Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:109602164-110292191

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197 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mirc43 12 109586314 to 109611941 25627 complex/cluster/region microRNA cluster 43, including Mir341 through Mir1188
Tssr115139 12 109603013 to 109603024 11 + TSS region transcription start site region 115139
Tssr115140 12 109603038 to 109603067 29 + TSS region transcription start site region 115140
Gm27350 12 109603882 to 109603979 97 + unclassified non-coding RNA gene predicted gene, 27350
Tssr115141 12 109603915 to 109603920 5 + TSS region transcription start site region 115141
Rian 12 109603945 to 109661716 57771 + lncRNA gene RNA imprinted and accumulated in nucleus
Tssr117757 12 109604415 to 109604420 5 - TSS region transcription start site region 117757
Tssr115142 12 109605026 to 109605029 3 + TSS region transcription start site region 115142
Tssr115143 12 109606787 to 109606791 4 + TSS region transcription start site region 115143
Tssr115144 12 109607798 to 109607802 4 + TSS region transcription start site region 115144
Tssr115145 12 109608773 to 109608793 20 + TSS region transcription start site region 115145
Tssr115146 12 109608868 to 109608882 14 + TSS region transcription start site region 115146
Tssr115147 12 109609696 to 109609700 4 + TSS region transcription start site region 115147
Mir341 12 109611500 to 109611595 95 + miRNA gene microRNA 341
Mir1188 12 109611822 to 109611941 119 + miRNA gene microRNA 1188
Tssr117758 12 109615510 to 109615526 16 - TSS region transcription start site region 117758
Tssr117759 12 109615562 to 109615573 11 - TSS region transcription start site region 117759
Tssr117760 12 109615588 to 109615599 11 - TSS region transcription start site region 117760
Tssr115148 12 109615770 to 109615772 2 + TSS region transcription start site region 115148
Tssr115149 12 109617935 to 109617939 4 + TSS region transcription start site region 115149
Gm23912 12 109618114 to 109618200 86 + miRNA gene predicted gene, 23912
Mir370 12 109618258 to 109618336 78 + miRNA gene microRNA 370
Tssr115150 12 109629072 to 109629083 11 + TSS region transcription start site region 115150
Tssr115151 12 109630093 to 109630106 13 + TSS region transcription start site region 115151
Gm24564 12 109631074 to 109631148 74 + snoRNA gene predicted gene, 24564
Tssr115152 12 109631925 to 109631928 3 + TSS region transcription start site region 115152
Tssr115153 12 109633208 to 109633212 4 + TSS region transcription start site region 115153
Gm23474 12 109633768 to 109633842 74 + snoRNA gene predicted gene, 23474
Tssr115154 12 109636008 to 109636020 12 + TSS region transcription start site region 115154
AF357425 12 109636012 to 109636080 68 + snoRNA gene snoRNA AF357425
Tssr3951 12 109636074 to 109636085 11 + TSS region transcription start site region 3951
Tssr115155 12 109636134 to 109636158 24 + TSS region transcription start site region 115155
Tssr115156 12 109636224 to 109636241 17 + TSS region transcription start site region 115156
Tssr115157 12 109636315 to 109636378 63 + TSS region transcription start site region 115157
Tssr115158 12 109636395 to 109636432 37 + TSS region transcription start site region 115158
Tssr115159 12 109636497 to 109636529 32 + TSS region transcription start site region 115159
Gm26945 12 109640341 to 109642351 2010 + lincRNA gene predicted gene, 26945
Gm24899 12 109641022 to 109641094 72 + snoRNA gene predicted gene, 24899
AF357426 12 109642838 to 109642904 66 + snoRNA gene snoRNA AF357426
Tssr115160 12 109643351 to 109643357 6 + TSS region transcription start site region 115160
Gm23600 12 109643748 to 109643818 70 + snoRNA gene predicted gene, 23600
Tssr115161 12 109645921 to 109645935 14 + TSS region transcription start site region 115161
Tssr115162 12 109646115 to 109646134 19 + TSS region transcription start site region 115162
Gm24895 12 109646129 to 109646202 73 + snoRNA gene predicted gene, 24895
