Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:106598269-108353583

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166 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr117615 12 106634510 to 106634517 7 - TSS region transcription start site region 117615
Gm46320 12 106634705 to 106672087 37382 + protein coding gene predicted gene, 46320
Cpgi5068 12 106681929 to 106682135 206 CpG island CpG island 5068
4933406K04Rik 12 106685607 to 106716324 30717 - lincRNA gene RIKEN cDNA 4933406K04 gene
D12Mit27 12 106697812 to 106698092 280 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 27
Mobq3 12 106697812 to 106698092 280 QTL multigenic obesity QTL 3
Tssr117616 12 106716296 to 106716306 10 - TSS region transcription start site region 117616
Tssr117617 12 106716323 to 106716336 13 - TSS region transcription start site region 117617
Tssr117618 12 106716341 to 106716344 3 - TSS region transcription start site region 117618
Tssr117619 12 106716346 to 106716366 20 - TSS region transcription start site region 117619
Gm40569 12 106836879 to 106839888 3009 + lncRNA gene predicted gene, 40569
1700013N06Rik 12 106865355 to 106878883 13528 + lincRNA gene RIKEN cDNA 1700013N06 gene
Gm9599 12 106886446 to 106886926 480 - pseudogene predicted gene 9599
D12Mit207.1 12 106913409 to 106913544 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 207.1
D12Mit207 12 106913529 to 106913729 200 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 207
Gm16087 12 106953814 to 106955109 1295 - lincRNA gene predicted gene 16087
D12Mit132 12 106972772 to 106972901 129 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 132
Heal5 12 106972772 to 106972901 129 QTL wound healing/regeneration 5
5830406C21Rik 12 107070897 to 107073453 2556 unclassified gene RIKEN cDNA 5830406C21 gene
Gm16086 12 107079360 to 107099673 20313 - lincRNA gene predicted gene 16086
Gm46321 12 107111059 to 107112147 1088 - protein coding gene predicted gene, 46321
Tssr117620 12 107123708 to 107123720 12 - TSS region transcription start site region 117620
Tssr114936 12 107124441 to 107124456 15 + TSS region transcription start site region 114936
Tssr114937 12 107129658 to 107129669 11 + TSS region transcription start site region 114937
Gm16085 12 107129681 to 107132576 2895 + lincRNA gene predicted gene 16085
Tssr117621 12 107131475 to 107131487 12 - TSS region transcription start site region 117621
Tssr117622 12 107131514 to 107131523 9 - TSS region transcription start site region 117622
Tssr117623 12 107131918 to 107131926 8 - TSS region transcription start site region 117623
Tssr114938 12 107141504 to 107141517 13 + TSS region transcription start site region 114938
Tssr114939 12 107141558 to 107141568 10 + TSS region transcription start site region 114939
Tssr117624 12 107146786 to 107146792 6 - TSS region transcription start site region 117624
Gm16084 12 107147164 to 107160207 13043 - lincRNA gene predicted gene 16084
Tssr117625 12 107157156 to 107157171 15 - TSS region transcription start site region 117625
Tssr114940 12 107157336 to 107157372 36 + TSS region transcription start site region 114940
Tssr114941 12 107159728 to 107159732 4 + TSS region transcription start site region 114941
Tssr114942 12 107183548 to 107183566 18 + TSS region transcription start site region 114942
Gm2800 12 107183555 to 107186734 3179 + lincRNA gene predicted gene 2800
Cpgi5069 12 107183704 to 107183866 162 CpG island CpG island 5069
D12Mit122 12 107203137 to 107203286 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 122
Gm5187 12 107205076 to 107206066 990 - pseudogene predicted gene 5187
Tssr114943 12 107225535 to 107225538 3 + TSS region transcription start site region 114943
D12Mit139 12 107342009 to 107342134 125 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 139
Bbaa6 12 107342009 to 107342134 125 QTL B.burgdorferi-associated arthritis 6
Bbaa27 12 107342134 to 91287446 -16054688 QTL B.burgdorferi-associated arthritis 27
Tssr114944 12 107379056 to 107379057 1 + TSS region transcription start site region 114944
Gm17052 12 107419141 to 107419429 288 + pseudogene predicted gene 17052
D12Mit53 12 107459086 to 107459221 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 53
Gm3234 12 107463269 to 107488583 25314 - lincRNA gene predicted gene 3234
3110018I06Rik 12 107488632 to 107489636 1004 + unclassified gene RIKEN cDNA 3110018I06 gene
Gm9006 12 107613000 to 107613840 840 + pseudogene predicted gene 9006
Gm33236 12 107624195 to 107649915 25720 - lncRNA gene predicted gene, 33236
Tssr114945 12 107691066 to 107691077 11 + TSS region transcription start site region 114945
4930465M20Rik 12 107723743 to 107735488 11745 - lincRNA gene RIKEN cDNA 4930465M20 gene
D12Mit1010 12 107735177 to 107735394 217 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 1010
Tssr117626 12 107735490 to 107735501 11 - TSS region transcription start site region 117626
