Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:107999239-108669260

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111 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bcl11b 12 107910403 to 108003602 93199 - protein coding gene B cell leukemia/lymphoma 11B
Tssr117662 12 108001706 to 108001720 14 - TSS region transcription start site region 117662
Tssr117663 12 108001991 to 108001994 3 - TSS region transcription start site region 117663
Cpgi5074 12 108002034 to 108004515 2481 CpG island CpG island 5074
Tssr114947 12 108002051 to 108002055 4 + TSS region transcription start site region 114947
Tssr117664 12 108002114 to 108002123 9 - TSS region transcription start site region 117664
Tssr117665 12 108003201 to 108003212 11 - TSS region transcription start site region 117665
Tssr117666 12 108003518 to 108003571 53 - TSS region transcription start site region 117666
Tssr117667 12 108003581 to 108003592 11 - TSS region transcription start site region 117667
Tssr117668 12 108003594 to 108003613 19 - TSS region transcription start site region 117668
Tssr117669 12 108003622 to 108003633 11 - TSS region transcription start site region 117669
Tssr117670 12 108003642 to 108003663 21 - TSS region transcription start site region 117670
Tssr117671 12 108003687 to 108003705 18 - TSS region transcription start site region 117671
Tssr117672 12 108003761 to 108003772 11 - TSS region transcription start site region 117672
Tssr117673 12 108004056 to 108004085 29 - TSS region transcription start site region 117673
Tssr117674 12 108004086 to 108004097 11 - TSS region transcription start site region 117674
Cpgi5075 12 108004790 to 108006674 1884 CpG island CpG island 5075
Setd3 12 108106431 to 108179314 72883 - protein coding gene SET domain containing 3
Tssr117675 12 108118712 to 108118729 17 - TSS region transcription start site region 117675
4932441P12Rik 12 108118846 to 108121283 2437 unclassified gene RIKEN cDNA 4932441P12 gene
Cpgi5076 12 108178236 to 108180389 2153 CpG island CpG island 5076
Tssr114948 12 108178483 to 108178497 14 + TSS region transcription start site region 114948
Tssr114949 12 108178851 to 108178860 9 + TSS region transcription start site region 114949
Tssr114950 12 108179133 to 108179134 1 + TSS region transcription start site region 114950
Tssr114951 12 108179136 to 108179169 33 + TSS region transcription start site region 114951
Tssr117676 12 108179210 to 108179225 15 - TSS region transcription start site region 117676
Tssr117677 12 108179237 to 108179339 102 - TSS region transcription start site region 117677
Tssr114952 12 108179543 to 108179582 39 + TSS region transcription start site region 114952
Ccnk 12 108179579 to 108203359 23780 + protein coding gene cyclin K
Tssr114953 12 108179793 to 108179831 38 + TSS region transcription start site region 114953
Tssr114954 12 108179908 to 108179923 15 + TSS region transcription start site region 114954
Tssr114955 12 108187171 to 108187185 14 + TSS region transcription start site region 114955
Tssr114956 12 108189141 to 108189147 6 + TSS region transcription start site region 114956
Tssr114957 12 108195694 to 108195713 19 + TSS region transcription start site region 114957
Tssr114958 12 108202243 to 108202259 16 + TSS region transcription start site region 114958
B930036G03Rik 12 108203599 to 108206076 2477 unclassified gene RIKEN cDNA B930036G03 gene
Ccdc85c 12 108203602 to 108275425 71823 - protein coding gene coiled-coil domain containing 85C
Tssr117678 12 108203958 to 108203963 5 - TSS region transcription start site region 117678
Tssr117679 12 108211576 to 108211590 14 - TSS region transcription start site region 117679
Cpgi5077 12 108240912 to 108241237 325 CpG island CpG island 5077
Dipa4 12 108256256 to 108256405 149 QTL drug induced psychomotor activation 4
D12Mit233 12 108256256 to 108256405 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 233
Cpgi5078 12 108265827 to 108266021 194 CpG island CpG island 5078
Tssr117680 12 108272576 to 108272578 2 - TSS region transcription start site region 117680
Cpgi5079 12 108273903 to 108276868 2965 CpG island CpG island 5079
Tssr117681 12 108274381 to 108274391 10 - TSS region transcription start site region 117681
Tssr117682 12 108275194 to 108275217 23 - TSS region transcription start site region 117682
Tssr117683 12 108275318 to 108275329 11 - TSS region transcription start site region 117683
Tssr117684 12 108275338 to 108275351 13 - TSS region transcription start site region 117684
Tssr117685 12 108275352 to 108275408 56 - TSS region transcription start site region 117685
Tssr117686 12 108275409 to 108275417 8 - TSS region transcription start site region 117686
Cpgi5080 12 108305834 to 108306924 1090 CpG island CpG island 5080
Hhipl1 12 108305918 to 108328300 22382 + protein coding gene hedgehog interacting protein-like 1
Tssr114959 12 108305991 to 108306003 12 + TSS region transcription start site region 114959
Tssr114960 12 108306184 to 108306203 19 + TSS region transcription start site region 114960
