Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:108054647-109314659

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230 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Setd3 12 108106431 to 108179314 72883 - protein coding gene SET domain containing 3
Tssr117675 12 108118712 to 108118729 17 - TSS region transcription start site region 117675
4932441P12Rik 12 108118846 to 108121283 2437 unclassified gene RIKEN cDNA 4932441P12 gene
Cpgi5076 12 108178236 to 108180389 2153 CpG island CpG island 5076
Tssr114948 12 108178483 to 108178497 14 + TSS region transcription start site region 114948
Tssr114949 12 108178851 to 108178860 9 + TSS region transcription start site region 114949
Tssr114950 12 108179133 to 108179134 1 + TSS region transcription start site region 114950
Tssr114951 12 108179136 to 108179169 33 + TSS region transcription start site region 114951
Tssr117676 12 108179210 to 108179225 15 - TSS region transcription start site region 117676
Tssr117677 12 108179237 to 108179339 102 - TSS region transcription start site region 117677
Tssr114952 12 108179543 to 108179582 39 + TSS region transcription start site region 114952
Ccnk 12 108179579 to 108203359 23780 + protein coding gene cyclin K
Tssr114953 12 108179793 to 108179831 38 + TSS region transcription start site region 114953
Tssr114954 12 108179908 to 108179923 15 + TSS region transcription start site region 114954
Tssr114955 12 108187171 to 108187185 14 + TSS region transcription start site region 114955
Tssr114956 12 108189141 to 108189147 6 + TSS region transcription start site region 114956
Tssr114957 12 108195694 to 108195713 19 + TSS region transcription start site region 114957
Tssr114958 12 108202243 to 108202259 16 + TSS region transcription start site region 114958
B930036G03Rik 12 108203599 to 108206076 2477 unclassified gene RIKEN cDNA B930036G03 gene
Ccdc85c 12 108203602 to 108275425 71823 - protein coding gene coiled-coil domain containing 85C
Tssr117678 12 108203958 to 108203963 5 - TSS region transcription start site region 117678
Tssr117679 12 108211576 to 108211590 14 - TSS region transcription start site region 117679
Cpgi5077 12 108240912 to 108241237 325 CpG island CpG island 5077
D12Mit233 12 108256256 to 108256405 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 233
Dipa4 12 108256256 to 108256405 149 QTL drug induced psychomotor activation 4
Cpgi5078 12 108265827 to 108266021 194 CpG island CpG island 5078
Tssr117680 12 108272576 to 108272578 2 - TSS region transcription start site region 117680
Cpgi5079 12 108273903 to 108276868 2965 CpG island CpG island 5079
Tssr117681 12 108274381 to 108274391 10 - TSS region transcription start site region 117681
Tssr117682 12 108275194 to 108275217 23 - TSS region transcription start site region 117682
Tssr117683 12 108275318 to 108275329 11 - TSS region transcription start site region 117683
Tssr117684 12 108275338 to 108275351 13 - TSS region transcription start site region 117684
Tssr117685 12 108275352 to 108275408 56 - TSS region transcription start site region 117685
Tssr117686 12 108275409 to 108275417 8 - TSS region transcription start site region 117686
Cpgi5080 12 108305834 to 108306924 1090 CpG island CpG island 5080
Hhipl1 12 108305918 to 108328300 22382 + protein coding gene hedgehog interacting protein-like 1
Tssr114959 12 108305991 to 108306003 12 + TSS region transcription start site region 114959
Tssr114960 12 108306184 to 108306203 19 + TSS region transcription start site region 114960
Tssr114961 12 108306380 to 108306402 22 + TSS region transcription start site region 114961
4930478K11Rik 12 108313779 to 108328030 14251 - antisense lncRNA gene RIKEN cDNA 4930478K11 gene
Cpgi5081 12 108318101 to 108318924 823 CpG island CpG island 5081
Cpgi5082 12 108327231 to 108328764 1533 CpG island CpG island 5082
Cpgi5083 12 108332972 to 108334967 1995 CpG island CpG island 5083
Tssr114962 12 108334239 to 108334260 21 + TSS region transcription start site region 114962
Tssr114963 12 108334341 to 108334406 65 + TSS region transcription start site region 114963
Cyp46a1 12 108334381 to 108362234 27853 + protein coding gene cytochrome P450, family 46, subfamily a, polypeptide 1
Cpgi5084 12 108352694 to 108353173 479 CpG island CpG island 5084
Tssr114964 12 108370985 to 108371025 40 + TSS region transcription start site region 114964
Eml1 12 108371002 to 108539576 168574 + protein coding gene echinoderm microtubule associated protein like 1
