Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:108838899-114068911

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1402 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc25a47 12 108849813 to 108856815 7002 + protein coding gene solute carrier family 25, member 47
Tssr115027 12 108851122 to 108851129 7 + TSS region transcription start site region 115027
Tssr115028 12 108853477 to 108853508 31 + TSS region transcription start site region 115028
Tssr115029 12 108855332 to 108855362 30 + TSS region transcription start site region 115029
Wars 12 108860030 to 108894174 34144 - protein coding gene tryptophanyl-tRNA synthetase
Gm22079 12 108862564 to 108862669 105 - snRNA gene predicted gene, 22079
Tssr115030 12 108865449 to 108865460 11 + TSS region transcription start site region 115030
Tssr117709 12 108871610 to 108871617 7 - TSS region transcription start site region 117709
Tssr117710 12 108873273 to 108873284 11 - TSS region transcription start site region 117710
Tssr117711 12 108875520 to 108875529 9 - TSS region transcription start site region 117711
Tssr3942 12 108875534 to 108875539 5 - TSS region transcription start site region 3942
Tssr117712 12 108875541 to 108875550 9 - TSS region transcription start site region 117712
Tssr117713 12 108875570 to 108875580 10 - TSS region transcription start site region 117713
Tssr117714 12 108875587 to 108875616 29 - TSS region transcription start site region 117714
Tssr117715 12 108875625 to 108875630 5 - TSS region transcription start site region 117715
Tssr117716 12 108875643 to 108875654 11 - TSS region transcription start site region 117716
5033424D13Rik 12 108878769 to 108879416 647 + unclassified gene RIKEN cDNA 5033424D13 gene
Tssr117717 12 108882741 to 108882768 27 - TSS region transcription start site region 117717
Tssr117718 12 108882772 to 108882779 7 - TSS region transcription start site region 117718
Tssr117719 12 108882784 to 108882800 16 - TSS region transcription start site region 117719
Tssr117720 12 108884336 to 108884346 10 - TSS region transcription start site region 117720
Tssr117721 12 108884398 to 108884411 13 - TSS region transcription start site region 117721
Tssr117722 12 108885799 to 108885808 9 - TSS region transcription start site region 117722
Tssr117723 12 108885883 to 108885891 8 - TSS region transcription start site region 117723
Tssr117724 12 108888531 to 108888544 13 - TSS region transcription start site region 117724
Tssr117725 12 108888750 to 108888774 24 - TSS region transcription start site region 117725
Tssr117726 12 108888776 to 108888783 7 - TSS region transcription start site region 117726
Tssr117727 12 108889306 to 108889309 3 - TSS region transcription start site region 117727
Tssr117728 12 108893198 to 108893215 17 - TSS region transcription start site region 117728
1810056I18Rik 12 108893297 to 108893508 211 unclassified gene RIKEN cDNA 1810056I18 gene
Tssr117729 12 108893361 to 108893369 8 - TSS region transcription start site region 117729
Tssr117730 12 108893383 to 108893397 14 - TSS region transcription start site region 117730
Tssr117731 12 108893400 to 108893411 11 - TSS region transcription start site region 117731
Tssr117732 12 108893413 to 108893493 80 - TSS region transcription start site region 117732
Tssr117733 12 108893499 to 108893518 19 - TSS region transcription start site region 117733
Tssr117734 12 108893521 to 108893546 25 - TSS region transcription start site region 117734
Cpgi5093 12 108893576 to 108894539 963 CpG island CpG island 5093
Tssr115031 12 108893631 to 108893655 24 + TSS region transcription start site region 115031
Tssr115032 12 108893938 to 108893944 6 + TSS region transcription start site region 115032
Tssr117735 12 108894116 to 108894170 54 - TSS region transcription start site region 117735
Wdr25 12 108894228 to 109028452 134224 + protein coding gene WD repeat domain 25
Tssr115033 12 108894279 to 108894312 33 + TSS region transcription start site region 115033
Cpgi5094 12 108959398 to 108959809 411 CpG island CpG island 5094
Gm47980 12 108960912 to 108963832 2920 + unclassified gene predicted gene, 47980
Gm18405 12 108991141 to 108991651 510 - pseudogene predicted gene, 18405
Cpgi5095 12 108994628 to 108994945 317 CpG island CpG island 5095
Begain 12 109032187 to 109068217 36030 - protein coding gene brain-enriched guanylate kinase-associated
Cpgi5096 12 109032963 to 109034803 1840 CpG island CpG island 5096
