Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:108263779-108378030

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc85c 12 108203602 to 108275425 71823 - protein coding gene coiled-coil domain containing 85C
Cpgi5078 12 108265827 to 108266021 194 CpG island CpG island 5078
Tssr117680 12 108272576 to 108272578 2 - TSS region transcription start site region 117680
Cpgi5079 12 108273903 to 108276868 2965 CpG island CpG island 5079
Tssr117681 12 108274381 to 108274391 10 - TSS region transcription start site region 117681
Tssr117682 12 108275194 to 108275217 23 - TSS region transcription start site region 117682
Tssr117683 12 108275318 to 108275329 11 - TSS region transcription start site region 117683
Tssr117684 12 108275338 to 108275351 13 - TSS region transcription start site region 117684
Tssr117685 12 108275352 to 108275408 56 - TSS region transcription start site region 117685
Tssr117686 12 108275409 to 108275417 8 - TSS region transcription start site region 117686
Cpgi5080 12 108305834 to 108306924 1090 CpG island CpG island 5080
Hhipl1 12 108305918 to 108328300 22382 + protein coding gene hedgehog interacting protein-like 1
Tssr114959 12 108305991 to 108306003 12 + TSS region transcription start site region 114959
Tssr114960 12 108306184 to 108306203 19 + TSS region transcription start site region 114960
Tssr114961 12 108306380 to 108306402 22 + TSS region transcription start site region 114961
4930478K11Rik 12 108313779 to 108328030 14251 - antisense lncRNA gene RIKEN cDNA 4930478K11 gene
Cpgi5081 12 108318101 to 108318924 823 CpG island CpG island 5081
Cpgi5082 12 108327231 to 108328764 1533 CpG island CpG island 5082
Cpgi5083 12 108332972 to 108334967 1995 CpG island CpG island 5083
Tssr114962 12 108334239 to 108334260 21 + TSS region transcription start site region 114962
Tssr114963 12 108334341 to 108334406 65 + TSS region transcription start site region 114963
Cyp46a1 12 108334381 to 108362234 27853 + protein coding gene cytochrome P450, family 46, subfamily a, polypeptide 1
Cpgi5084 12 108352694 to 108353173 479 CpG island CpG island 5084
Tssr114964 12 108370985 to 108371025 40 + TSS region transcription start site region 114964
Eml1 12 108371002 to 108539576 168574 + protein coding gene echinoderm microtubule associated protein like 1
Tssr114965 12 108371180 to 108371196 16 + TSS region transcription start site region 114965
Tssr114966 12 108371198 to 108371210 12 + TSS region transcription start site region 114966
Tssr114967 12 108371221 to 108371244 23 + TSS region transcription start site region 114967
Cpgi5085 12 108372277 to 108372490 213 CpG island CpG island 5085