Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:108703173-109433247

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40572 12 108703524 to 108711559 8035 - lncRNA gene predicted gene, 40572
Tssr117694 12 108710972 to 108710995 23 - TSS region transcription start site region 117694
Tssr115010 12 108713773 to 108713780 7 + TSS region transcription start site region 115010
Gm23872 12 108721848 to 108721924 76 - miRNA gene predicted gene, 23872
Gm48048 12 108737141 to 108737626 485 - pseudogene predicted gene, 48048
Gm33628 12 108756515 to 108758191 1676 - lncRNA gene predicted gene, 33628
Cpgi5089 12 108757649 to 108758278 629 CpG island CpG island 5089
Tssr3941 12 108760827 to 108760863 36 + TSS region transcription start site region 3941
Tssr117695 12 108761330 to 108761342 12 - TSS region transcription start site region 117695
Tssr117696 12 108761384 to 108761400 16 - TSS region transcription start site region 117696
Tssr115011 12 108761523 to 108761536 13 + TSS region transcription start site region 115011
Gm33682 12 108762032 to 108762970 938 - lincRNA gene predicted gene, 33682
Tssr117697 12 108765785 to 108765795 10 - TSS region transcription start site region 117697
Tssr117698 12 108765807 to 108765828 21 - TSS region transcription start site region 117698
Tssr117699 12 108765847 to 108765858 11 - TSS region transcription start site region 117699
Tssr117700 12 108765864 to 108765904 40 - TSS region transcription start site region 117700
Tssr115012 12 108765965 to 108765971 6 + TSS region transcription start site region 115012
Tssr117701 12 108765990 to 108765995 5 - TSS region transcription start site region 117701
Gm40573 12 108777988 to 108780655 2667 - lncRNA gene predicted gene, 40573
Gm34220 12 108790035 to 108792743 2708 - protein coding gene predicted gene, 34220
Cpgi5090 12 108792098 to 108794989 2891 CpG island CpG island 5090
Tssr115013 12 108792336 to 108792355 19 + TSS region transcription start site region 115013
Tssr117702 12 108792641 to 108792654 13 - TSS region transcription start site region 117702
Tssr117703 12 108792670 to 108792683 13 - TSS region transcription start site region 117703
Tssr117704 12 108792687 to 108792748 61 - TSS region transcription start site region 117704
Tssr115014 12 108792946 to 108792988 42 + TSS region transcription start site region 115014
Tssr115015 12 108792997 to 108793014 17 + TSS region transcription start site region 115015
Tssr115016 12 108793017 to 108793044 27 + TSS region transcription start site region 115016
Tssr115017 12 108793100 to 108793132 32 + TSS region transcription start site region 115017
Tssr115018 12 108793268 to 108793275 7 + TSS region transcription start site region 115018
Yy1 12 108793269 to 108816632 23363 + protein coding gene YY1 transcription factor
Tssr115019 12 108793285 to 108793375 90 + TSS region transcription start site region 115019
Tssr115020 12 108793418 to 108793431 13 + TSS region transcription start site region 115020
Tssr115021 12 108793931 to 108793945 14 + TSS region transcription start site region 115021
Tssr117705 12 108794174 to 108794218 44 - TSS region transcription start site region 117705
D12Mit181 12 108798859 to 108798968 109 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 181
D12Mit123.1 12 108812712 to 108812854 142 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 123.1
D12Mit123 12 108812799 to 108812936 137 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 123
D12Mit123.2 12 108812944 to 108813060 116 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 123.2
Slc25a29 12 108825878 to 108835876 9998 - protein coding gene solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29
Cpgi5091 12 108826755 to 108827232 477 CpG island CpG island 5091
Gm33813 12 108829533 to 108838664 9131 + lncRNA gene predicted gene, 33813
Tssr115022 12 108829706 to 108829713 7 + TSS region transcription start site region 115022
Cpgi5092 12 108835229 to 108836543 1314 CpG island CpG island 5092
Tssr117706 12 108835786 to 108835792 6 - TSS region transcription start site region 117706
Tssr117707 12 108835809 to 108835832 23 - TSS region transcription start site region 117707
Tssr117708 12 108835845 to 108835893 48 - TSS region transcription start site region 117708
Tssr115023 12 108836027 to 108836088 61 + TSS region transcription start site region 115023
Tssr115024 12 108836385 to 108836396 11 + TSS region transcription start site region 115024
Mir345 12 108836973 to 108837068 95 + miRNA gene microRNA 345
Tssr115025 12 108837045 to 108837049 4 + TSS region transcription start site region 115025
Tssr115026 12 108838545 to 108838605 60 + TSS region transcription start site region 115026
Slc25a47 12 108849813 to 108856815 7002 + protein coding gene solute carrier family 25, member 47
Tssr115027 12 108851122 to 108851129 7 + TSS region transcription start site region 115027
Tssr115028 12 108853477 to 108853508 31 + TSS region transcription start site region 115028
Tssr115029 12 108855332 to 108855362 30 + TSS region transcription start site region 115029
Wars 12 108860030 to 108894174 34144 - protein coding gene tryptophanyl-tRNA synthetase
Gm22079 12 108862564 to 108862669 105 - snRNA gene predicted gene, 22079
