to 109747960 14189 complex/cluster/region microRNA cluster 7, including Mir382 through Mir3072
Mir134 12 109734139 to 109734209 70 + miRNA gene microRNA 134
Mir668 12 109734732 to 109734797 65 + miRNA gene microRNA 668
Mir485 12 109734902 to 109734974 72 + miRNA gene microRNA 485
Tssr115178 12 109734969 to 109734973 4 + TSS region transcription start site region 115178
Mirg 12 109734981 to 109749458 14477 + lincRNA gene miRNA containing gene
Mir453 12 109735619 to 109735700 81 + miRNA gene microRNA 453
Tssr115179 12 109736735 to 109736739 4 + TSS region transcription start site region 115179
Tssr115180 12 109737365 to 109737369 4 + TSS region transcription start site region 115180
Mir154 12 109738433 to 109738498 65 + miRNA gene microRNA 154
Tssr115181 12 109738891 to 109738905 14 + TSS region transcription start site region 115181
Tssr115182 12 109738911 to 109738926 15 + TSS region transcription start site region 115182
Mir496a 12 109739119 to 109739197 78 + miRNA gene microRNA 496a
Mir377 12 109740510 to 109740577 67 + miRNA gene microRNA 377
Tssr117762 12 109741619 to 109741622 3 - TSS region transcription start site region 117762
Tssr115183 12 109741647 to 109741652 5 + TSS region transcription start site region 115183
Mir541 12 109742409 to 109742498 89 + miRNA gene microRNA 541
Gm24321 12 109743158 to 109743237 79 - miRNA gene predicted gene, 24321
Mir409 12 109743158 to 109743236 78 + miRNA gene microRNA 409
Mirc46 12 109743158 to 109743795 637 complex/cluster/region microRNA cluster 46, including Mir409 through Mir410
Mir412 12 109743289 to 109743368 79 + miRNA gene microRNA 412
Mir369 12 109743418 to 109743496 78 + miRNA gene microRNA 369
Mir410 12 109743715 to 109743795 80 + miRNA gene microRNA 410
Tssr115184 12 109743787 to 109743789 2 + TSS region transcription start site region 115184
Mir3072 12 109747878 to 109747960 82 + miRNA gene microRNA 3072
Tssr115185 12 109748033 to 109748051 18 + TSS region transcription start site region 115185
Tssr115186 12 109748052 to 109748072 20 + TSS region transcription start site region 115186
Tssr115187 12 109748092 to 109748115 23 + TSS region transcription start site region 115187
Tssr115188 12 109748125 to 109748134 9 + TSS region transcription start site region 115188
Igan4 12 109783591 to 119061214 9277623 QTL IgA nephropathy 4
D12Mit16 12 109783591 to 109783845 254 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 16
Nrq10 12 109783591 to 109783845 254 QTL noise-induced hearing loss resistant QTL 10
Nrq10a 12 109783591 to 109783845 254 QTL noise-induced hearing loss resistant QTL 10a
D12Mit16.1 12 109783720 to 109783840 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 16.1
Gm9661 12 109827003 to 109828124 1121 + pseudogene predicted gene 9661
Tssr115189 12 109854062 to 109854063 1 + TSS region transcription start site region 115189
Tssr115190 12 109891965 to 109891968 3 + TSS region transcription start site region 115190
Gm3379 12 109894452 to 109895093 641 - pseudogene predicted gene 3379
Tssr117763 12 109895132 to 109895133 1 - TSS region transcription start site region 117763
4930511J24Rik 12 109911785 to 109913518 1733 + lincRNA gene RIKEN cDNA 4930511J24 gene
Gm34554 12 109921901 to 109947478 25577 + lncRNA gene predicted gene, 34554
Tssr115191 12 109947164 to 109947191 27 + TSS region transcription start site region 115191
Tssr115192 12 109947195 to 109947212 17 + TSS region transcription start site region 115192
Tssr117764 12 109948317 to 109948356 39 - TSS region transcription start site region 117764
Tssr115193 12 109948837 to 109948849 12 + TSS region transcription start site region 115193
Tssr115194 12 109948890 to 109948901 11 + TSS region transcription start site region 115194
Tssr117765 12 109949638 to 109949686 48 - TSS region transcription start site region 117765
Scrd2 12 109969663 to 113361762 3392099 heritable phenotypic marker smallest common region of deletion 2
D12Mit79 12 109969663 to 109969809 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 79
