Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:109577093-109617097

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mir493 12 109580233 to 109580315 82 + miRNA gene microRNA 493
Tssr115127 12 109581012 to 109581016 4 + TSS region transcription start site region 115127
Tssr115128 12 109581513 to 109581532 19 + TSS region transcription start site region 115128
Tssr115129 12 109581713 to 109581735 22 + TSS region transcription start site region 115129
Tssr115130 12 109581869 to 109581917 48 + TSS region transcription start site region 115130
Tssr115131 12 109583661 to 109583678 17 + TSS region transcription start site region 115131
Tssr115132 12 109585047 to 109585063 16 + TSS region transcription start site region 115132
Mirc42 12 109585789 to 109586146 357 complex/cluster/region micro RNA cluster 42, including Mir337 through Mir665
Mir337 12 109585789 to 109585885 96 + miRNA gene microRNA 337
Mir3544 12 109585813 to 109585873 60 - miRNA gene microRNA 3544
Mir540 12 109586080 to 109586146 66 + miRNA gene microRNA 540
Mirc43 12 109586314 to 109611941 25627 complex/cluster/region microRNA cluster 43, including Mir341 through Mir1188
Mir665 12 109586314 to 109586407 93 + miRNA gene microRNA 665
Mir3070a 12 109587943 to 109588031 88 + miRNA gene microRNA 3070a
Mir3070b 12 109588592 to 109588680 88 + miRNA gene microRNA 3070b
Rtl1 12 109590169 to 109595403 5234 - protein coding gene retrotransposon Gaglike 1
Mir431 12 109590447 to 109590537 90 + miRNA gene microRNA 431
Tssr115133 12 109590523 to 109590526 3 + TSS region transcription start site region 115133
Tssr115134 12 109590900 to 109590918 18 + TSS region transcription start site region 115134
6430411K18Rik 12 109591537 to 109592851 1314 + lncRNA gene RIKEN cDNA 6430411K18 gen
Mir433 12 109591715 to 109591838 123 + miRNA gene microRNA 433
Mir127 12 109592846 to 109592915 69 + miRNA gene microRNA 127
Mir434 12 109594506 to 109594599 93 + miRNA gene microRNA 434
Mir432 12 109594956 to 109595030 74 + miRNA gene microRNA 432
Mir3071 12 109595318 to 109595397 79 - miRNA gene microRNA 3071
Mir136 12 109595327 to 109595388 61 + miRNA gene microRNA 136
Tssr115135 12 109595387 to 109595391 4 + TSS region transcription start site region 115135
1110006E14Rik 12 109595804 to 109598538 2734 unclassified non-coding RNA gene RIKEN cDNA 1110006E14 gene
Tssr117754 12 109597093 to 109597097 4 - TSS region transcription start site region 117754
Tssr115136 12 109597486 to 109597496 10 + TSS region transcription start site region 115136
Tssr117755 12 109598536 to 109598541 5 - TSS region transcription start site region 117755
Tssr115137 12 109599280 to 109599284 4 + TSS region transcription start site region 115137
Tssr117756 12 109600328 to 109600348 20 - TSS region transcription start site region 117756
Tssr115138 12 109600819 to 109600824 5 + TSS region transcription start site region 115138
Tssr115139 12 109603013 to 109603024 11 + TSS region transcription start site region 115139
Tssr115140 12 109603038 to 109603067 29 + TSS region transcription start site region 115140
Gm27350 12 109603882 to 109603979 97 + unclassified non-coding RNA gene predicted gene, 27350
Tssr115141 12 109603915 to 109603920 5 + TSS region transcription start site region 115141
Rian 12 109603945 to 109661716 57771 + lncRNA gene RNA imprinted and accumulated in nucleus
Tssr117757 12 109604415 to 109604420 5 - TSS region transcription start site region 117757
Tssr115142 12 109605026 to 109605029 3 + TSS region transcription start site region 115142
Tssr115143 12 109606787 to 109606791 4 + TSS region transcription start site region 115143
Tssr115144 12 109607798 to 109607802 4 + TSS region transcription start site region 115144
Tssr115145 12 109608773 to 109608793 20 + TSS region transcription start site region 115145
Tssr115146 12 109608868 to 109608882 14 + TSS region transcription start site region 115146
Tssr115147 12 109609696 to 109609700 4 + TSS region transcription start site region 115147
Mir341 12 109611500 to 109611595 95 + miRNA gene microRNA 341
Mir1188 12 109611822 to 109611941 119 + miRNA gene microRNA 1188
Tssr117758 12 109615510 to 109615526 16 - TSS region transcription start site region 117758
Tssr117759 12 109615562 to 109615573 11 - TSS region transcription start site region 117759
Tssr117760 12 109615588 to 109615599 11 - TSS region transcription start site region 117760
Tssr115148 12 109615770 to 109615772 2 + TSS region transcription start site region 115148