Tssr117736 12 109033324 to 109033328 4 - TSS region transcription start site region 117736
Cpgi5097 12 109051858 to 109054413 2555 CpG island CpG island 5097
Tssr117737 12 109053087 to 109053104 17 - TSS region transcription start site region 117737
Tssr117738 12 109053310 to 109053321 11 - TSS region transcription start site region 117738
Tssr117739 12 109053723 to 109053761 38 - TSS region transcription start site region 117739
Cpgi5098 12 109067436 to 109068796 1360 CpG island CpG island 5098
Tssr117740 12 109068173 to 109068247 74 - TSS region transcription start site region 117740
Tssr117741 12 109068356 to 109068368 12 - TSS region transcription start site region 117741
Cpgi5099 12 109073361 to 109073523 162 CpG island CpG island 5099
Tssr117742 12 109073392 to 109073410 18 - TSS region transcription start site region 117742
Tssr117743 12 109073412 to 109073445 33 - TSS region transcription start site region 117743
Mif-ps7 12 109098227 to 109098553 326 + pseudogene macrophage migration inhibitory factor, pseudogene 7
Plyid 12 109217459 to 115921502 6704043 QTL Polymeric IgA dominance
D12Mit80 12 109217459 to 109217650 191 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 80
Gm22234 12 109319452 to 109319516 64 - miRNA gene predicted gene, 22234
Gm25297 12 109320970 to 109321036 66 - miRNA gene predicted gene, 25297
Tssr115034 12 109375395 to 109375396 1 + TSS region transcription start site region 115034
Cpgi5100 12 109393829 to 109394081 252 CpG island CpG island 5100
Cpgi5101 12 109399735 to 109399924 189 CpG island CpG island 5101
Cpgi5102 12 109437836 to 109437992 156 CpG island CpG island 5102
Cpgi5103 12 109449913 to 109450259 346 CpG island CpG island 5103
Tssr115035 12 109452750 to 109452760 10 + TSS region transcription start site region 115035
Cpgi5104 12 109452763 to 109453973 1210 CpG island CpG island 5104
Tssr115036 12 109452763 to 109452770 7 + TSS region transcription start site region 115036
Tssr115037 12 109452779 to 109452791 12 + TSS region transcription start site region 115037
Tssr115038 12 109452799 to 109452820 21 + TSS region transcription start site region 115038
Dlk1 12 109452823 to 109463336 10513 + protein coding gene delta like non-canonical Notch ligand 1
Tssr115039 12 109452833 to 109452849 16 + TSS region transcription start site region 115039
Tssr115040 12 109453194 to 109453212 18 + TSS region transcription start site region 115040
Tssr115041 12 109453215 to 109453271 56 + TSS region transcription start site region 115041
Tssr115042 12 109453277 to 109453314 37 + TSS region transcription start site region 115042
Tssr115043 12 109453483 to 109453497 14 + TSS region transcription start site region 115043
Tssr3943 12 109453528 to 109453541 13 + TSS region transcription start site region 3943
Tssr3944 12 109453556 to 109453563 7 + TSS region transcription start site region 3944
Tssr3945 12 109453603 to 109453616 13 + TSS region transcription start site region 3945
Tssr3946 12 109453626 to 109453631 5 + TSS region transcription start site region 3946
Tssr3947 12 109453636 to 109453643 7 + TSS region transcription start site region 3947
Tssr3948 12 109453649 to 109453657 8 + TSS region transcription start site region 3948
Tssr115044 12 109454985 to 109454991 6 + TSS region transcription start site region 115044
Tssr115045 12 109457009 to 109457012 3 + TSS region transcription start site region 115045
Tssr115046 12 109458068 to 109458104 36 + TSS region transcription start site region 115046
Tssr117744 12 109458116 to 109458141 25 - TSS region transcription start site region 117744
Cpgi5105 12 109459518 to 109460132 614 CpG island CpG island 5105
Tssr115047 12 109459638 to 109459684 46 + TSS region transcription start site region 115047
Tssr115048 12 109459686 to 109459739 53 + TSS region transcription start site region 115048
Tssr115049 12 109459770 to 109459784 14 + TSS region transcription start site region 115049
Tssr115050 12 109459863 to 109459876 13 + TSS region transcription start site region 115050
Tssr115051 12 109459950 to 109459962 12 + TSS region transcription start site region 115051
Tssr115052 12 109459967 to 109459980 13 + TSS region transcription start site region 115052
Tssr115053 12 109459985 to 109460030 45 + TSS region transcription start site region 115053
Tssr3949 12 109460082 to 109460105 23 + TSS region transcription start site region 3949
Tssr117745 12 109460354 to 109460386 32 - TSS region transcription start site region 117745
