Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:109547093-109647097

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Meg3 12 109541001 to 109571726 30725 + lincRNA gene maternally expressed 3
Tssr115072 12 109547112 to 109547123 11 + TSS region transcription start site region 115072
Tssr115073 12 109547443 to 109547455 12 + TSS region transcription start site region 115073
Tssr115074 12 109547837 to 109547850 13 + TSS region transcription start site region 115074
Tssr115075 12 109547985 to 109547996 11 + TSS region transcription start site region 115075
Tssr115076 12 109548829 to 109548848 19 + TSS region transcription start site region 115076
Tssr115077 12 109549280 to 109549301 21 + TSS region transcription start site region 115077
Cpgi5107 12 109549712 to 109549985 273 CpG island CpG island 5107
Tssr115078 12 109550908 to 109550913 5 + TSS region transcription start site region 115078
Tssr115079 12 109553903 to 109553904 1 + TSS region transcription start site region 115079
Tssr115080 12 109558739 to 109558745 6 + TSS region transcription start site region 115080
Tssr115081 12 109559098 to 109559112 14 + TSS region transcription start site region 115081
Tssr115082 12 109559264 to 109559291 27 + TSS region transcription start site region 115082
Tssr115083 12 109559299 to 109559315 16 + TSS region transcription start site region 115083
Tssr115084 12 109559371 to 109559382 11 + TSS region transcription start site region 115084
Tssr115085 12 109559484 to 109559499 15 + TSS region transcription start site region 115085
Tssr115086 12 109559503 to 109559518 15 + TSS region transcription start site region 115086
Tssr115087 12 109559533 to 109559548 15 + TSS region transcription start site region 115087
Tssr115088 12 109559605 to 109559629 24 + TSS region transcription start site region 115088
Tssr115089 12 109559749 to 109559763 14 + TSS region transcription start site region 115089
Tssr115090 12 109559788 to 109559801 13 + TSS region transcription start site region 115090
Tssr115091 12 109559866 to 109559890 24 + TSS region transcription start site region 115091
Tssr115092 12 109559921 to 109559937 16 + TSS region transcription start site region 115092
Tssr115093 12 109559954 to 109559957 3 + TSS region transcription start site region 115093
Tssr117749 12 109560088 to 109560114 26 - TSS region transcription start site region 117749
Tssr115094 12 109560290 to 109560301 11 + TSS region transcription start site region 115094
Tssr115095 12 109560445 to 109560464 19 + TSS region transcription start site region 115095
Tssr117750 12 109560530 to 109560549 19 - TSS region transcription start site region 117750
Tssr117751 12 109560553 to 109560585 32 - TSS region transcription start site region 117751
Tssr115096 12 109560587 to 109560607 20 + TSS region transcription start site region 115096
Tssr115097 12 109560633 to 109560653 20 + TSS region transcription start site region 115097
Tssr115098 12 109560658 to 109560682 24 + TSS region transcription start site region 115098
Tssr115099 12 109560683 to 109560708 25 + TSS region transcription start site region 115099
Tssr115100 12 109560728 to 109560746 18 + TSS region transcription start site region 115100
Tssr115101 12 109560751 to 109560764 13 + TSS region transcription start site region 115101
Tssr115102 12 109560768 to 109560791 23 + TSS region transcription start site region 115102
Tssr115103 12 109560823 to 109560840 17 + TSS region transcription start site region 115103
Tssr115104 12 109560849 to 109560858 9 + TSS region transcription start site region 115104
Tssr117752 12 109560861 to 109560872 11 - TSS region transcription start site region 117752
Tssr115105 12 109560944 to 109560955 11 + TSS region transcription start site region 115105
Tssr115106 12 109560959 to 109560988 29 + TSS region transcription start site region 115106
Tssr115107 12 109560992 to 109561003 11 + TSS region transcription start site region 115107
Tssr115108 12 109561022 to 109561054 32 + TSS region transcription start site region 115108
Tssr115109 12 109561201 to 109561212 11 + TSS region transcription start site region 115109
Tssr115110 12 109561221 to 109561235 14 + TSS region transcription start site region 115110