Gm15208 12 107744136 to 107784041 39905 - lincRNA gene predicted gene 15208
Gm33341 12 107824390 to 107825701 1311 + lncRNA gene predicted gene, 33341
4930440F04Rik 12 107899065 to 107899900 835 unclassified gene RIKEN cDNA 4930440F04 gene
Tssr3939 12 107903928 to 107903932 4 + TSS region transcription start site region 3939
Bcl11b 12 107910403 to 108003602 93199 - protein coding gene B cell leukemia/lymphoma 11B
Tssr117627 12 107911609 to 107911615 6 - TSS region transcription start site region 117627
Tssr117628 12 107912034 to 107912047 13 - TSS region transcription start site region 117628
Tssr117629 12 107912220 to 107912231 11 - TSS region transcription start site region 117629
Tssr117630 12 107912650 to 107912665 15 - TSS region transcription start site region 117630
Tssr117631 12 107913499 to 107913510 11 - TSS region transcription start site region 117631
Tssr117632 12 107913604 to 107913609 5 - TSS region transcription start site region 117632
Tssr117633 12 107915024 to 107915033 9 - TSS region transcription start site region 117633
Cpgi5070 12 107915227 to 107917585 2358 CpG island CpG island 5070
MCA1 12 107923581 to 107923795 214 DNA segment DNA segment, MCA1, multiple CA repeat 1
Tssr117634 12 107928873 to 107928879 6 - TSS region transcription start site region 117634
Tssr117635 12 107931308 to 107931310 2 - TSS region transcription start site region 117635
Tssr117636 12 107938646 to 107938662 16 - TSS region transcription start site region 117636
Tssr117637 12 107938672 to 107938691 19 - TSS region transcription start site region 117637
Tssr117638 12 107938737 to 107938749 12 - TSS region transcription start site region 117638
Tssr117639 12 107938752 to 107938768 16 - TSS region transcription start site region 117639
Tssr117640 12 107938773 to 107938784 11 - TSS region transcription start site region 117640
Tssr117641 12 107938793 to 107938801 8 - TSS region transcription start site region 117641
Tssr117642 12 107938830 to 107938839 9 - TSS region transcription start site region 117642
Tssr117643 12 107938948 to 107938958 10 - TSS region transcription start site region 117643
Tssr117644 12 107939059 to 107939074 15 - TSS region transcription start site region 117644
Tssr117645 12 107939090 to 107939123 33 - TSS region transcription start site region 117645
Tssr117646 12 107939130 to 107939141 11 - TSS region transcription start site region 117646
Tssr117647 12 107939146 to 107939153 7 - TSS region transcription start site region 117647
Tssr117648 12 107939206 to 107939223 17 - TSS region transcription start site region 117648
Tssr117649 12 107939232 to 107939249 17 - TSS region transcription start site region 117649
Tssr117650 12 107939270 to 107939311 41 - TSS region transcription start site region 117650
Tssr117651 12 107945572 to 107945576 4 - TSS region transcription start site region 117651
Tssr117652 12 107956651 to 107956654 3 - TSS region transcription start site region 117652
Tssr117653 12 107959038 to 107959046 8 - TSS region transcription start site region 117653
Tssr117654 12 107960214 to 107960219 5 - TSS region transcription start site region 117654
A130014H13Rik 12 107970456 to 107975278 4822 unclassified gene RIKEN cDNA A130014H13 gene
Tssr3940 12 107970567 to 107970585 18 - TSS region transcription start site region 3940
Tssr117655 12 107970712 to 107970716 4 - TSS region transcription start site region 117655
Tssr117656 12 107972036 to 107972038 2 - TSS region transcription start site region 117656
Tssr117657 12 107974946 to 107974950 4 - TSS region transcription start site region 117657
Cpgi5071 12 107976657 to 107976882 225 CpG island CpG island 5071
Cpgi5072 12 107979949 to 107980798 849 CpG island CpG island 5072
Tssr117658 12 107980786 to 107980804 18 - TSS region transcription start site region 117658
Tssr117659 12 107985290 to 107985296 6 - TSS region transcription start site region 117659
Tssr117660 12 107991539 to 107991554 15 - TSS region transcription start site region 117660
Tssr117661 12 107996216 to 107996218 2 - TSS region transcription start site region 117661
Tssr114946 12 107996454 to 107996460 6 + TSS region transcription start site region 114946
Cpgi5073 12 107998760 to 107999080 320 CpG island CpG island 5073
Tssr117662 12 108001706 to 108001720 14 - TSS region transcription start site region 117662
Tssr117663 12 108001991 to 108001994 3 - TSS region transcription start site region 117663
Cpgi5074 12 108002034 to 108004515 2481 CpG island CpG island 5074
Tssr114947 12 108002051 to 108002055 4 + TSS region transcription start site region 114947
Tssr117664 12 108002114 to 108002123 9 - TSS region transcription start site region 117664
Tssr117665 12 108003201 to 108003212 11 - TSS region transcription start site region 117665
Tssr117666 12 108003518 to 108003571 53 - TSS region transcription start site region 117666