Tssr115054 12 109460528 to 109460584 56 + TSS region transcription start site region 115054
Tssr115055 12 109462569 to 109462571 2 + TSS region transcription start site region 115055
Gm34081 12 109493529 to 109516740 23211 - lincRNA gene predicted gene, 34081
Gm34017 12 109508183 to 109512772 4589 + lncRNA gene predicted gene, 34017
Cpgi5106 12 109528251 to 109528577 326 CpG island CpG island 5106
Gm27528 12 109532442 to 109532646 204 + unclassified non-coding RNA gene predicted gene, 27528
Tssr117746 12 109539765 to 109539769 4 - TSS region transcription start site region 117746
Tssr115056 12 109540979 to 109541006 27 + TSS region transcription start site region 115056
Meg3 12 109541001 to 109571726 30725 + lincRNA gene maternally expressed 3
Gm27596 12 109541168 to 109541250 82 + unclassified non-coding RNA gene predicted gene, 27596
Gm27300 12 109544339 to 109544435 96 + unclassified non-coding RNA gene predicted gene, 27300
Mir1906-1 12 109544541 to 109544620 79 + miRNA gene microRNA 1906-1
Tssr115057 12 109544641 to 109544703 62 + TSS region transcription start site region 115057
Tssr115058 12 109544807 to 109544838 31 + TSS region transcription start site region 115058
Tssr115059 12 109544932 to 109544940 8 + TSS region transcription start site region 115059
Tssr115060 12 109545196 to 109545219 23 + TSS region transcription start site region 115060
Tssr115061 12 109545390 to 109545443 53 + TSS region transcription start site region 115061
Tssr115062 12 109545511 to 109545526 15 + TSS region transcription start site region 115062
Tssr115063 12 109545539 to 109545548 9 + TSS region transcription start site region 115063
Tssr115064 12 109545574 to 109545606 32 + TSS region transcription start site region 115064
Tssr115065 12 109545736 to 109545759 23 + TSS region transcription start site region 115065
Tssr115066 12 109545782 to 109545795 13 + TSS region transcription start site region 115066
Tssr117747 12 109545809 to 109545818 9 - TSS region transcription start site region 117747
Tssr117748 12 109545898 to 109545906 8 - TSS region transcription start site region 117748
Tssr115067 12 109545942 to 109545956 14 + TSS region transcription start site region 115067
Tssr115068 12 109546072 to 109546091 19 + TSS region transcription start site region 115068
Tssr115069 12 109546333 to 109546398 65 + TSS region transcription start site region 115069
Tssr115070 12 109546409 to 109546493 84 + TSS region transcription start site region 115070
Tssr115071 12 109547058 to 109547086 28 + TSS region transcription start site region 115071
Tssr115072 12 109547112 to 109547123 11 + TSS region transcription start site region 115072
Tssr115073 12 109547443 to 109547455 12 + TSS region transcription start site region 115073
Tssr115074 12 109547837 to 109547850 13 + TSS region transcription start site region 115074
Tssr115075 12 109547985 to 109547996 11 + TSS region transcription start site region 115075
Tssr115076 12 109548829 to 109548848 19 + TSS region transcription start site region 115076
Tssr115077 12 109549280 to 109549301 21 + TSS region transcription start site region 115077
Cpgi5107 12 109549712 to 109549985 273 CpG island CpG island 5107
Tssr115078 12 109550908 to 109550913 5 + TSS region transcription start site region 115078
Tssr115079 12 109553903 to 109553904 1 + TSS region transcription start site region 115079
Tssr115080 12 109558739 to 109558745 6 + TSS region transcription start site region 115080
Tssr115081 12 109559098 to 109559112 14 + TSS region transcription start site region 115081
Tssr115082 12 109559264 to 109559291 27 + TSS region transcription start site region 115082
Tssr115083 12 109559299 to 109559315 16 + TSS region transcription start site region 115083
Tssr115084 12 109559371 to 109559382 11 + TSS region transcription start site region 115084
Tssr115085 12 109559484 to 109559499 15 + TSS region transcription start site region 115085
Tssr115086 12 109559503 to 109559518 15 + TSS region transcription start site region 115086
Tssr115087 12 109559533 to 109559548 15 + TSS region transcription start site region 115087
Tssr115088 12 109559605 to 109559629 24 + TSS region transcription start site region 115088
Tssr115089 12 109559749 to 109559763 14 + TSS region transcription start site region 115089
Tssr115090 12 109559788 to 109559801 13 + TSS region transcription start site region 115090
Tssr115091 12 109559866 to 109559890 24 + TSS region transcription start site region 115091