Tssr115163 12 109646436 to 109646458 22 + TSS region transcription start site region 115163
Tssr115164 12 109646460 to 109646474 14 + TSS region transcription start site region 115164
Tssr115165 12 109646549 to 109646553 4 + TSS region transcription start site region 115165
Tssr115166 12 109649531 to 109649537 6 + TSS region transcription start site region 115166
DQ267100 12 109649617 to 109649687 70 + snoRNA gene snoRNA DQ267100
Tssr115167 12 109650156 to 109650161 5 + TSS region transcription start site region 115167
Tssr115168 12 109650661 to 109650675 14 + TSS region transcription start site region 115168
AF357359 12 109650709 to 109650738 29 + snoRNA gene snoRNA AF357359
Tssr115169 12 109650977 to 109650997 20 + TSS region transcription start site region 115169
DQ267101 12 109651424 to 109651495 71 + snoRNA gene snoRNA DQ267101
Gm23508 12 109653033 to 109653104 71 + snoRNA gene predicted gene, 23508
Gm26922 12 109654627 to 109654698 71 + snoRNA gene predicted gene, 26922
AF357355 12 109654627 to 109654697 70 + snoRNA gene snoRNA AF357355
DQ267102 12 109656345 to 109656415 70 + snoRNA gene snoRNA DQ267102
Gm25357 12 109657125 to 109657196 71 + snoRNA gene predicted gene, 25357
Gm27604 12 109658407 to 109658478 71 + snoRNA gene predicted gene, 27604
Gm37899 12 109668869 to 109677585 8716 + unclassified gene predicted gene, 37899
Tssr115170 12 109673365 to 109673369 4 + TSS region transcription start site region 115170
Gm23347 12 109673913 to 109673994 81 + snoRNA gene predicted gene, 23347
Tssr117761 12 109675920 to 109675945 25 - TSS region transcription start site region 117761
AF357428 12 109679945 to 109680013 68 + snoRNA gene snoRNA AF357428
Gm23736 12 109680800 to 109680874 74 + snoRNA gene predicted gene, 23736
AF357341 12 109681519 to 109681593 74 + snoRNA gene snoRNA AF357341
Mir882 12 109682197 to 109682273 76 + miRNA gene microRNA 882
Gm22981 12 109682384 to 109682458 74 + snoRNA gene predicted gene, 22981
Gm25856 12 109682994 to 109683068 74 + snoRNA gene predicted gene, 25856
Gm23787 12 109684962 to 109685034 72 + snoRNA gene predicted gene, 23787
Gm25854 12 109686798 to 109686869 71 + snoRNA gene predicted gene, 25854
Gm22205 12 109688055 to 109688125 70 + snoRNA gene predicted gene, 22205
Gm25224 12 109689477 to 109689544 67 + snoRNA gene predicted gene, 25224
B830012L14Rik 12 109695586 to 109702587 7001 + lincRNA gene RIKEN cDNA B830012L14 gene
Tssr115171 12 109700088 to 109700093 5 + TSS region transcription start site region 115171
Tssr115172 12 109705787 to 109705797 10 + TSS region transcription start site region 115172
Tssr115173 12 109706797 to 109706812 15 + TSS region transcription start site region 115173
Mir379 12 109709060 to 109709125 65 + miRNA gene microRNA 379
Mirc6 12 109709060 to 109729402 20342 complex/cluster/region microRNA cluster 6, including Mir379 through Mir544
Mirc36 12 109709060 to 109747960 38900 complex/cluster/region microRNA cluster 36, including Mir379 through Mir3072
Tssr115174 12 109709123 to 109709126 3 + TSS region transcription start site region 115174
Tssr115175 12 109709606 to 109709610 4 + TSS region transcription start site region 115175
Mir411 12 109710175 to 109710256 81 + miRNA gene microRNA 411
Mir299a 12 109710638 to 109710700 62 + miRNA gene microRNA 299a
Mir299b 12 109710645 to 109710693 48 - miRNA gene microRNA 299b
Gm25750 12 109711779 to 109711890 111 - miRNA gene predicted gene, 25750
Mir380 12 109711803 to 109711863 60 + miRNA gene microRNA 380
Mir1197 12 109712317 to 109712436 119 + miRNA gene microRNA 1197
Mirc44 12 109712317 to 109712890 573 complex/cluster/region microRNA cluster 44, including Mir1197 through Mir758
Mir323 12 109712508 to 109712593 85 + miRNA gene microRNA 323
Mir758 12 109712810 to 109712890 80 + miRNA gene microRNA 758
Mir329 12 109713481 to 109713577 96 + miRNA gene microRNA 329
Mir494 12 109715318 to 109715402 84 + miRNA gene microRNA 494
Mir679 12 109715577 to 109715650 73 + miRNA gene microRNA 679
Mir1193 12 109715671 to 109715791 120 + miRNA gene microRNA 1193