Tssr117667 12 108003581 to 108003592 11 - TSS region transcription start site region 117667
Tssr117668 12 108003594 to 108003613 19 - TSS region transcription start site region 117668
Tssr117669 12 108003622 to 108003633 11 - TSS region transcription start site region 117669
Tssr117670 12 108003642 to 108003663 21 - TSS region transcription start site region 117670
Tssr117671 12 108003687 to 108003705 18 - TSS region transcription start site region 117671
Tssr117672 12 108003761 to 108003772 11 - TSS region transcription start site region 117672
Tssr117673 12 108004056 to 108004085 29 - TSS region transcription start site region 117673
Tssr117674 12 108004086 to 108004097 11 - TSS region transcription start site region 117674
Cpgi5075 12 108004790 to 108006674 1884 CpG island CpG island 5075
Setd3 12 108106431 to 108179314 72883 - protein coding gene SET domain containing 3
Tssr117675 12 108118712 to 108118729 17 - TSS region transcription start site region 117675
4932441P12Rik 12 108118846 to 108121283 2437 unclassified gene RIKEN cDNA 4932441P12 gene
Cpgi5076 12 108178236 to 108180389 2153 CpG island CpG island 5076
Tssr114948 12 108178483 to 108178497 14 + TSS region transcription start site region 114948
Tssr114949 12 108178851 to 108178860 9 + TSS region transcription start site region 114949
Tssr114950 12 108179133 to 108179134 1 + TSS region transcription start site region 114950
Tssr114951 12 108179136 to 108179169 33 + TSS region transcription start site region 114951
Tssr117676 12 108179210 to 108179225 15 - TSS region transcription start site region 117676
Tssr117677 12 108179237 to 108179339 102 - TSS region transcription start site region 117677
Tssr114952 12 108179543 to 108179582 39 + TSS region transcription start site region 114952
Ccnk 12 108179579 to 108203359 23780 + protein coding gene cyclin K
Tssr114953 12 108179793 to 108179831 38 + TSS region transcription start site region 114953
Tssr114954 12 108179908 to 108179923 15 + TSS region transcription start site region 114954
Tssr114955 12 108187171 to 108187185 14 + TSS region transcription start site region 114955
Tssr114956 12 108189141 to 108189147 6 + TSS region transcription start site region 114956
Tssr114957 12 108195694 to 108195713 19 + TSS region transcription start site region 114957
Tssr114958 12 108202243 to 108202259 16 + TSS region transcription start site region 114958
B930036G03Rik 12 108203599 to 108206076 2477 unclassified gene RIKEN cDNA B930036G03 gene
Ccdc85c 12 108203602 to 108275425 71823 - protein coding gene coiled-coil domain containing 85C
Tssr117678 12 108203958 to 108203963 5 - TSS region transcription start site region 117678
Tssr117679 12 108211576 to 108211590 14 - TSS region transcription start site region 117679
Cpgi5077 12 108240912 to 108241237 325 CpG island CpG island 5077
D12Mit233 12 108256256 to 108256405 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 233
Dipa4 12 108256256 to 108256405 149 QTL drug induced psychomotor activation 4
Cpgi5078 12 108265827 to 108266021 194 CpG island CpG island 5078
Tssr117680 12 108272576 to 108272578 2 - TSS region transcription start site region 117680
Cpgi5079 12 108273903 to 108276868 2965 CpG island CpG island 5079
Tssr117681 12 108274381 to 108274391 10 - TSS region transcription start site region 117681
Tssr117682 12 108275194 to 108275217 23 - TSS region transcription start site region 117682
Tssr117683 12 108275318 to 108275329 11 - TSS region transcription start site region 117683
Tssr117684 12 108275338 to 108275351 13 - TSS region transcription start site region 117684
Tssr117685 12 108275352 to 108275408 56 - TSS region transcription start site region 117685
Tssr117686 12 108275409 to 108275417 8 - TSS region transcription start site region 117686
Cpgi5080 12 108305834 to 108306924 1090 CpG island CpG island 5080
Hhipl1 12 108305918 to 108328300 22382 + protein coding gene hedgehog interacting protein-like 1
Tssr114959 12 108305991 to 108306003 12 + TSS region transcription start site region 114959
Tssr114960 12 108306184 to 108306203 19 + TSS region transcription start site region 114960
Tssr114961 12 108306380 to 108306402 22 + TSS region transcription start site region 114961
4930478K11Rik 12 108313779 to 108328030 14251 - antisense lncRNA gene RIKEN cDNA 4930478K11 gene
Cpgi5081 12 108318101 to 108318924 823 CpG island CpG island 5081
Cpgi5082 12 108327231 to 108328764 1533 CpG island CpG island 5082
Cpgi5083 12 108332972 to 108334967 1995 CpG island CpG island 5083
Tssr114962 12 108334239 to 108334260 21 + TSS region transcription start site region 114962
Tssr114963 12 108334341 to 108334406 65 + TSS region transcription start site region 114963
Cyp46a1 12 108334381 to 108362234 27853 + protein coding gene cytochrome P450, family 46, subfamily a, polypeptide 1
Cpgi5084 12 108352694 to 108353173 479 CpG island CpG island 5084