Tssr115092 12 109559921 to 109559937 16 + TSS region transcription start site region 115092
Tssr115093 12 109559954 to 109559957 3 + TSS region transcription start site region 115093
Tssr117749 12 109560088 to 109560114 26 - TSS region transcription start site region 117749
Tssr115094 12 109560290 to 109560301 11 + TSS region transcription start site region 115094
Tssr115095 12 109560445 to 109560464 19 + TSS region transcription start site region 115095
Tssr117750 12 109560530 to 109560549 19 - TSS region transcription start site region 117750
Tssr117751 12 109560553 to 109560585 32 - TSS region transcription start site region 117751
Tssr115096 12 109560587 to 109560607 20 + TSS region transcription start site region 115096
Tssr115097 12 109560633 to 109560653 20 + TSS region transcription start site region 115097
Tssr115098 12 109560658 to 109560682 24 + TSS region transcription start site region 115098
Tssr115099 12 109560683 to 109560708 25 + TSS region transcription start site region 115099
Tssr115100 12 109560728 to 109560746 18 + TSS region transcription start site region 115100
Tssr115101 12 109560751 to 109560764 13 + TSS region transcription start site region 115101
Tssr115102 12 109560768 to 109560791 23 + TSS region transcription start site region 115102
Tssr115103 12 109560823 to 109560840 17 + TSS region transcription start site region 115103
Tssr115104 12 109560849 to 109560858 9 + TSS region transcription start site region 115104
Tssr117752 12 109560861 to 109560872 11 - TSS region transcription start site region 117752
Tssr115105 12 109560944 to 109560955 11 + TSS region transcription start site region 115105
Tssr115106 12 109560959 to 109560988 29 + TSS region transcription start site region 115106
Tssr115107 12 109560992 to 109561003 11 + TSS region transcription start site region 115107
Tssr115108 12 109561022 to 109561054 32 + TSS region transcription start site region 115108
Tssr115109 12 109561201 to 109561212 11 + TSS region transcription start site region 115109
Tssr115110 12 109561221 to 109561235 14 + TSS region transcription start site region 115110
Tssr115111 12 109561258 to 109561274 16 + TSS region transcription start site region 115111
Tssr115112 12 109561598 to 109561610 12 + TSS region transcription start site region 115112
Tssr115113 12 109561611 to 109561625 14 + TSS region transcription start site region 115113
Tssr115114 12 109561635 to 109561650 15 + TSS region transcription start site region 115114
Tssr117753 12 109561750 to 109561765 15 - TSS region transcription start site region 117753
Tssr115115 12 109561910 to 109561923 13 + TSS region transcription start site region 115115
Tssr115116 12 109561963 to 109561978 15 + TSS region transcription start site region 115116
Tssr115117 12 109561995 to 109562013 18 + TSS region transcription start site region 115117
Tssr115118 12 109562304 to 109562318 14 + TSS region transcription start site region 115118
Mir770 12 109563692 to 109563785 93 + miRNA gene microRNA 770
Tssr115119 12 109563764 to 109563768 4 + TSS region transcription start site region 115119
Tssr115120 12 109564664 to 109564676 12 + TSS region transcription start site region 115120
Tssr115121 12 109564699 to 109564715 16 + TSS region transcription start site region 115121
Tssr115122 12 109564894 to 109564911 17 + TSS region transcription start site region 115122
Tssr115123 12 109565927 to 109565939 12 + TSS region transcription start site region 115123
Tssr115124 12 109566318 to 109566332 14 + TSS region transcription start site region 115124
Tssr3950 12 109568181 to 109568196 15 + TSS region transcription start site region 3950
Gm26906 12 109568628 to 109571723 3095 - lincRNA gene predicted gene, 26906
Tssr115125 12 109571639 to 109571672 33 + TSS region transcription start site region 115125
Tssr115126 12 109571675 to 109571702 27 + TSS region transcription start site region 115126
Mir673 12 109571990 to 109572080 90 + miRNA gene microRNA 673
Mir493 12 109580233 to 109580315 82 + miRNA gene microRNA 493
Tssr115127 12 109581012 to 109581016 4 + TSS region transcription start site region 115127
Tssr115128 12 109581513 to 109581532 19 + TSS region transcription start site region 115128
Tssr115129 12 109581713 to 109581735 22 + TSS region transcription start site region 115129
Tssr115130 12 109581869 to 109581917 48 + TSS region transcription start site region 115130
Tssr115131 12 109583661 to 109583678 17 + TSS region transcription start site region 115131