Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:105853912-106314101

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5049 12 105862740 to 105862924 184 CpG island CpG island 5049
Tssr114926 12 105862747 to 105862749 2 + TSS region transcription start site region 114926
Gm48807 12 105864262 to 105874745 10483 + lincRNA gene predicted gene, 48807
Gm22120 12 105865724 to 105865793 69 - miRNA gene predicted gene, 22120
Cpgi5050 12 105869857 to 105870056 199 CpG island CpG island 5050
Cpgi5051 12 105875294 to 105875482 188 CpG island CpG island 5051
Gm19554 12 105899841 to 105902150 2309 + lincRNA gene predicted gene, 19554
Tssr114927 12 105899856 to 105899866 10 + TSS region transcription start site region 114927
Gm32370 12 105902119 to 105906788 4669 - lncRNA gene predicted gene, 32370
Gm46377 12 105936786 to 105943590 6804 - lncRNA gene predicted gene, 46377
Cpgi5052 12 105962689 to 105963437 748 CpG island CpG island 5052
Cpgi5053 12 105967950 to 105968218 268 CpG island CpG island 5053
Cpgi5054 12 105989672 to 105989886 214 CpG island CpG island 5054
Cpgi5055 12 106008414 to 106008596 182 CpG island CpG island 5055
Cpgi5056 12 106010034 to 106010983 949 CpG island CpG island 5056
Tssr114928 12 106010204 to 106010225 21 + TSS region transcription start site region 114928
Vrk1 12 106010228 to 106077426 67198 + protein coding gene vaccinia related kinase 1
Tssr114929 12 106010275 to 106010339 64 + TSS region transcription start site region 114929
Tssr114930 12 106030703 to 106030725 22 + TSS region transcription start site region 114930
Tssr117613 12 106034384 to 106034423 39 - TSS region transcription start site region 117613
Cpgi5057 12 106083912 to 106084101 189 CpG island CpG island 5057
Gm46378 12 106085303 to 106088657 3354 + lincRNA gene predicted gene, 46378
Gm32723 12 106094506 to 106096641 2135 + lncRNA gene predicted gene, 32723
Gm32635 12 106094823 to 106098971 4148 - lincRNA gene predicted gene, 32635
Cpgi5058 12 106094881 to 106095085 204 CpG island CpG island 5058
Cpgi5059 12 106098725 to 106099098 373 CpG island CpG island 5059
Cpgi5060 12 106124066 to 106124562 496 CpG island CpG island 5060
Gm47646 12 106131978 to 106145400 13422 - lincRNA gene predicted gene, 47646
1700008O09Rik 12 106139778 to 106140107 329 unclassified gene RIKEN cDNA 1700008O09 gene
Gm32776 12 106146889 to 106151270 4381 + lncRNA gene predicted gene, 32776
Tssr114931 12 106147864 to 106147907 43 + TSS region transcription start site region 114931
4933424L07Rik 12 106158776 to 106160127 1351 unclassified gene RIKEN cDNA 4933424L07 gene
Cpgi5061 12 106174140 to 106174521 381 CpG island CpG island 5061
Gm24986 12 106221075 to 106221206 131 + snoRNA gene predicted gene, 24986
D12Mit115.1 12 106253360 to 106253525 165 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 115.1
D12Mit115 12 106253502 to 106253628 126 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 115
D12Mit50 12 106289933 to 106290064 131 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 50
Cpgi5062 12 106310857 to 106311277 420 CpG island CpG island 5062