Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:109612317-109812890

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137 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rian 12 109603945 to 109661716 57771 + lncRNA gene RNA imprinted and accumulated in nucleus
Tssr117758 12 109615510 to 109615526 16 - TSS region transcription start site region 117758
Tssr117759 12 109615562 to 109615573 11 - TSS region transcription start site region 117759
Tssr117760 12 109615588 to 109615599 11 - TSS region transcription start site region 117760
Tssr115148 12 109615770 to 109615772 2 + TSS region transcription start site region 115148
Tssr115149 12 109617935 to 109617939 4 + TSS region transcription start site region 115149
Gm23912 12 109618114 to 109618200 86 + miRNA gene predicted gene, 23912
Mir370 12 109618258 to 109618336 78 + miRNA gene microRNA 370
Tssr115150 12 109629072 to 109629083 11 + TSS region transcription start site region 115150
Tssr115151 12 109630093 to 109630106 13 + TSS region transcription start site region 115151
Gm24564 12 109631074 to 109631148 74 + snoRNA gene predicted gene, 24564
Tssr115152 12 109631925 to 109631928 3 + TSS region transcription start site region 115152
Tssr115153 12 109633208 to 109633212 4 + TSS region transcription start site region 115153
Gm23474 12 109633768 to 109633842 74 + snoRNA gene predicted gene, 23474
Tssr115154 12 109636008 to 109636020 12 + TSS region transcription start site region 115154
AF357425 12 109636012 to 109636080 68 + snoRNA gene snoRNA AF357425
Tssr3951 12 109636074 to 109636085 11 + TSS region transcription start site region 3951
Tssr115155 12 109636134 to 109636158 24 + TSS region transcription start site region 115155
Tssr115156 12 109636224 to 109636241 17 + TSS region transcription start site region 115156
Tssr115157 12 109636315 to 109636378 63 + TSS region transcription start site region 115157
Tssr115158 12 109636395 to 109636432 37 + TSS region transcription start site region 115158
Tssr115159 12 109636497 to 109636529 32 + TSS region transcription start site region 115159
Gm26945 12 109640341 to 109642351 2010 + lincRNA gene predicted gene, 26945
Gm24899 12 109641022 to 109641094 72 + snoRNA gene predicted gene, 24899
AF357426 12 109642838 to 109642904 66 + snoRNA gene snoRNA AF357426
Tssr115160 12 109643351 to 109643357 6 + TSS region transcription start site region 115160
Gm23600 12 109643748 to 109643818 70 + snoRNA gene predicted gene, 23600
Tssr115161 12 109645921 to 109645935 14 + TSS region transcription start site region 115161
Tssr115162 12 109646115 to 109646134 19 + TSS region transcription start site region 115162
Gm24895 12 109646129 to 109646202 73 + snoRNA gene predicted gene, 24895
Tssr115163 12 109646436 to 109646458 22 + TSS region transcription start site region 115163
Tssr115164 12 109646460 to 109646474 14 + TSS region transcription start site region 115164
Tssr115165 12 109646549 to 109646553 4 + TSS region transcription start site region 115165
Tssr115166 12 109649531 to 109649537 6 + TSS region transcription start site region 115166
DQ267100 12 109649617 to 109649687 70 + snoRNA gene snoRNA DQ267100
Tssr115167 12 109650156 to 109650161 5 + TSS region transcription start site region 115167
Tssr115168 12 109650661 to 109650675 14 + TSS region transcription start site region 115168
AF357359 12 109650709 to 109650738 29 + snoRNA gene snoRNA AF357359
Tssr115169 12 109650977 to 109650997 20 + TSS region transcription start site region 115169
DQ267101 12 109651424 to 109651495 71 + snoRNA gene snoRNA DQ267101
Gm23508 12 109653033 to 109653104 71 + snoRNA gene predicted gene, 23508
