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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:10899887-11699944

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pgk1-rs7 12 10898986 to 10900240 1254 - pseudogene phosphoglycerate kinase-1, related sequence-7
Tssr115727 12 10900313 to 10900318 5 - TSS region transcription start site region 115727
Gm48082 12 10990354 to 10994195 3841 + pseudogene predicted gene, 48082
7420701I03Rik 12 11047813 to 11078741 30928 + lincRNA gene RIKEN cDNA 7420701I03 gene
Kcns3 12 11090202 to 11151056 60854 - protein coding gene potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3
Gm48088 12 11099596 to 11100077 481 + pseudogene predicted gene, 48088
Tssr112785 12 11139498 to 11139499 1 + TSS region transcription start site region 112785
Cpgi4414 12 11149216 to 11150980 1764 CpG island CpG island 4414
Tssr115728 12 11150305 to 11150348 43 - TSS region transcription start site region 115728
9530020I12Rik 12 11185993 to 11204502 18509 - lincRNA gene RIKEN cDNA 9530020I12 gene
Cpgi4415 12 11196188 to 11196490 302 CpG island CpG island 4415
Tssr115729 12 11204286 to 11204303 17 - TSS region transcription start site region 115729
Tssr115730 12 11204305 to 11204325 20 - TSS region transcription start site region 115730
Tssr115731 12 11204375 to 11204387 12 - TSS region transcription start site region 115731
D12Mit240 12 11207819 to 11207931 112 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 240
Msgn1 12 11208382 to 11208948 566 - protein coding gene mesogenin 1
Cpgi4416 12 11208445 to 11208786 341 CpG island CpG island 4416
1700034J04Rik 12 11221461 to 11222210 749 - unclassified gene RIKEN cDNA 1700034J04 gene
Gen1 12 11239718 to 11266029 26311 - protein coding gene GEN1, Holliday junction 5' flap endonuclease
Cpgi4417 12 11265401 to 11266864 1463 CpG island CpG island 4417
Tssr115732 12 11265768 to 11265816 48 - TSS region transcription start site region 115732
Tssr112786 12 11265867 to 11265883 16 + TSS region transcription start site region 112786
Smc6 12 11265886 to 11319785 53899 + protein coding gene structural maintenance of chromosomes 6
Tssr112787 12 11266101 to 11266178 77 + TSS region transcription start site region 112787
Tssr112788 12 11266179 to 11266188 9 + TSS region transcription start site region 112788
Tssr112789 12 11266484 to 11266523 39 + TSS region transcription start site region 112789
Tssr112790 12 11266565 to 11266572 7 + TSS region transcription start site region 112790
Tssr112791 12 11276299 to 11276317 18 + TSS region transcription start site region 112791
Tssr112792 12 11279634 to 11279648 14 + TSS region transcription start site region 112792
Tssr112793 12 11279651 to 11279664 13 + TSS region transcription start site region 112793
Tssr112794 12 11279701 to 11279715 14 + TSS region transcription start site region 112794
Tssr112795 12 11280332 to 11280377 45 + TSS region transcription start site region 112795
Tssr112796 12 11282356 to 11282376 20 + TSS region transcription start site region 112796
Tssr112797 12 11289609 to 11289646 37 + TSS region transcription start site region 112797
Tssr112798 12 11295010 to 11295031 21 + TSS region transcription start site region 112798
Tssr112799 12 11297176 to 11297191 15 + TSS region transcription start site region 112799
Mir7675 12 11299887 to 11299944 57 + miRNA gene microRNA 7675
Tssr112800 12 11311567 to 11311571 4 + TSS region transcription start site region 112800
Vsnl1 12 11325242 to 11436613 111371 - protein coding gene visinin-like 1
Tssr115733 12 11325906 to 11325919 13 - TSS region transcription start site region 115733
Tssr112801 12 11326145 to 11326179 34 + TSS region transcription start site region 112801
Tssr115734 12 11326191 to 11326215 24 - TSS region transcription start site region 115734
Tssr115735 12 11326261 to 11326314 53 - TSS region transcription start site region 115735
Tssr115736 12 11326315 to 11326351 36 - TSS region transcription start site region 115736
Tssr115737 12 11326352 to 11326363 11 - TSS region transcription start site region 115737
Tssr115738 12 11326422 to 11326436 14 - TSS region transcription start site region 115738
Tssr115739 12 11326442 to 11326461 19 - TSS region transcription start site region 115739
Tssr115740 12 11326474 to 11326490 16 - TSS region transcription start site region 115740
Tssr115741 12 11326497 to 11326509 12 - TSS region transcription start site region 115741
Tssr115742 12 11332032 to 11332055 23 - TSS region transcription start site region 115742
Tssr115743 12 11332057 to 11332071 14 - TSS region transcription start site region 115743
Tssr115744 12 11386872 to 11386888 16 - TSS region transcription start site region 115744
Tssr115745 12 11435638 to 11435653 15 - TSS region transcription start site region 115745
Tssr3791 12 11436475 to 11436487 12 - TSS region transcription start site region 3791
Cpgi4418 12 11436489 to 11436772 283 CpG island CpG island 4418
Tssr115746 12 11436498 to 11436509 11 - TSS region transcription start site region 115746
Tssr3792 12 11436518 to 11436540 22 - TSS region transcription start site region 3792
Tssr115747 12 11436550 to 11436603 53 - TSS region transcription start site region 115747
Tssr115748 12 11436607 to 11436618 11 - TSS region transcription start site region 115748
Tssr3793 12 11436711 to 11436720 9 - TSS region transcription start site region 3793
Cpgi4419 12 11438020 to 11438277 257 CpG island CpG island 4419
Tssr112802 12 11438191 to 11438238 47 + TSS region transcription start site region 112802
4930511A02Rik 12 11438233 to 11444812 6579 + lincRNA gene RIKEN cDNA 4930511A02 gene
Cpgi4420 12 11455744 to 11456419 675 CpG island CpG island 4420
Tssr112803 12 11456052 to 11456058 6 + TSS region transcription start site region 112803
Rad51ap2 12 11456079 to 11462928 6849 + protein coding gene RAD51 associated protein 2
D12Mit168 12 11465395 to 11465581 186 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 168
Gm47807 12 11499295 to 11499892 597 + pseudogene predicted gene, 47807
Gm47808 12 11507226 to 11512390 5164 - unclassified non-coding RNA gene predicted gene, 47808
Tcq14 12 11610000 to 97210000 85600000 QTL total cholesterol QTL 14
Gm4803 12 11665771 to 11667049 1278 - pseudogene predicted gene 4803
Gm23781 12 11688697 to 11689004 307 - unclassified non-coding RNA gene predicted gene, 23781
Gm47821 12 11698868 to 11700546 1678 - unclassified gene predicted gene, 47821