Tssr115111 12 109561258 to 109561274 16 + TSS region transcription start site region 115111
Tssr115112 12 109561598 to 109561610 12 + TSS region transcription start site region 115112
Tssr115113 12 109561611 to 109561625 14 + TSS region transcription start site region 115113
Tssr115114 12 109561635 to 109561650 15 + TSS region transcription start site region 115114
Tssr117753 12 109561750 to 109561765 15 - TSS region transcription start site region 117753
Tssr115115 12 109561910 to 109561923 13 + TSS region transcription start site region 115115
Tssr115116 12 109561963 to 109561978 15 + TSS region transcription start site region 115116
Tssr115117 12 109561995 to 109562013 18 + TSS region transcription start site region 115117
Tssr115118 12 109562304 to 109562318 14 + TSS region transcription start site region 115118
Mir770 12 109563692 to 109563785 93 + miRNA gene microRNA 770
Tssr115119 12 109563764 to 109563768 4 + TSS region transcription start site region 115119
Tssr115120 12 109564664 to 109564676 12 + TSS region transcription start site region 115120
Tssr115121 12 109564699 to 109564715 16 + TSS region transcription start site region 115121
Tssr115122 12 109564894 to 109564911 17 + TSS region transcription start site region 115122
Tssr115123 12 109565927 to 109565939 12 + TSS region transcription start site region 115123
Tssr115124 12 109566318 to 109566332 14 + TSS region transcription start site region 115124
Tssr3950 12 109568181 to 109568196 15 + TSS region transcription start site region 3950
Gm26906 12 109568628 to 109571723 3095 - lincRNA gene predicted gene, 26906
Tssr115125 12 109571639 to 109571672 33 + TSS region transcription start site region 115125
Tssr115126 12 109571675 to 109571702 27 + TSS region transcription start site region 115126
Mir673 12 109571990 to 109572080 90 + miRNA gene microRNA 673
Mir493 12 109580233 to 109580315 82 + miRNA gene microRNA 493
Tssr115127 12 109581012 to 109581016 4 + TSS region transcription start site region 115127
Tssr115128 12 109581513 to 109581532 19 + TSS region transcription start site region 115128
Tssr115129 12 109581713 to 109581735 22 + TSS region transcription start site region 115129
Tssr115130 12 109581869 to 109581917 48 + TSS region transcription start site region 115130
Tssr115131 12 109583661 to 109583678 17 + TSS region transcription start site region 115131
Tssr115132 12 109585047 to 109585063 16 + TSS region transcription start site region 115132
Mirc42 12 109585789 to 109586146 357 complex/cluster/region micro RNA cluster 42, including Mir337 through Mir665
Mir337 12 109585789 to 109585885 96 + miRNA gene microRNA 337
Mir3544 12 109585813 to 109585873 60 - miRNA gene microRNA 3544
Mir540 12 109586080 to 109586146 66 + miRNA gene microRNA 540
Mir665 12 109586314 to 109586407 93 + miRNA gene microRNA 665
Mirc43 12 109586314 to 109611941 25627 complex/cluster/region microRNA cluster 43, including Mir341 through Mir1188
Mir3070a 12 109587943 to 109588031 88 + miRNA gene microRNA 3070a
Mir3070b 12 109588592 to 109588680 88 + miRNA gene microRNA 3070b
Rtl1 12 109590169 to 109595403 5234 - protein coding gene retrotransposon Gaglike 1
Mir431 12 109590447 to 109590537 90 + miRNA gene microRNA 431
Tssr115133 12 109590523 to 109590526 3 + TSS region transcription start site region 115133
Tssr115134 12 109590900 to 109590918 18 + TSS region transcription start site region 115134
6430411K18Rik 12 109591537 to 109592851 1314 + lncRNA gene RIKEN cDNA 6430411K18 gen
Mir433 12 109591715 to 109591838 123 + miRNA gene microRNA 433
Mir127 12 109592846 to 109592915 69 + miRNA gene microRNA 127
Mir434 12 109594506 to 109594599 93 + miRNA gene microRNA 434
Mir432 12 109594956 to 109595030 74 + miRNA gene microRNA 432
Mir3071 12 109595318 to 109595397 79 - miRNA gene microRNA 3071
Mir136 12 109595327 to 109595388 61 + miRNA gene microRNA 136
Tssr115135 12 109595387 to 109595391 4 + TSS region transcription start site region 115135
1110006E14Rik 12 109595804 to 109598538 2734 unclassified non-coding RNA gene RIKEN cDNA 1110006E14 gene
Tssr117754 12 109597093 to 109597097 4 - TSS region transcription start site region 117754
Tssr115136 12 109597486 to 109597496 10 + TSS region transcription start site region 115136
Tssr117755 12 109598536 to 109598541 5 - TSS region transcription start site region 117755