Tssr114961 12 108306380 to 108306402 22 + TSS region transcription start site region 114961
4930478K11Rik 12 108313779 to 108328030 14251 - antisense lncRNA gene RIKEN cDNA 4930478K11 gene
Cpgi5081 12 108318101 to 108318924 823 CpG island CpG island 5081
Cpgi5082 12 108327231 to 108328764 1533 CpG island CpG island 5082
Cpgi5083 12 108332972 to 108334967 1995 CpG island CpG island 5083
Tssr114962 12 108334239 to 108334260 21 + TSS region transcription start site region 114962
Tssr114963 12 108334341 to 108334406 65 + TSS region transcription start site region 114963
Cyp46a1 12 108334381 to 108362234 27853 + protein coding gene cytochrome P450, family 46, subfamily a, polypeptide 1
Cpgi5084 12 108352694 to 108353173 479 CpG island CpG island 5084
Tssr114964 12 108370985 to 108371025 40 + TSS region transcription start site region 114964
Eml1 12 108371002 to 108539576 168574 + protein coding gene echinoderm microtubule associated protein like 1
Tssr114965 12 108371180 to 108371196 16 + TSS region transcription start site region 114965
Tssr114966 12 108371198 to 108371210 12 + TSS region transcription start site region 114966
Tssr114967 12 108371221 to 108371244 23 + TSS region transcription start site region 114967
Cpgi5085 12 108372277 to 108372490 213 CpG island CpG island 5085
Tssr114968 12 108410573 to 108410585 12 + TSS region transcription start site region 114968
Tssr114969 12 108410625 to 108410662 37 + TSS region transcription start site region 114969
Tssr114970 12 108410880 to 108410899 19 + TSS region transcription start site region 114970
Cpgi5086 12 108422559 to 108423865 1306 CpG island CpG island 5086
Tssr114971 12 108422878 to 108422889 11 + TSS region transcription start site region 114971
Tssr114972 12 108423069 to 108423136 67 + TSS region transcription start site region 114972
Tssr114973 12 108423138 to 108423157 19 + TSS region transcription start site region 114973
Gm15636 12 108440530 to 108441270 740 - pseudogene predicted gene 15636
Tssr114974 12 108450299 to 108450325 26 + TSS region transcription start site region 114974
Tssr114975 12 108450412 to 108450415 3 + TSS region transcription start site region 114975
D12Mit279 12 108457397 to 108457521 124 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 279
Tssr114976 12 108472752 to 108472777 25 + TSS region transcription start site region 114976
Tssr114977 12 108472879 to 108472912 33 + TSS region transcription start site region 114977
Tssr114978 12 108477011 to 108477015 4 + TSS region transcription start site region 114978
Tssr114979 12 108485299 to 108485329 30 + TSS region transcription start site region 114979
Tssr114980 12 108488207 to 108488215 8 + TSS region transcription start site region 114980
Tssr114981 12 108488231 to 108488241 10 + TSS region transcription start site region 114981
Tssr117687 12 108489091 to 108489095 4 - TSS region transcription start site region 117687
Tssr114982 12 108495280 to 108495284 4 + TSS region transcription start site region 114982
Gm16596 12 108537243 to 108555618 18375 - antisense lncRNA gene predicted gene, 16596
Cpgi5087 12 108554199 to 108555674 1475 CpG island CpG island 5087
Tssr114983 12 108554670 to 108554689 19 + TSS region transcription start site region 114983
Tssr114984 12 108554701 to 108554723 22 + TSS region transcription start site region 114984
Evl 12 108554720 to 108688516 133796 + protein coding gene Ena-vasodilator stimulated phosphoprotein
Tssr114985 12 108554734 to 108554752 18 + TSS region transcription start site region 114985
Tssr114986 12 108554951 to 108554980 29 + TSS region transcription start site region 114986
D130067P18Rik 12 108579138 to 108584356 5218 unclassified gene RIKEN cDNA D130067P18 gene
Tssr114987 12 108605757 to 108605814 57 + TSS region transcription start site region 114987
Tssr114988 12 108606939 to 108606943 4 + TSS region transcription start site region 114988
Tssr114989 12 108635704 to 108635726 22 + TSS region transcription start site region 114989
Tssr114990 12 108635743 to 108635839 96 + TSS region transcription start site region 114990
Tssr114991 12 108635846 to 108635858 12 + TSS region transcription start site region 114991
Tssr114992 12 108636236 to 108636255 19 + TSS region transcription start site region 114992
Tssr117688 12 108636817 to 108636830 13 - TSS region transcription start site region 117688
Tssr117689 12 108639121 to 108639149 28 - TSS region transcription start site region 117689
Tssr114993 12 108648399 to 108648410 11 + TSS region transcription start site region 114993
Tssr114994 12 108652945 to 108652975 30 + TSS region transcription start site region 114994
Mir342 12 108658620 to 108658718 98 + miRNA gene microRNA 342
Tssr114995 12 108658679 to 108658708 29 + TSS region transcription start site region 114995
Tssr114996 12 108667189 to 108667206 17 + TSS region transcription start site region 114996
Tssr114997 12 108667258 to 108667264 6 + TSS region transcription start site region 114997