Tssr114965 12 108371180 to 108371196 16 + TSS region transcription start site region 114965
Tssr114966 12 108371198 to 108371210 12 + TSS region transcription start site region 114966
Tssr114967 12 108371221 to 108371244 23 + TSS region transcription start site region 114967
Cpgi5085 12 108372277 to 108372490 213 CpG island CpG island 5085
Tssr114968 12 108410573 to 108410585 12 + TSS region transcription start site region 114968
Tssr114969 12 108410625 to 108410662 37 + TSS region transcription start site region 114969
Tssr114970 12 108410880 to 108410899 19 + TSS region transcription start site region 114970
Cpgi5086 12 108422559 to 108423865 1306 CpG island CpG island 5086
Tssr114971 12 108422878 to 108422889 11 + TSS region transcription start site region 114971
Tssr114972 12 108423069 to 108423136 67 + TSS region transcription start site region 114972
Tssr114973 12 108423138 to 108423157 19 + TSS region transcription start site region 114973
Gm15636 12 108440530 to 108441270 740 - pseudogene predicted gene 15636
Tssr114974 12 108450299 to 108450325 26 + TSS region transcription start site region 114974
Tssr114975 12 108450412 to 108450415 3 + TSS region transcription start site region 114975
D12Mit279 12 108457397 to 108457521 124 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 279
Tssr114976 12 108472752 to 108472777 25 + TSS region transcription start site region 114976
Tssr114977 12 108472879 to 108472912 33 + TSS region transcription start site region 114977
Tssr114978 12 108477011 to 108477015 4 + TSS region transcription start site region 114978
Tssr114979 12 108485299 to 108485329 30 + TSS region transcription start site region 114979
Tssr114980 12 108488207 to 108488215 8 + TSS region transcription start site region 114980
Tssr114981 12 108488231 to 108488241 10 + TSS region transcription start site region 114981
Tssr117687 12 108489091 to 108489095 4 - TSS region transcription start site region 117687
Tssr114982 12 108495280 to 108495284 4 + TSS region transcription start site region 114982
Gm16596 12 108537243 to 108555618 18375 - antisense lncRNA gene predicted gene, 16596
Cpgi5087 12 108554199 to 108555674 1475 CpG island CpG island 5087
Tssr114983 12 108554670 to 108554689 19 + TSS region transcription start site region 114983
Tssr114984 12 108554701 to 108554723 22 + TSS region transcription start site region 114984
Evl 12 108554720 to 108688516 133796 + protein coding gene Ena-vasodilator stimulated phosphoprotein
Tssr114985 12 108554734 to 108554752 18 + TSS region transcription start site region 114985
Tssr114986 12 108554951 to 108554980 29 + TSS region transcription start site region 114986
D130067P18Rik 12 108579138 to 108584356 5218 unclassified gene RIKEN cDNA D130067P18 gene
Tssr114987 12 108605757 to 108605814 57 + TSS region transcription start site region 114987
Tssr114988 12 108606939 to 108606943 4 + TSS region transcription start site region 114988
Tssr114989 12 108635704 to 108635726 22 + TSS region transcription start site region 114989
Tssr114990 12 108635743 to 108635839 96 + TSS region transcription start site region 114990
Tssr114991 12 108635846 to 108635858 12 + TSS region transcription start site region 114991
Tssr114992 12 108636236 to 108636255 19 + TSS region transcription start site region 114992
Tssr117688 12 108636817 to 108636830 13 - TSS region transcription start site region 117688
Tssr117689 12 108639121 to 108639149 28 - TSS region transcription start site region 117689
Tssr114993 12 108648399 to 108648410 11 + TSS region transcription start site region 114993
Tssr114994 12 108652945 to 108652975 30 + TSS region transcription start site region 114994
Mir342 12 108658620 to 108658718 98 + miRNA gene microRNA 342
Tssr114995 12 108658679 to 108658708 29 + TSS region transcription start site region 114995
Tssr114996 12 108667189 to 108667206 17 + TSS region transcription start site region 114996
Tssr114997 12 108667258 to 108667264 6 + TSS region transcription start site region 114997
Tssr114998 12 108675453 to 108675492 39 + TSS region transcription start site region 114998
Tssr114999 12 108675499 to 108675524 25 + TSS region transcription start site region 114999
Tssr115000 12 108676218 to 108676231 13 + TSS region transcription start site region 115000
Tssr115001 12 108676293 to 108676296 3 + TSS region transcription start site region 115001
Gm40571 12 108676485 to 108681685 5200 - lncRNA gene predicted gene, 40571