Vtbt14 12 109969663 to 109969809 146 QTL vertebral trabecular bone trait 14
Tbqt3 12 109969809 to 35235497 -74734312 QTL tibia bone quality traits 3
Cpgi5108 12 109975705 to 109975898 193 CpG island CpG island 5108
Gm34667 12 109992758 to 110023991 31233 - lincRNA gene predicted gene, 34667
Tssr117766 12 110019881 to 110019898 17 - TSS region transcription start site region 117766
Tssr117767 12 110019956 to 110019964 8 - TSS region transcription start site region 117767
Tssr117768 12 110023811 to 110023838 27 - TSS region transcription start site region 117768
Tssr117769 12 110023845 to 110023877 32 - TSS region transcription start site region 117769
Gm40574 12 110024685 to 110036624 11939 + lncRNA gene predicted gene, 40574
Gm34719 12 110046686 to 110086423 39737 - lincRNA gene predicted gene, 34719
Gm47187 12 110062270 to 110062498 228 + pseudogene predicted gene, 47187
D12Mit262 12 110067414 to 110067535 121 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 262
Gm47188 12 110083820 to 110085180 1360 + unclassified gene predicted gene, 47188
Tssr117770 12 110086377 to 110086393 16 - TSS region transcription start site region 117770
Tssr117771 12 110087936 to 110087980 44 - TSS region transcription start site region 117771
Tssr3953 12 110088807 to 110088808 1 + TSS region transcription start site region 3953
3110009F21Rik 12 110151654 to 110158073 6419 - lincRNA gene RIKEN cDNA 3110009F21 gene
Gm34785 12 110177956 to 110183644 5688 - lincRNA gene predicted gene, 34785
Cpgi5109 12 110187394 to 110189707 2313 CpG island CpG island 5109
Gm40575 12 110203651 to 110210776 7125 + lncRNA gene predicted gene, 40575
Gm34895 12 110208962 to 110215536 6574 - lncRNA gene predicted gene, 34895
Gm40576 12 110225515 to 110236362 10847 - lincRNA gene predicted gene, 40576
4930425K24Rik 12 110236492 to 110238634 2142 + unclassified gene RIKEN cDNA 4930425K24 gene
Dio3os 12 110275384 to 110278068 2684 - bidirectional promoter lncRNA gene deiodinase, iodothyronine type III, opposite strand
Cpgi5110 12 110277278 to 110280914 3636 CpG island CpG island 5110
Mir1247 12 110278048 to 110278129 81 - miRNA gene microRNA 1247
Tssr117772 12 110278932 to 110278956 24 - TSS region transcription start site region 117772
Tssr117773 12 110278958 to 110278991 33 - TSS region transcription start site region 117773
Tssr115195 12 110279228 to 110279231 3 + TSS region transcription start site region 115195
Dio3 12 110279230 to 110281097 1867 + protein coding gene deiodinase, iodothyronine type III
Cpgi5111 12 110281769 to 110281924 155 CpG island CpG island 5111
D12Mit133 12 110298027 to 110298139 112 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 133
Abmm 12 110298027 to 110298139 112 QTL antibody mediated myocarditis
Gm6988 12 110315990 to 110316364 374 + pseudogene predicted gene 6988
Gm9063 12 110319592 to 110320173 581 - pseudogene predicted gene 9063
Cpgi5112 12 110319777 to 110320176 399 CpG island CpG island 5112
Gm47195 12 110325385 to 110325721 336 + pseudogene predicted gene, 47195
Cpgi5113 12 110373440 to 110373819 379 CpG island CpG island 5113
Tssr115196 12 110375513 to 110375517 4 + TSS region transcription start site region 115196
Tssr117774 12 110393572 to 110393613 41 - TSS region transcription start site region 117774
Cpgi5114 12 110400233 to 110400456 223 CpG island CpG island 5114
Gm40577 12 110405601 to 110418064 12463 - lncRNA gene predicted gene, 40577
Cpgi5115 12 110427809 to 110428263 454 CpG island CpG island 5115
Tssr117775 12 110435029 to 110435035 6 - TSS region transcription start site region 117775
Tssr115197 12 110444686 to 110444697 11 + TSS region transcription start site region 115197
Tssr115198 12 110444716 to 110444748 32 + TSS region transcription start site region 115198
Cpgi5116 12 110446271 to 110447774 1503 CpG island CpG island 5116
Tssr115199 12 110447088 to 110447123 35 + TSS region transcription start site region 115199
Tssr115200 12 110447151 to 110447188 37 + TSS region transcription start site region 115200
