Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:108102231-108553764

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Setd3 12 108106431 to 108179314 72883 - protein coding gene SET domain containing 3
Tssr117675 12 108118712 to 108118729 17 - TSS region transcription start site region 117675
4932441P12Rik 12 108118846 to 108121283 2437 unclassified gene RIKEN cDNA 4932441P12 gene
Cpgi5076 12 108178236 to 108180389 2153 CpG island CpG island 5076
Tssr114948 12 108178483 to 108178497 14 + TSS region transcription start site region 114948
Tssr114949 12 108178851 to 108178860 9 + TSS region transcription start site region 114949
Tssr114950 12 108179133 to 108179134 1 + TSS region transcription start site region 114950
Tssr114951 12 108179136 to 108179169 33 + TSS region transcription start site region 114951
Tssr117676 12 108179210 to 108179225 15 - TSS region transcription start site region 117676
Tssr117677 12 108179237 to 108179339 102 - TSS region transcription start site region 117677
Tssr114952 12 108179543 to 108179582 39 + TSS region transcription start site region 114952
Ccnk 12 108179579 to 108203359 23780 + protein coding gene cyclin K
Tssr114953 12 108179793 to 108179831 38 + TSS region transcription start site region 114953
Tssr114954 12 108179908 to 108179923 15 + TSS region transcription start site region 114954
Tssr114955 12 108187171 to 108187185 14 + TSS region transcription start site region 114955
Tssr114956 12 108189141 to 108189147 6 + TSS region transcription start site region 114956
Tssr114957 12 108195694 to 108195713 19 + TSS region transcription start site region 114957
Tssr114958 12 108202243 to 108202259 16 + TSS region transcription start site region 114958
B930036G03Rik 12 108203599 to 108206076 2477 unclassified gene RIKEN cDNA B930036G03 gene
Ccdc85c 12 108203602 to 108275425 71823 - protein coding gene coiled-coil domain containing 85C
Tssr117678 12 108203958 to 108203963 5 - TSS region transcription start site region 117678
Tssr117679 12 108211576 to 108211590 14 - TSS region transcription start site region 117679
Cpgi5077 12 108240912 to 108241237 325 CpG island CpG island 5077
D12Mit233 12 108256256 to 108256405 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 233
Dipa4 12 108256256 to 108256405 149 QTL drug induced psychomotor activation 4
Cpgi5078 12 108265827 to 108266021 194 CpG island CpG island 5078
Tssr117680 12 108272576 to 108272578 2 - TSS region transcription start site region 117680
Cpgi5079 12 108273903 to 108276868 2965 CpG island CpG island 5079
Tssr117681 12 108274381 to 108274391 10 - TSS region transcription start site region 117681
Tssr117682 12 108275194 to 108275217 23 - TSS region transcription start site region 117682
Tssr117683 12 108275318 to 108275329 11 - TSS region transcription start site region 117683
Tssr117684 12 108275338 to 108275351 13 - TSS region transcription start site region 117684
Tssr117685 12 108275352 to 108275408 56 - TSS region transcription start site region 117685
Tssr117686 12 108275409 to 108275417 8 - TSS region transcription start site region 117686
Cpgi5080 12 108305834 to 108306924 1090 CpG island CpG island 5080
Hhipl1 12 108305918 to 108328300 22382 + protein coding gene hedgehog interacting protein-like 1
Tssr114959 12 108305991 to 108306003 12 + TSS region transcription start site region 114959
Tssr114960 12 108306184 to 108306203 19 + TSS region transcription start site region 114960
Tssr114961 12 108306380 to 108306402 22 + TSS region transcription start site region 114961
4930478K11Rik 12 108313779 to 108328030 14251 - antisense lncRNA gene RIKEN cDNA 4930478K11 gene
Cpgi5081 12 108318101 to 108318924 823 CpG island CpG island 5081
Cpgi5082 12 108327231 to 108328764 1533 CpG island CpG island 5082
Cpgi5083 12 108332972 to 108334967 1995 CpG island CpG island 5083
Tssr114962 12 108334239 to 108334260 21 + TSS region transcription start site region 114962
Tssr114963 12 108334341 to 108334406 65 + TSS region transcription start site region 114963
Cyp46a1 12 108334381 to 108362234 27853 + protein coding gene cytochrome P450, family 46, subfamily a, polypeptide 1
Cpgi5084 12 108352694 to 108353173 479 CpG island CpG island 5084
Tssr114964 12 108370985 to 108371025 40 + TSS region transcription start site region 114964
Eml1 12 108371002 to 108539576 168574 + protein coding gene echinoderm microtubule associated protein like 1
Tssr114965 12 108371180 to 108371196 16 + TSS region transcription start site region 114965
Tssr114966 12 108371198 to 108371210 12 + TSS region transcription start site region 114966
Tssr114967 12 108371221 to 108371244 23 + TSS region transcription start site region 114967
Cpgi5085 12 108372277 to 108372490 213 CpG island CpG island 5085
Tssr114968 12 108410573 to 108410585 12 + TSS region transcription start site region 114968
Tssr114969 12 108410625 to 108410662 37 + TSS region transcription start site region 114969
Tssr114970 12 108410880 to 108410899 19 + TSS region transcription start site region 114970
Cpgi5086 12 108422559 to 108423865 1306 CpG island CpG island 5086
Tssr114971 12 108422878 to 108422889 11 + TSS region transcription start site region 114971
Tssr114972 12 108423069 to 108423136 67 + TSS region transcription start site region 114972
Tssr114973 12 108423138 to 108423157 19 + TSS region transcription start site region 114973
Gm15636 12 108440530 to 108441270 740 - pseudogene predicted gene 15636
Tssr114974 12 108450299 to 108450325 26 + TSS region transcription start site region 114974
Tssr114975 12 108450412 to 108450415 3 + TSS region transcription start site region 114975
D12Mit279 12 108457397 to 108457521 124 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 279
Tssr114976 12 108472752 to 108472777 25 + TSS region transcription start site region 114976
Tssr114977 12 108472879 to 108472912 33 + TSS region transcription start site region 114977
Tssr114978 12 108477011 to 108477015 4 + TSS region transcription start site region 114978
Tssr114979 12 108485299 to 108485329 30 + TSS region transcription start site region 114979
Tssr114980 12 108488207 to 108488215 8 + TSS region transcription start site region 114980
Tssr114981 12 108488231 to 108488241 10 + TSS region transcription start site region 114981
Tssr117687 12 108489091 to 108489095 4 - TSS region transcription start site region 117687
Tssr114982 12 108495280 to 108495284 4 + TSS region transcription start site region 114982
Gm16596 12 108537243 to 108555618 18375 - antisense lncRNA gene predicted gene, 16596