Tssr115002 12 108677189 to 108677193 4 + TSS region transcription start site region 115002
Tssr115003 12 108677632 to 108677641 9 + TSS region transcription start site region 115003
Tssr115004 12 108677669 to 108677674 5 + TSS region transcription start site region 115004
Tssr115005 12 108677727 to 108677737 10 + TSS region transcription start site region 115005
Tssr115006 12 108677753 to 108677760 7 + TSS region transcription start site region 115006
Tssr115007 12 108677781 to 108677797 16 + TSS region transcription start site region 115007
Pwgrq7 12 108679049 to 90970593 -17708456 QTL pre-weaning growth rate QTL 7
Ebao2 12 108679049 to 82166529 -26512520 QTL epidermolysis bullosa acquisita onset 2
Tssr117690 12 108680450 to 108680454 4 - TSS region transcription start site region 117690
Tssr115008 12 108684647 to 108684659 12 + TSS region transcription start site region 115008
Degs2 12 108686792 to 108702306 15514 - protein coding gene delta(4)-desaturase, sphingolipid 2
Tssr115009 12 108688127 to 108688153 26 + TSS region transcription start site region 115009
Tssr117691 12 108688510 to 108688515 5 - TSS region transcription start site region 117691
Gm33467 12 108695486 to 108696446 960 + antisense lncRNA gene predicted gene, 33467
Cpgi5088 12 108701751 to 108702742 991 CpG island CpG island 5088
Tssr117692 12 108702265 to 108702320 55 - TSS region transcription start site region 117692
Tssr117693 12 108702322 to 108702331 9 - TSS region transcription start site region 117693
Gm40572 12 108703524 to 108711559 8035 - lncRNA gene predicted gene, 40572
Tssr117694 12 108710972 to 108710995 23 - TSS region transcription start site region 117694
Tssr115010 12 108713773 to 108713780 7 + TSS region transcription start site region 115010
Gm23872 12 108721848 to 108721924 76 - miRNA gene predicted gene, 23872
Gm48048 12 108737141 to 108737626 485 - pseudogene predicted gene, 48048
Gm33628 12 108756515 to 108758191 1676 - lncRNA gene predicted gene, 33628
Cpgi5089 12 108757649 to 108758278 629 CpG island CpG island 5089
Tssr3941 12 108760827 to 108760863 36 + TSS region transcription start site region 3941
Tssr117695 12 108761330 to 108761342 12 - TSS region transcription start site region 117695
Tssr117696 12 108761384 to 108761400 16 - TSS region transcription start site region 117696
Tssr115011 12 108761523 to 108761536 13 + TSS region transcription start site region 115011
Gm33682 12 108762032 to 108762970 938 - lincRNA gene predicted gene, 33682
Tssr117697 12 108765785 to 108765795 10 - TSS region transcription start site region 117697
Tssr117698 12 108765807 to 108765828 21 - TSS region transcription start site region 117698
Tssr117699 12 108765847 to 108765858 11 - TSS region transcription start site region 117699
Tssr117700 12 108765864 to 108765904 40 - TSS region transcription start site region 117700
Tssr115012 12 108765965 to 108765971 6 + TSS region transcription start site region 115012
Tssr117701 12 108765990 to 108765995 5 - TSS region transcription start site region 117701
Gm40573 12 108777988 to 108780655 2667 - lncRNA gene predicted gene, 40573
Gm34220 12 108790035 to 108792743 2708 - protein coding gene predicted gene, 34220
Cpgi5090 12 108792098 to 108794989 2891 CpG island CpG island 5090
Tssr115013 12 108792336 to 108792355 19 + TSS region transcription start site region 115013
Tssr117702 12 108792641 to 108792654 13 - TSS region transcription start site region 117702
Tssr117703 12 108792670 to 108792683 13 - TSS region transcription start site region 117703
Tssr117704 12 108792687 to 108792748 61 - TSS region transcription start site region 117704
Tssr115014 12 108792946 to 108792988 42 + TSS region transcription start site region 115014
Tssr115015 12 108792997 to 108793014 17 + TSS region transcription start site region 115015
Tssr115016 12 108793017 to 108793044 27 + TSS region transcription start site region 115016
Tssr115017 12 108793100 to 108793132 32 + TSS region transcription start site region 115017
Tssr115018 12 108793268 to 108793275 7 + TSS region transcription start site region 115018
Yy1 12 108793269 to 108816632 23363 + protein coding gene YY1 transcription factor
Tssr115019 12 108793285 to 108793375 90 + TSS region transcription start site region 115019
Tssr115020 12 108793418 to 108793431 13 + TSS region transcription start site region 115020
Tssr115021 12 108793931 to 108793945 14 + TSS region transcription start site region 115021
Tssr117705 12 108794174 to 108794218 44 - TSS region transcription start site region 117705