Tssr115137 12 109599280 to 109599284 4 + TSS region transcription start site region 115137
Tssr117756 12 109600328 to 109600348 20 - TSS region transcription start site region 117756
Tssr115138 12 109600819 to 109600824 5 + TSS region transcription start site region 115138
Tssr115139 12 109603013 to 109603024 11 + TSS region transcription start site region 115139
Tssr115140 12 109603038 to 109603067 29 + TSS region transcription start site region 115140
Gm27350 12 109603882 to 109603979 97 + unclassified non-coding RNA gene predicted gene, 27350
Tssr115141 12 109603915 to 109603920 5 + TSS region transcription start site region 115141
Rian 12 109603945 to 109661716 57771 + lncRNA gene RNA imprinted and accumulated in nucleus
Tssr117757 12 109604415 to 109604420 5 - TSS region transcription start site region 117757
Tssr115142 12 109605026 to 109605029 3 + TSS region transcription start site region 115142
Tssr115143 12 109606787 to 109606791 4 + TSS region transcription start site region 115143
Tssr115144 12 109607798 to 109607802 4 + TSS region transcription start site region 115144
Tssr115145 12 109608773 to 109608793 20 + TSS region transcription start site region 115145
Tssr115146 12 109608868 to 109608882 14 + TSS region transcription start site region 115146
Tssr115147 12 109609696 to 109609700 4 + TSS region transcription start site region 115147
Mir341 12 109611500 to 109611595 95 + miRNA gene microRNA 341
Mir1188 12 109611822 to 109611941 119 + miRNA gene microRNA 1188
Tssr117758 12 109615510 to 109615526 16 - TSS region transcription start site region 117758
Tssr117759 12 109615562 to 109615573 11 - TSS region transcription start site region 117759
Tssr117760 12 109615588 to 109615599 11 - TSS region transcription start site region 117760
Tssr115148 12 109615770 to 109615772 2 + TSS region transcription start site region 115148
Tssr115149 12 109617935 to 109617939 4 + TSS region transcription start site region 115149
Gm23912 12 109618114 to 109618200 86 + miRNA gene predicted gene, 23912
Mir370 12 109618258 to 109618336 78 + miRNA gene microRNA 370
Tssr115150 12 109629072 to 109629083 11 + TSS region transcription start site region 115150
Tssr115151 12 109630093 to 109630106 13 + TSS region transcription start site region 115151
Gm24564 12 109631074 to 109631148 74 + snoRNA gene predicted gene, 24564
Tssr115152 12 109631925 to 109631928 3 + TSS region transcription start site region 115152
Tssr115153 12 109633208 to 109633212 4 + TSS region transcription start site region 115153
Gm23474 12 109633768 to 109633842 74 + snoRNA gene predicted gene, 23474
Tssr115154 12 109636008 to 109636020 12 + TSS region transcription start site region 115154
AF357425 12 109636012 to 109636080 68 + snoRNA gene snoRNA AF357425
Tssr3951 12 109636074 to 109636085 11 + TSS region transcription start site region 3951
Tssr115155 12 109636134 to 109636158 24 + TSS region transcription start site region 115155
Tssr115156 12 109636224 to 109636241 17 + TSS region transcription start site region 115156
Tssr115157 12 109636315 to 109636378 63 + TSS region transcription start site region 115157
Tssr115158 12 109636395 to 109636432 37 + TSS region transcription start site region 115158
Tssr115159 12 109636497 to 109636529 32 + TSS region transcription start site region 115159
Gm26945 12 109640341 to 109642351 2010 + lincRNA gene predicted gene, 26945
Gm24899 12 109641022 to 109641094 72 + snoRNA gene predicted gene, 24899
AF357426 12 109642838 to 109642904 66 + snoRNA gene snoRNA AF357426
Tssr115160 12 109643351 to 109643357 6 + TSS region transcription start site region 115160
Gm23600 12 109643748 to 109643818 70 + snoRNA gene predicted gene, 23600
Tssr115161 12 109645921 to 109645935 14 + TSS region transcription start site region 115161
Tssr115162 12 109646115 to 109646134 19 + TSS region transcription start site region 115162
Gm24895 12 109646129 to 109646202 73 + snoRNA gene predicted gene, 24895
Tssr115163 12 109646436 to 109646458 22 + TSS region transcription start site region 115163
Tssr115164 12 109646460 to 109646474 14 + TSS region transcription start site region 115164
Tssr115165 12 109646549 to 109646553 4 + TSS region transcription start site region 115165