Mirc45 12 109717085 to 109717333 248 complex/cluster/region microRNA cluster 45, including Mir666 through Mir543
Mir666 12 109717085 to 109717183 98 + miRNA gene microRNA 666
Mir543 12 109717258 to 109717333 75 + miRNA gene microRNA 543
Mir495 12 109718754 to 109718816 62 + miRNA gene microRNA 495
Tssr115176 12 109718819 to 109718822 3 + TSS region transcription start site region 115176
Mir667 12 109720006 to 109720097 91 + miRNA gene microRNA 667
Tssr115177 12 109721912 to 109721916 4 + TSS region transcription start site region 115177
Mir376c 12 109722718 to 109722803 85 + miRNA gene microRNA 376c
Mir654 12 109723218 to 109723301 83 + miRNA gene microRNA 654
Tssr3952 12 109723390 to 109723394 4 + TSS region transcription start site region 3952
Mir376b 12 109723458 to 109723539 81 + miRNA gene microRNA 376b
Gm25252 12 109723756 to 109723875 119 - miRNA gene predicted gene, 25252
Mir376a 12 109723781 to 109723848 67 + miRNA gene microRNA 376a
Mir300 12 109724313 to 109724391 78 + miRNA gene microRNA 300
Mir381 12 109726822 to 109726896 74 + miRNA gene microRNA 381
Mir487b 12 109727333 to 109727414 81 + miRNA gene microRNA 487b
Gm44322 12 109728108 to 109728222 114 - miRNA gene predicted gene, 44322
Mir539 12 109728129 to 109728202 73 + miRNA gene microRNA 539
Gm27379 12 109728821 to 109728943 122 + miRNA gene predicted gene, 27379
Mir544 12 109729325 to 109729402 77 + miRNA gene microRNA 544
Mirc7 12 109733771 to 109747960 14189 complex/cluster/region microRNA cluster 7, including Mir382 through Mir3072
Mir382 12 109733771 to 109733846 75 + miRNA gene microRNA 382
Mir134 12 109734139 to 109734209 70 + miRNA gene microRNA 134
Mir668 12 109734732 to 109734797 65 + miRNA gene microRNA 668
Mir485 12 109734902 to 109734974 72 + miRNA gene microRNA 485
Tssr115178 12 109734969 to 109734973 4 + TSS region transcription start site region 115178
Mirg 12 109734981 to 109749458 14477 + lincRNA gene miRNA containing gene
Mir453 12 109735619 to 109735700 81 + miRNA gene microRNA 453
Tssr115179 12 109736735 to 109736739 4 + TSS region transcription start site region 115179
Tssr115180 12 109737365 to 109737369 4 + TSS region transcription start site region 115180
Mir154 12 109738433 to 109738498 65 + miRNA gene microRNA 154
Tssr115181 12 109738891 to 109738905 14 + TSS region transcription start site region 115181
Tssr115182 12 109738911 to 109738926 15 + TSS region transcription start site region 115182
Mir496a 12 109739119 to 109739197 78 + miRNA gene microRNA 496a
Mir377 12 109740510 to 109740577 67 + miRNA gene microRNA 377
Tssr117762 12 109741619 to 109741622 3 - TSS region transcription start site region 117762
Tssr115183 12 109741647 to 109741652 5 + TSS region transcription start site region 115183
Mir541 12 109742409 to 109742498 89 + miRNA gene microRNA 541
Mirc46 12 109743158 to 109743795 637 complex/cluster/region microRNA cluster 46, including Mir409 through Mir410
Mir409 12 109743158 to 109743236 78 + miRNA gene microRNA 409
Gm24321 12 109743158 to 109743237 79 - miRNA gene predicted gene, 24321
Mir412 12 109743289 to 109743368 79 + miRNA gene microRNA 412
Mir369 12 109743418 to 109743496 78 + miRNA gene microRNA 369
Mir410 12 109743715 to 109743795 80 + miRNA gene microRNA 410
Tssr115184 12 109743787 to 109743789 2 + TSS region transcription start site region 115184
Mir3072 12 109747878 to 109747960 82 + miRNA gene microRNA 3072
Tssr115185 12 109748033 to 109748051 18 + TSS region transcription start site region 115185
Tssr115186 12 109748052 to 109748072 20 + TSS region transcription start site region 115186
Tssr115187 12 109748092 to 109748115 23 + TSS region transcription start site region 115187
Tssr115188 12 109748125 to 109748134 9 + TSS region transcription start site region 115188
D12Mit16 12 109783591 to 109783845 254 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 16
Nrq10 12 109783591 to 109783845 254 QTL noise-induced hearing loss resistant QTL 10
Igan4 12 109783591 to 119061214 9277623 QTL IgA nephropathy 4
Nrq10a 12 109783591 to 109783845 254 QTL noise-induced hearing loss resistant QTL 10a
