Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:109249735-109549924

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm22234 12 109319452 to 109319516 64 - miRNA gene predicted gene, 22234
Gm25297 12 109320970 to 109321036 66 - miRNA gene predicted gene, 25297
Tssr115034 12 109375395 to 109375396 1 + TSS region transcription start site region 115034
Cpgi5100 12 109393829 to 109394081 252 CpG island CpG island 5100
Cpgi5101 12 109399735 to 109399924 189 CpG island CpG island 5101
Cpgi5102 12 109437836 to 109437992 156 CpG island CpG island 5102
Cpgi5103 12 109449913 to 109450259 346 CpG island CpG island 5103
Tssr115035 12 109452750 to 109452760 10 + TSS region transcription start site region 115035
Tssr115036 12 109452763 to 109452770 7 + TSS region transcription start site region 115036
Cpgi5104 12 109452763 to 109453973 1210 CpG island CpG island 5104
Tssr115037 12 109452779 to 109452791 12 + TSS region transcription start site region 115037
Tssr115038 12 109452799 to 109452820 21 + TSS region transcription start site region 115038
Dlk1 12 109452823 to 109463336 10513 + protein coding gene delta like non-canonical Notch ligand 1
Tssr115039 12 109452833 to 109452849 16 + TSS region transcription start site region 115039
Tssr115040 12 109453194 to 109453212 18 + TSS region transcription start site region 115040
Tssr115041 12 109453215 to 109453271 56 + TSS region transcription start site region 115041
Tssr115042 12 109453277 to 109453314 37 + TSS region transcription start site region 115042
Tssr115043 12 109453483 to 109453497 14 + TSS region transcription start site region 115043
Tssr3943 12 109453528 to 109453541 13 + TSS region transcription start site region 3943
Tssr3944 12 109453556 to 109453563 7 + TSS region transcription start site region 3944
Tssr3945 12 109453603 to 109453616 13 + TSS region transcription start site region 3945
Tssr3946 12 109453626 to 109453631 5 + TSS region transcription start site region 3946
Tssr3947 12 109453636 to 109453643 7 + TSS region transcription start site region 3947
Tssr3948 12 109453649 to 109453657 8 + TSS region transcription start site region 3948
Tssr115044 12 109454985 to 109454991 6 + TSS region transcription start site region 115044
Tssr115045 12 109457009 to 109457012 3 + TSS region transcription start site region 115045
Tssr115046 12 109458068 to 109458104 36 + TSS region transcription start site region 115046
Tssr117744 12 109458116 to 109458141 25 - TSS region transcription start site region 117744
Cpgi5105 12 109459518 to 109460132 614 CpG island CpG island 5105
Tssr115047 12 109459638 to 109459684 46 + TSS region transcription start site region 115047
Tssr115048 12 109459686 to 109459739 53 + TSS region transcription start site region 115048
Tssr115049 12 109459770 to 109459784 14 + TSS region transcription start site region 115049
Tssr115050 12 109459863 to 109459876 13 + TSS region transcription start site region 115050
Tssr115051 12 109459950 to 109459962 12 + TSS region transcription start site region 115051
Tssr115052 12 109459967 to 109459980 13 + TSS region transcription start site region 115052
Tssr115053 12 109459985 to 109460030 45 + TSS region transcription start site region 115053
Tssr3949 12 109460082 to 109460105 23 + TSS region transcription start site region 3949
Tssr117745 12 109460354 to 109460386 32 - TSS region transcription start site region 117745
Tssr115054 12 109460528 to 109460584 56 + TSS region transcription start site region 115054
Tssr115055 12 109462569 to 109462571 2 + TSS region transcription start site region 115055
Gm34081 12 109493529 to 109516740 23211 - lincRNA gene predicted gene, 34081
Gm34017 12 109508183 to 109512772 4589 + lncRNA gene predicted gene, 34017
Cpgi5106 12 109528251 to 109528577 326 CpG island CpG island 5106
Gm27528 12 109532442 to 109532646 204 + unclassified non-coding RNA gene predicted gene, 27528
Tssr117746 12 109539765 to 109539769 4 - TSS region transcription start site region 117746
Tssr115056 12 109540979 to 109541006 27 + TSS region transcription start site region 115056
Meg3 12 109541001 to 109571726 30725 + lincRNA gene maternally expressed 3
Gm27596 12 109541168 to 109541250 82 + unclassified non-coding RNA gene predicted gene, 27596
Gm27300 12 109544339 to 109544435 96 + unclassified non-coding RNA gene predicted gene, 27300
Mir1906-1 12 109544541 to 109544620 79 + miRNA gene microRNA 1906-1
Tssr115057 12 109544641 to 109544703 62 + TSS region transcription start site region 115057
Tssr115058 12 109544807 to 109544838 31 + TSS region transcription start site region 115058
Tssr115059 12 109544932 to 109544940 8 + TSS region transcription start site region 115059
Tssr115060 12 109545196 to 109545219 23 + TSS region transcription start site region 115060
Tssr115061 12 109545390 to 109545443 53 + TSS region transcription start site region 115061
Tssr115062 12 109545511 to 109545526 15 + TSS region transcription start site region 115062
Tssr115063 12 109545539 to 109545548 9 + TSS region transcription start site region 115063
Tssr115064 12 109545574 to 109545606 32 + TSS region transcription start site region 115064
Tssr115065 12 109545736 to 109545759 23 + TSS region transcription start site region 115065
Tssr115066 12 109545782 to 109545795 13 + TSS region transcription start site region 115066
Tssr117747 12 109545809 to 109545818 9 - TSS region transcription start site region 117747
Tssr117748 12 109545898 to 109545906 8 - TSS region transcription start site region 117748
Tssr115067 12 109545942 to 109545956 14 + TSS region transcription start site region 115067
Tssr115068 12 109546072 to 109546091 19 + TSS region transcription start site region 115068
Tssr115069 12 109546333 to 109546398 65 + TSS region transcription start site region 115069
Tssr115070 12 109546409 to 109546493 84 + TSS region transcription start site region 115070
Tssr115071 12 109547058 to 109547086 28 + TSS region transcription start site region 115071
Tssr115072 12 109547112 to 109547123 11 + TSS region transcription start site region 115072
Tssr115073 12 109547443 to 109547455 12 + TSS region transcription start site region 115073
Tssr115074 12 109547837 to 109547850 13 + TSS region transcription start site region 115074
Tssr115075 12 109547985 to 109547996 11 + TSS region transcription start site region 115075
Tssr115076 12 109548829 to 109548848 19 + TSS region transcription start site region 115076
Tssr115077 12 109549280 to 109549301 21 + TSS region transcription start site region 115077
Cpgi5107 12 109549712 to 109549985 273 CpG island CpG island 5107