D12Mit181 12 108798859 to 108798968 109 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 181
D12Mit123.1 12 108812712 to 108812854 142 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 123.1
D12Mit123 12 108812799 to 108812936 137 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 123
D12Mit123.2 12 108812944 to 108813060 116 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 123.2
Slc25a29 12 108825878 to 108835876 9998 - protein coding gene solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29
Cpgi5091 12 108826755 to 108827232 477 CpG island CpG island 5091
Gm33813 12 108829533 to 108838664 9131 + lncRNA gene predicted gene, 33813
Tssr115022 12 108829706 to 108829713 7 + TSS region transcription start site region 115022
Cpgi5092 12 108835229 to 108836543 1314 CpG island CpG island 5092
Tssr117706 12 108835786 to 108835792 6 - TSS region transcription start site region 117706
Tssr117707 12 108835809 to 108835832 23 - TSS region transcription start site region 117707
Tssr117708 12 108835845 to 108835893 48 - TSS region transcription start site region 117708
Tssr115023 12 108836027 to 108836088 61 + TSS region transcription start site region 115023
Tssr115024 12 108836385 to 108836396 11 + TSS region transcription start site region 115024
Mir345 12 108836973 to 108837068 95 + miRNA gene microRNA 345
Tssr115025 12 108837045 to 108837049 4 + TSS region transcription start site region 115025
Tssr115026 12 108838545 to 108838605 60 + TSS region transcription start site region 115026
Slc25a47 12 108849813 to 108856815 7002 + protein coding gene solute carrier family 25, member 47
Tssr115027 12 108851122 to 108851129 7 + TSS region transcription start site region 115027
Tssr115028 12 108853477 to 108853508 31 + TSS region transcription start site region 115028
Tssr115029 12 108855332 to 108855362 30 + TSS region transcription start site region 115029
Wars 12 108860030 to 108894174 34144 - protein coding gene tryptophanyl-tRNA synthetase
Gm22079 12 108862564 to 108862669 105 - snRNA gene predicted gene, 22079
Tssr115030 12 108865449 to 108865460 11 + TSS region transcription start site region 115030
Tssr117709 12 108871610 to 108871617 7 - TSS region transcription start site region 117709
Tssr117710 12 108873273 to 108873284 11 - TSS region transcription start site region 117710
Tssr117711 12 108875520 to 108875529 9 - TSS region transcription start site region 117711
Tssr3942 12 108875534 to 108875539 5 - TSS region transcription start site region 3942
Tssr117712 12 108875541 to 108875550 9 - TSS region transcription start site region 117712
Tssr117713 12 108875570 to 108875580 10 - TSS region transcription start site region 117713
Tssr117714 12 108875587 to 108875616 29 - TSS region transcription start site region 117714
Tssr117715 12 108875625 to 108875630 5 - TSS region transcription start site region 117715
Tssr117716 12 108875643 to 108875654 11 - TSS region transcription start site region 117716
5033424D13Rik 12 108878769 to 108879416 647 + unclassified gene RIKEN cDNA 5033424D13 gene
Tssr117717 12 108882741 to 108882768 27 - TSS region transcription start site region 117717
Tssr117718 12 108882772 to 108882779 7 - TSS region transcription start site region 117718
Tssr117719 12 108882784 to 108882800 16 - TSS region transcription start site region 117719
Tssr117720 12 108884336 to 108884346 10 - TSS region transcription start site region 117720
Tssr117721 12 108884398 to 108884411 13 - TSS region transcription start site region 117721
Tssr117722 12 108885799 to 108885808 9 - TSS region transcription start site region 117722
Tssr117723 12 108885883 to 108885891 8 - TSS region transcription start site region 117723
Tssr117724 12 108888531 to 108888544 13 - TSS region transcription start site region 117724
Tssr117725 12 108888750 to 108888774 24 - TSS region transcription start site region 117725
Tssr117726 12 108888776 to 108888783 7 - TSS region transcription start site region 117726
Tssr117727 12 108889306 to 108889309 3 - TSS region transcription start site region 117727
Tssr117728 12 108893198 to 108893215 17 - TSS region transcription start site region 117728
1810056I18Rik 12 108893297 to 108893508 211 unclassified gene RIKEN cDNA 1810056I18 gene
Tssr117729 12 108893361 to 108893369 8 - TSS region transcription start site region 117729
Tssr117730 12 108893383 to 108893397 14 - TSS region transcription start site region 117730