Tssr115030 12 108865449 to 108865460 11 + TSS region transcription start site region 115030
Tssr117709 12 108871610 to 108871617 7 - TSS region transcription start site region 117709
Tssr117710 12 108873273 to 108873284 11 - TSS region transcription start site region 117710
Tssr117711 12 108875520 to 108875529 9 - TSS region transcription start site region 117711
Tssr3942 12 108875534 to 108875539 5 - TSS region transcription start site region 3942
Tssr117712 12 108875541 to 108875550 9 - TSS region transcription start site region 117712
Tssr117713 12 108875570 to 108875580 10 - TSS region transcription start site region 117713
Tssr117714 12 108875587 to 108875616 29 - TSS region transcription start site region 117714
Tssr117715 12 108875625 to 108875630 5 - TSS region transcription start site region 117715
Tssr117716 12 108875643 to 108875654 11 - TSS region transcription start site region 117716
5033424D13Rik 12 108878769 to 108879416 647 + unclassified gene RIKEN cDNA 5033424D13 gene
Tssr117717 12 108882741 to 108882768 27 - TSS region transcription start site region 117717
Tssr117718 12 108882772 to 108882779 7 - TSS region transcription start site region 117718
Tssr117719 12 108882784 to 108882800 16 - TSS region transcription start site region 117719
Tssr117720 12 108884336 to 108884346 10 - TSS region transcription start site region 117720
Tssr117721 12 108884398 to 108884411 13 - TSS region transcription start site region 117721
Tssr117722 12 108885799 to 108885808 9 - TSS region transcription start site region 117722
Tssr117723 12 108885883 to 108885891 8 - TSS region transcription start site region 117723
Tssr117724 12 108888531 to 108888544 13 - TSS region transcription start site region 117724
Tssr117725 12 108888750 to 108888774 24 - TSS region transcription start site region 117725
Tssr117726 12 108888776 to 108888783 7 - TSS region transcription start site region 117726
Tssr117727 12 108889306 to 108889309 3 - TSS region transcription start site region 117727
Tssr117728 12 108893198 to 108893215 17 - TSS region transcription start site region 117728
1810056I18Rik 12 108893297 to 108893508 211 unclassified gene RIKEN cDNA 1810056I18 gene
Tssr117729 12 108893361 to 108893369 8 - TSS region transcription start site region 117729
Tssr117730 12 108893383 to 108893397 14 - TSS region transcription start site region 117730
Tssr117731 12 108893400 to 108893411 11 - TSS region transcription start site region 117731
Tssr117732 12 108893413 to 108893493 80 - TSS region transcription start site region 117732
Tssr117733 12 108893499 to 108893518 19 - TSS region transcription start site region 117733
Tssr117734 12 108893521 to 108893546 25 - TSS region transcription start site region 117734
Cpgi5093 12 108893576 to 108894539 963 CpG island CpG island 5093
Tssr115031 12 108893631 to 108893655 24 + TSS region transcription start site region 115031
Tssr115032 12 108893938 to 108893944 6 + TSS region transcription start site region 115032
Tssr117735 12 108894116 to 108894170 54 - TSS region transcription start site region 117735
Wdr25 12 108894228 to 109028452 134224 + protein coding gene WD repeat domain 25
Tssr115033 12 108894279 to 108894312 33 + TSS region transcription start site region 115033
Cpgi5094 12 108959398 to 108959809 411 CpG island CpG island 5094
Gm47980 12 108960912 to 108963832 2920 + unclassified gene predicted gene, 47980
Gm18405 12 108991141 to 108991651 510 - pseudogene predicted gene, 18405
Cpgi5095 12 108994628 to 108994945 317 CpG island CpG island 5095
Begain 12 109032187 to 109068217 36030 - protein coding gene brain-enriched guanylate kinase-associated
Cpgi5096 12 109032963 to 109034803 1840 CpG island CpG island 5096
Tssr117736 12 109033324 to 109033328 4 - TSS region transcription start site region 117736
Cpgi5097 12 109051858 to 109054413 2555 CpG island CpG island 5097
Tssr117737 12 109053087 to 109053104 17 - TSS region transcription start site region 117737
Tssr117738 12 109053310 to 109053321 11 - TSS region transcription start site region 117738
Tssr117739 12 109053723 to 109053761 38 - TSS region transcription start site region 117739
Cpgi5098 12 109067436 to 109068796 1360 CpG island CpG island 5098
Tssr117740 12 109068173 to 109068247 74 - TSS region transcription start site region 117740
Tssr117741 12 109068356 to 109068368 12 - TSS region transcription start site region 117741
Cpgi5099 12 109073361 to 109073523 162 CpG island CpG island 5099
Tssr117742 12 109073392 to 109073410 18 - TSS region transcription start site region 117742
Tssr117743 12 109073412 to 109073445 33 - TSS region transcription start site region 117743
Mif-ps7 12 109098227 to 109098553 326 + pseudogene macrophage migration inhibitory factor, pseudogene 7
D12Mit80 12 109217459 to 109217650 191 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 80
Plyid 12 109217459 to 115921502 6704043 QTL Polymeric IgA dominance
Gm22234 12 109319452 to 109319516 64 - miRNA gene predicted gene, 22234
Gm25297 12 109320970 to 109321036 66 - miRNA gene predicted gene, 25297
Tssr115034 12 109375395 to 109375396 1 + TSS region transcription start site region 115034
Cpgi5100 12 109393829 to 109394081 252 CpG island CpG island 5100
Cpgi5101 12 109399735 to 109399924 189 CpG island CpG island 5101