Ppp2r5c 12 110447179 to 110583075 135896 + protein coding gene protein phosphatase 2, regulatory subunit B', gamma
Tssr115201 12 110447202 to 110447207 5 + TSS region transcription start site region 115201
Tssr115202 12 110447212 to 110447230 18 + TSS region transcription start site region 115202
Tssr115203 12 110447243 to 110447259 16 + TSS region transcription start site region 115203
Tssr115204 12 110460760 to 110460773 13 + TSS region transcription start site region 115204
Tssr115205 12 110463901 to 110463914 13 + TSS region transcription start site region 115205
Tssr115206 12 110463919 to 110463932 13 + TSS region transcription start site region 115206
9430099N05Rik 12 110471056 to 110472618 1562 unclassified non-coding RNA gene RIKEN cDNA 9430099N05 gene
Tssr117776 12 110471375 to 110471393 18 - TSS region transcription start site region 117776
Tssr117777 12 110471404 to 110471425 21 - TSS region transcription start site region 117777
Gm19605 12 110474511 to 110486208 11697 - lncRNA gene predicted gene, 19605
Tssr117778 12 110478601 to 110478626 25 - TSS region transcription start site region 117778
Tssr117779 12 110478655 to 110478665 10 - TSS region transcription start site region 117779
Tssr115207 12 110484020 to 110484038 18 + TSS region transcription start site region 115207
Tssr115208 12 110484050 to 110484077 27 + TSS region transcription start site region 115208
Tssr115209 12 110484095 to 110484104 9 + TSS region transcription start site region 115209
Cpgi5117 12 110485367 to 110485534 167 CpG island CpG island 5117
Tssr117780 12 110485617 to 110485668 51 - TSS region transcription start site region 117780
Tssr115210 12 110485710 to 110485755 45 + TSS region transcription start site region 115210
Tssr115211 12 110485789 to 110485806 17 + TSS region transcription start site region 115211
Tssr117781 12 110486179 to 110486190 11 - TSS region transcription start site region 117781
Tssr115212 12 110486312 to 110486333 21 + TSS region transcription start site region 115212
Tssr115213 12 110497614 to 110497626 12 + TSS region transcription start site region 115213
Tssr115214 12 110497646 to 110497688 42 + TSS region transcription start site region 115214
Tssr115215 12 110499415 to 110499468 53 + TSS region transcription start site region 115215
Tssr115216 12 110500804 to 110500808 4 + TSS region transcription start site region 115216
D12Mit141 12 110503125 to 110503260 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 141
Tssr115217 12 110516208 to 110516213 5 + TSS region transcription start site region 115217
Cpgi5118 12 110590890 to 110592190 1300 CpG island CpG island 5118
B930059L03Rik 12 110591374 to 110592679 1305 + lincRNA gene RIKEN cDNA B930059L03 gene
Tssr117782 12 110591586 to 110591608 22 - TSS region transcription start site region 117782
Tssr115218 12 110591733 to 110591791 58 + TSS region transcription start site region 115218
Gm35558 12 110596608 to 110601372 4764 - lincRNA gene predicted gene, 35558
Cpgi5119 12 110601194 to 110602226 1032 CpG island CpG island 5119
Tssr115219 12 110601386 to 110601397 11 + TSS region transcription start site region 115219
Tssr115220 12 110601439 to 110601450 11 + TSS region transcription start site region 115220
Dync1h1 12 110601452 to 110666945 65493 + protein coding gene dynein cytoplasmic 1 heavy chain 1
Tssr115221 12 110601459 to 110601477 18 + TSS region transcription start site region 115221
Tssr115222 12 110601487 to 110601498 11 + TSS region transcription start site region 115222
Tssr117783 12 110601941 to 110601972 31 - TSS region transcription start site region 117783
Tssr115223 12 110609344 to 110609361 17 + TSS region transcription start site region 115223
Tssr115224 12 110615467 to 110615469 2 + TSS region transcription start site region 115224
Tssr115225 12 110628239 to 110628255 16 + TSS region transcription start site region 115225
Tssr115226 12 110628771 to 110628791 20 + TSS region transcription start site region 115226