AF357355 12 109654627 to 109654697 70 + snoRNA gene snoRNA AF357355
Gm26922 12 109654627 to 109654698 71 + snoRNA gene predicted gene, 26922
DQ267102 12 109656345 to 109656415 70 + snoRNA gene snoRNA DQ267102
Gm25357 12 109657125 to 109657196 71 + snoRNA gene predicted gene, 25357
Gm27604 12 109658407 to 109658478 71 + snoRNA gene predicted gene, 27604
Gm37899 12 109668869 to 109677585 8716 + unclassified gene predicted gene, 37899
Tssr115170 12 109673365 to 109673369 4 + TSS region transcription start site region 115170
Gm23347 12 109673913 to 109673994 81 + snoRNA gene predicted gene, 23347
Tssr117761 12 109675920 to 109675945 25 - TSS region transcription start site region 117761
AF357428 12 109679945 to 109680013 68 + snoRNA gene snoRNA AF357428
Gm23736 12 109680800 to 109680874 74 + snoRNA gene predicted gene, 23736
AF357341 12 109681519 to 109681593 74 + snoRNA gene snoRNA AF357341
Mir882 12 109682197 to 109682273 76 + miRNA gene microRNA 882
Gm22981 12 109682384 to 109682458 74 + snoRNA gene predicted gene, 22981
Gm25856 12 109682994 to 109683068 74 + snoRNA gene predicted gene, 25856
Gm23787 12 109684962 to 109685034 72 + snoRNA gene predicted gene, 23787
Gm25854 12 109686798 to 109686869 71 + snoRNA gene predicted gene, 25854
Gm22205 12 109688055 to 109688125 70 + snoRNA gene predicted gene, 22205
Gm25224 12 109689477 to 109689544 67 + snoRNA gene predicted gene, 25224
B830012L14Rik 12 109695586 to 109702587 7001 + lincRNA gene RIKEN cDNA B830012L14 gene
Tssr115171 12 109700088 to 109700093 5 + TSS region transcription start site region 115171
Tssr115172 12 109705787 to 109705797 10 + TSS region transcription start site region 115172
Tssr115173 12 109706797 to 109706812 15 + TSS region transcription start site region 115173
Mirc36 12 109709060 to 109747960 38900 complex/cluster/region microRNA cluster 36, including Mir379 through Mir3072
Mir379 12 109709060 to 109709125 65 + miRNA gene microRNA 379
Mirc6 12 109709060 to 109729402 20342 complex/cluster/region microRNA cluster 6, including Mir379 through Mir544
Tssr115174 12 109709123 to 109709126 3 + TSS region transcription start site region 115174
Tssr115175 12 109709606 to 109709610 4 + TSS region transcription start site region 115175
Mir411 12 109710175 to 109710256 81 + miRNA gene microRNA 411
Mir299a 12 109710638 to 109710700 62 + miRNA gene microRNA 299a
Mir299b 12 109710645 to 109710693 48 - miRNA gene microRNA 299b
Gm25750 12 109711779 to 109711890 111 - miRNA gene predicted gene, 25750
Mir380 12 109711803 to 109711863 60 + miRNA gene microRNA 380
Mirc44 12 109712317 to 109712890 573 complex/cluster/region microRNA cluster 44, including Mir1197 through Mir758
Mir1197 12 109712317 to 109712436 119 + miRNA gene microRNA 1197
Mir323 12 109712508 to 109712593 85 + miRNA gene microRNA 323
Mir758 12 109712810 to 109712890 80 + miRNA gene microRNA 758
Mir329 12 109713481 to 109713577 96 + miRNA gene microRNA 329
Mir494 12 109715318 to 109715402 84 + miRNA gene microRNA 494
Mir679 12 109715577 to 109715650 73 + miRNA gene microRNA 679
Mir1193 12 109715671 to 109715791 120 + miRNA gene microRNA 1193
Mir666 12 109717085 to 109717183 98 + miRNA gene microRNA 666
Mirc45 12 109717085 to 109717333 248 complex/cluster/region microRNA cluster 45, including Mir666 through Mir543
Mir543 12 109717258 to 109717333 75 + miRNA gene microRNA 543
Mir495 12 109718754 to 109718816 62 + miRNA gene microRNA 495
Tssr115176 12 109718819 to 109718822 3 + TSS region transcription start site region 115176
Mir667 12 109720006 to 109720097 91 + miRNA gene microRNA 667
Tssr115177 12 109721912 to 109721916 4 + TSS region transcription start site region 115177