D12Mit16.1 12 109783720 to 109783840 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 16.1
Gm9661 12 109827003 to 109828124 1121 + pseudogene predicted gene 9661
Tssr115189 12 109854062 to 109854063 1 + TSS region transcription start site region 115189
Tssr115190 12 109891965 to 109891968 3 + TSS region transcription start site region 115190
Gm3379 12 109894452 to 109895093 641 - pseudogene predicted gene 3379
Tssr117763 12 109895132 to 109895133 1 - TSS region transcription start site region 117763
4930511J24Rik 12 109911785 to 109913518 1733 + lincRNA gene RIKEN cDNA 4930511J24 gene
Gm34554 12 109921901 to 109947478 25577 + lncRNA gene predicted gene, 34554
Tssr115191 12 109947164 to 109947191 27 + TSS region transcription start site region 115191
Tssr115192 12 109947195 to 109947212 17 + TSS region transcription start site region 115192
Tssr117764 12 109948317 to 109948356 39 - TSS region transcription start site region 117764
Tssr115193 12 109948837 to 109948849 12 + TSS region transcription start site region 115193
Tssr115194 12 109948890 to 109948901 11 + TSS region transcription start site region 115194
Tssr117765 12 109949638 to 109949686 48 - TSS region transcription start site region 117765
Scrd2 12 109969663 to 113361762 3392099 heritable phenotypic marker smallest common region of deletion 2
Vtbt14 12 109969663 to 109969809 146 QTL vertebral trabecular bone trait 14
D12Mit79 12 109969663 to 109969809 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 79
Tbqt3 12 109969809 to 35235497 -74734312 QTL tibia bone quality traits 3
Cpgi5108 12 109975705 to 109975898 193 CpG island CpG island 5108
Gm34667 12 109992758 to 110023991 31233 - lincRNA gene predicted gene, 34667
Tssr117766 12 110019881 to 110019898 17 - TSS region transcription start site region 117766
Tssr117767 12 110019956 to 110019964 8 - TSS region transcription start site region 117767
Tssr117768 12 110023811 to 110023838 27 - TSS region transcription start site region 117768
Tssr117769 12 110023845 to 110023877 32 - TSS region transcription start site region 117769
Gm40574 12 110024685 to 110036624 11939 + lncRNA gene predicted gene, 40574
Gm34719 12 110046686 to 110086423 39737 - lincRNA gene predicted gene, 34719
Gm47187 12 110062270 to 110062498 228 + pseudogene predicted gene, 47187
D12Mit262 12 110067414 to 110067535 121 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 262
Gm47188 12 110083820 to 110085180 1360 + unclassified gene predicted gene, 47188
Tssr117770 12 110086377 to 110086393 16 - TSS region transcription start site region 117770
Tssr117771 12 110087936 to 110087980 44 - TSS region transcription start site region 117771
Tssr3953 12 110088807 to 110088808 1 + TSS region transcription start site region 3953
3110009F21Rik 12 110151654 to 110158073 6419 - lincRNA gene RIKEN cDNA 3110009F21 gene
Gm34785 12 110177956 to 110183644 5688 - lincRNA gene predicted gene, 34785
Cpgi5109 12 110187394 to 110189707 2313 CpG island CpG island 5109
Gm40575 12 110203651 to 110210776 7125 + lncRNA gene predicted gene, 40575
Gm34895 12 110208962 to 110215536 6574 - lncRNA gene predicted gene, 34895
Gm40576 12 110225515 to 110236362 10847 - lincRNA gene predicted gene, 40576
4930425K24Rik 12 110236492 to 110238634 2142 + unclassified gene RIKEN cDNA 4930425K24 gene
Dio3os 12 110275384 to 110278068 2684 - bidirectional promoter lncRNA gene deiodinase, iodothyronine type III, opposite strand
Cpgi5110 12 110277278 to 110280914 3636 CpG island CpG island 5110
Mir1247 12 110278048 to 110278129 81 - miRNA gene microRNA 1247
Tssr117772 12 110278932 to 110278956 24 - TSS region transcription start site region 117772
Tssr117773 12 110278958 to 110278991 33 - TSS region transcription start site region 117773
Tssr115195 12 110279228 to 110279231 3 + TSS region transcription start site region 115195
Dio3 12 110279230 to 110281097 1867 + protein coding gene deiodinase, iodothyronine type III
Cpgi5111 12 110281769 to 110281924 155 CpG island CpG island 5111