Mir376c 12 109722718 to 109722803 85 + miRNA gene microRNA 376c
Mir654 12 109723218 to 109723301 83 + miRNA gene microRNA 654
Tssr3952 12 109723390 to 109723394 4 + TSS region transcription start site region 3952
Mir376b 12 109723458 to 109723539 81 + miRNA gene microRNA 376b
Gm25252 12 109723756 to 109723875 119 - miRNA gene predicted gene, 25252
Mir376a 12 109723781 to 109723848 67 + miRNA gene microRNA 376a
Mir300 12 109724313 to 109724391 78 + miRNA gene microRNA 300
Mir381 12 109726822 to 109726896 74 + miRNA gene microRNA 381
Mir487b 12 109727333 to 109727414 81 + miRNA gene microRNA 487b
Gm44322 12 109728108 to 109728222 114 - miRNA gene predicted gene, 44322
Mir539 12 109728129 to 109728202 73 + miRNA gene microRNA 539
Gm27379 12 109728821 to 109728943 122 + miRNA gene predicted gene, 27379
Mir544 12 109729325 to 109729402 77 + miRNA gene microRNA 544
Mir382 12 109733771 to 109733846 75 + miRNA gene microRNA 382
Mirc7 12 109733771 to 109747960 14189 complex/cluster/region microRNA cluster 7, including Mir382 through Mir3072
Mir134 12 109734139 to 109734209 70 + miRNA gene microRNA 134
Mir668 12 109734732 to 109734797 65 + miRNA gene microRNA 668
Mir485 12 109734902 to 109734974 72 + miRNA gene microRNA 485
Tssr115178 12 109734969 to 109734973 4 + TSS region transcription start site region 115178
Mirg 12 109734981 to 109749458 14477 + lincRNA gene miRNA containing gene
Mir453 12 109735619 to 109735700 81 + miRNA gene microRNA 453
Tssr115179 12 109736735 to 109736739 4 + TSS region transcription start site region 115179
Tssr115180 12 109737365 to 109737369 4 + TSS region transcription start site region 115180
Mir154 12 109738433 to 109738498 65 + miRNA gene microRNA 154
Tssr115181 12 109738891 to 109738905 14 + TSS region transcription start site region 115181
Tssr115182 12 109738911 to 109738926 15 + TSS region transcription start site region 115182
Mir496a 12 109739119 to 109739197 78 + miRNA gene microRNA 496a
Mir377 12 109740510 to 109740577 67 + miRNA gene microRNA 377
Tssr117762 12 109741619 to 109741622 3 - TSS region transcription start site region 117762
Tssr115183 12 109741647 to 109741652 5 + TSS region transcription start site region 115183
Mir541 12 109742409 to 109742498 89 + miRNA gene microRNA 541
Mirc46 12 109743158 to 109743795 637 complex/cluster/region microRNA cluster 46, including Mir409 through Mir410
Mir409 12 109743158 to 109743236 78 + miRNA gene microRNA 409
Gm24321 12 109743158 to 109743237 79 - miRNA gene predicted gene, 24321
Mir412 12 109743289 to 109743368 79 + miRNA gene microRNA 412
Mir369 12 109743418 to 109743496 78 + miRNA gene microRNA 369
Mir410 12 109743715 to 109743795 80 + miRNA gene microRNA 410
Tssr115184 12 109743787 to 109743789 2 + TSS region transcription start site region 115184
Mir3072 12 109747878 to 109747960 82 + miRNA gene microRNA 3072
Tssr115185 12 109748033 to 109748051 18 + TSS region transcription start site region 115185
Tssr115186 12 109748052 to 109748072 20 + TSS region transcription start site region 115186
Tssr115187 12 109748092 to 109748115 23 + TSS region transcription start site region 115187
Tssr115188 12 109748125 to 109748134 9 + TSS region transcription start site region 115188
Igan4 12 109783591 to 119061214 9277623 QTL IgA nephropathy 4
D12Mit16 12 109783591 to 109783845 254 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 16
Nrq10a 12 109783591 to 109783845 254 QTL noise-induced hearing loss resistant QTL 10a
Nrq10 12 109783591 to 109783845 254 QTL noise-induced hearing loss resistant QTL 10
D12Mit16.1 12 109783720 to 109783840 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 16.1